Wall clock time and date at job start Wed Apr 1 2020 06:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.58889 * 2 1 4 4 C 1.53188 * 109.70472 * 239.64109 * 2 1 3 5 5 C 1.53043 * 109.31467 * 294.77984 * 4 2 1 6 6 H 1.08998 * 109.45899 * 58.64237 * 5 4 2 7 7 N 1.46504 * 109.45992 * 178.61356 * 5 4 2 8 8 C 1.34780 * 119.99658 * 205.00128 * 7 5 4 9 9 O 1.21280 * 120.00427 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99770 * 179.97438 * 8 7 5 11 11 C 1.50697 * 109.47087 * 179.97438 * 10 8 7 12 12 N 1.30834 * 125.96057 * 90.03033 * 11 10 8 13 13 C 1.33240 * 109.82857 * 179.97438 * 12 11 10 14 14 C 1.50702 * 125.52320 * 179.97438 * 13 12 11 15 15 C 1.52999 * 117.49725 * 188.74918 * 14 13 12 16 16 C 1.53000 * 117.49788 * 120.09082 * 14 13 12 17 17 N 1.30708 * 108.94958 * 359.97438 * 13 12 11 18 18 N 1.34424 * 125.96209 * 269.71861 * 11 10 8 19 19 C 1.46497 * 126.82657 * 359.97438 * 18 11 10 20 20 C 1.53033 * 109.53857 * 298.63644 * 5 4 2 21 21 C 1.52760 * 109.38562 * 61.23545 * 20 5 4 22 22 N 1.46915 * 109.00966 * 305.59342 * 21 20 5 23 23 C 1.36945 * 120.63065 * 233.58343 * 22 21 20 24 24 H 1.07996 * 120.00223 * 151.62647 * 23 22 21 25 25 C 1.38812 * 119.99791 * 331.62845 * 23 22 21 26 26 N 1.31621 * 119.99722 * 343.22075 * 25 23 22 27 27 Si 1.86797 * 120.00136 * 163.22109 * 25 23 22 28 28 H 1.48497 * 109.47343 * 89.99726 * 27 25 23 29 29 H 1.48499 * 109.47138 * 210.00291 * 27 25 23 30 30 H 1.48506 * 109.47011 * 329.99973 * 27 25 23 31 31 H 1.08991 * 109.47412 * 299.72237 * 1 2 3 32 32 H 1.09004 * 109.47115 * 59.72047 * 1 2 3 33 33 H 1.09001 * 109.47524 * 179.71216 * 1 2 3 34 34 H 1.09006 * 109.50014 * 54.73231 * 4 2 1 35 35 H 1.09001 * 109.50186 * 174.79676 * 4 2 1 36 36 H 0.96997 * 119.99883 * 24.99878 * 7 5 4 37 37 H 1.08999 * 109.47095 * 300.00141 * 10 8 7 38 38 H 1.09008 * 109.46947 * 60.00126 * 10 8 7 39 39 H 1.09006 * 115.55287 * 334.41344 * 14 13 12 40 40 H 1.09008 * 117.50016 * 359.97438 * 15 14 13 41 41 H 1.09003 * 117.50468 * 145.02101 * 15 14 13 42 42 H 1.09006 * 117.49727 * 214.97597 * 16 14 13 43 43 H 1.09000 * 117.49920 * 359.96868 * 16 14 13 44 44 H 1.09004 * 109.46592 * 89.99942 * 19 18 11 45 45 H 1.08995 * 109.47826 * 209.99760 * 19 18 11 46 46 H 1.08996 * 109.46877 * 330.00701 * 19 18 11 47 47 H 1.09002 * 109.50193 * 181.31451 * 20 5 4 48 48 H 1.09006 * 109.49898 * 301.41116 * 20 5 4 49 49 H 1.09001 * 109.50960 * 185.70236 * 21 20 5 50 50 H 1.09001 * 109.42767 * 65.42922 * 21 20 5 51 51 H 0.97006 * 119.99968 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 1.6473 -2.2044 -1.1690 6 1 0.5625 -2.2840 -1.0992 7 7 2.1111 -2.8977 -2.3734 8 6 1.4864 -4.0174 -2.7891 9 8 0.5402 -4.4507 -2.1663 10 6 1.9631 -4.7302 -4.0283 11 6 1.1027 -5.9430 -4.2724 12 7 0.0070 -5.9766 -4.9867 13 6 -0.4939 -7.2113 -4.9883 14 6 -1.7490 -7.6461 -5.7002 15 6 -2.2702 -9.0561 -5.4153 16 6 -1.6160 -8.7392 -6.7624 17 7 0.2799 -7.9841 -4.2725 18 7 1.3301 -7.1805 -3.7992 19 6 2.4502 -7.6062 -2.9564 20 6 2.2856 -2.8449 0.0656 21 6 1.7767 -2.1410 1.3223 22 7 2.0224 -0.6981 1.1954 23 6 2.7026 -0.0178 2.1700 24 1 3.2720 0.8640 1.9159 25 6 2.6603 -0.4616 3.4845 26 7 1.7299 -1.3126 3.8621 27 14 3.9237 0.1488 4.7176 28 1 3.4171 1.3786 5.3779 29 1 4.1632 -0.9000 5.7413 30 1 5.1955 0.4529 4.0138 31 1 -0.3634 0.5095 0.8924 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3634 -1.0276 -0.0052 34 1 1.6107 -0.2792 -2.1366 35 1 3.1325 -0.6473 -1.2894 36 1 2.8676 -2.5509 -2.8717 37 1 1.8947 -4.0576 -4.8833 38 1 2.9990 -5.0414 -3.8927 39 1 -2.4865 -6.8625 -5.8739 40 1 -1.7050 -9.6694 -4.7134 41 1 -3.3505 -9.2003 -5.4021 42 1 -2.2663 -8.6749 -7.6349 43 1 -0.6206 -9.1434 -6.9468 44 1 2.1792 -7.4912 -1.9068 45 1 2.6810 -8.6519 -3.1595 46 1 3.3236 -6.9921 -3.1754 47 1 2.0199 -3.9012 0.1060 48 1 3.3695 -2.7438 0.0087 49 1 2.3049 -2.5264 2.1945 50 1 0.7073 -2.3214 1.4310 51 1 1.7000 -1.6225 4.7809 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948061208.