Wall clock time and date at job start Wed Apr 1 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46016 * 2 1 4 4 C 1.53040 * 109