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:24 Heat of formation + Delta-G solvation = 73.506453 kcal Electronic energy + Delta-G solvation = -30837.985134 eV Core-core repulsion = 26774.618584 eV Total energy + Delta-G solvation = -4063.366550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.25423 -41.03044 -39.34165 -38.16903 -36.03228 -34.91413 -34.35601 -33.70879 -32.48402 -31.44142 -29.87673 -28.54346 -28.08279 -26.16517 -24.76346 -23.90534 -23.50318 -23.28841 -22.12975 -21.28233 -20.87435 -20.02192 -18.87469 -18.12057 -18.06491 -17.42601 -16.84336 -16.61322 -16.33628 -16.27373 -15.80944 -15.54872 -15.49564 -15.12979 -14.66560 -14.58330 -14.52529 -14.22316 -14.21153 -14.10027 -13.89155 -13.18002 -13.14943 -13.11122 -12.92833 -12.69758 -12.62038 -12.57174 -12.40963 -12.26462 -12.04691 -12.01182 -11.89140 -11.75691 -11.48513 -11.48007 -11.20921 -11.06688 -10.98125 -10.69990 -10.55161 -10.19316 -9.99741 -8.67130 -7.85150 -5.30444 0.45627 1.30843 1.47452 1.48955 1.58264 1.58995 1.62848 2.25164 2.52472 2.80604 2.97768 3.30896 3.35884 3.48268 3.62247 3.79315 3.87648 3.93366 4.00556 4.06034 4.11971 4.22391 4.26218 4.31539 4.42785 4.46547 4.52806 4.57265 4.61754 4.71457 4.73320 4.79561 4.85068 4.89036 4.91972 5.10433 5.11418 5.15603 5.17503 5.21873 5.27723 5.34466 5.36803 5.45282 5.51219 5.59036 5.69329 5.76566 5.78422 6.41748 6.59041 7.04264 7.16694 7.28522 7.88901 8.41037 9.21538 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.002122 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.999812 B =13191.670761 C =13504.870326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.159 3.841 3 H 0.071 0.929 4 C -0.117 4.117 5 C 0.162 3.838 6 H 0.056 0.944 7 N -0.702 5.702 8 C 0.516 3.484 9 O -0.585 6.585 10 C -0.056 4.056 11 C 0.293 3.707 12 N -0.561 5.561 13 C 0.239 3.761 14 C -0.097 4.097 15 C -0.156 4.156 16 C -0.138 4.138 17 N -0.343 5.343 18 N -0.376 5.376 19 C 0.084 3.916 20 C -0.129 4.129 21 C 0.184 3.816 22 N -0.598 5.598 23 C -0.254 4.254 24 H 0.073 0.927 25 C -0.055 4.055 26 N -0.938 5.938 27 Si 0.965 3.035 28 H -0.288 1.288 29 H -0.298 1.298 30 H -0.265 1.265 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.421 0.579 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.133 0.867 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.129 0.871 47 H 0.042 0.958 48 H 0.067 0.933 49 H 0.052 0.948 50 H -0.017 1.017 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 -10.503 -23.654 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.052 3.948 3 H 0.089 0.911 4 C -0.156 4.156 5 C 0.057 3.943 6 H 0.074 0.926 7 N -0.354 5.354 8 C 0.301 3.699 9 O -0.465 6.465 10 C -0.098 4.098 11 C 0.016 3.984 12 N -0.289 5.289 13 C -0.042 4.042 14 C -0.118 4.118 15 C -0.194 4.194 16 C -0.177 4.177 17 N -0.172 5.172 18 N -0.166 5.166 19 C -0.056 4.056 20 C -0.169 4.169 21 C 0.057 3.943 22 N -0.321 5.321 23 C -0.385 4.385 24 H 0.091 0.909 25 C -0.250 4.250 26 N -0.585 5.585 27 Si 0.794 3.206 28 H -0.215 1.215 29 H -0.225 1.225 30 H -0.190 1.190 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.259 0.741 37 H 0.178 0.822 38 H 0.181 0.819 39 H 0.151 0.849 40 H 0.106 0.894 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.124 0.876 46 H 0.147 0.853 47 H 0.061 0.939 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.001 0.999 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.754 -11.369 -23.030 25.831 hybrid contribution 0.522 0.351 1.687 1.801 sum 3.276 -11.018 -21.343 24.241 Atomic orbital electron populations 1.22199 0.98616 1.00060 1.00458 1.20733 0.91881 0.95705 0.86508 0.91059 1.22124 1.02221 0.92643 0.98642 1.20680 0.97977 0.92203 0.83398 0.92629 1.45886 1.35246 1.26191 1.28041 1.20679 0.82379 0.81053 0.85756 1.90790 1.30059 1.66843 1.58794 1.20389 0.99693 0.91237 0.98464 1.23910 0.93735 0.88473 0.92241 1.70185 1.10428 1.22539 1.25766 1.23618 0.97210 0.87329 0.96032 1.20254 0.92740 0.94513 1.04267 1.23092 1.02193 0.94595 0.99470 1.23098 1.02851 0.98402 0.93314 1.77822 1.00712 1.19214 1.19417 1.50331 1.20609 1.06729 1.38932 1.22339 0.85367 1.04567 0.93350 1.22219 1.00633 0.98055 0.96017 1.20314 0.95172 0.83830 0.94950 1.44357 1.64287 1.03411 1.20027 1.19533 1.21517 1.10200 0.87211 0.90889 1.25839 0.99555 1.00783 0.98825 1.70219 1.33961 1.37556 1.16717 0.85306 0.79733 0.76859 0.78718 1.21468 1.22483 1.18967 0.95479 0.90740 0.95040 0.88981 0.90140 0.74128 0.82176 0.81874 0.84876 0.89389 0.85732 0.85165 0.89344 0.90938 0.87603 0.85274 0.93940 0.91428 0.92977 0.99871 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.84 9.04 71.98 0.65 -5.19 16 2 C 0.16 6.00 3.28 44.97 0.15 6.15 16 3 H 0.07 2.62 7.93 -2.39 -0.02 2.61 16 4 C -0.12 -3.27 5.03 30.67 0.15 -3.12 16 5 C 0.16 5.03 2.21 45.02 0.10 5.12 16 6 H 0.06 2.12 5.94 -2.39 -0.01 2.11 16 7 N -0.70 -14.91 5.08 -442.40 -2.25 -17.16 16 8 C 0.52 12.73 7.79 87.66 0.68 13.41 16 9 O -0.59 -22.01 15.70 -3.03 -0.05 -22.06 16 10 C -0.06 -0.85 6.03 29.10 0.18 -0.67 16 11 C 0.29 7.30 6.48 138.23 0.90 8.20 16 12 N -0.56 -16.88 11.19 -179.73 -2.01 -18.89 16 13 C 0.24 6.95 7.68 138.63 1.07 8.02 16 14 C -0.10 -2.12 6.33 -11.54 -0.07 -2.19 16 15 C -0.16 -2.68 10.14 30.62 0.31 -2.37 16 16 C -0.14 -2.12 10.24 30.62 0.31 -1.81 16 17 N -0.34 -9.98 12.24 -51.34 -0.63 -10.61 16 18 N -0.38 -9.26 4.04 -359.89 -1.45 -10.71 16 19 C 0.08 1.26 11.33 127.77 1.45 2.70 16 20 C -0.13 -4.84 5.63 30.53 0.17 -4.67 16 21 C 0.18 9.00 4.86 86.22 0.42 9.42 16 22 N -0.60 -28.72 2.70 -676.08 -1.83 -30.54 16 23 C -0.25 -13.47 9.58 84.03 0.81 -12.66 16 24 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 25 C -0.06 -3.05 4.92 84.86 0.42 -2.63 16 26 N -0.94 -56.20 11.20 21.65 0.24 -55.95 16 27 Si 0.97 44.33 29.59 68.60 2.03 46.36 16 28 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 29 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 30 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.03 1.28 5.76 -2.39 -0.01 1.27 16 34 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.42 5.08 8.60 -92.71 -0.80 4.28 16 37 H 0.16 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.16 0.84 7.12 -2.38 -0.02 0.83 16 39 H 0.13 2.70 8.14 -2.38 -0.02 2.68 16 40 H 0.09 1.79 7.88 -2.38 -0.02 1.77 16 41 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.13 0.85 7.10 -2.39 -0.02 0.84 16 47 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 49 H 0.05 2.91 6.07 -2.39 -0.01 2.89 16 50 H -0.02 -0.93 7.52 -2.39 -0.02 -0.94 16 51 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -84.80 409.57 1.89 -82.91 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.15 Total: 18.95 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 7.68 Total: 17.72 kcal Atomic # 7 Polarization: -135.95 SS G_CDS: -7.92 Total: -143.87 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -84.80 1.89 -82.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948061208.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.418 kcal (2) G-P(sol) polarization free energy of solvation -84.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds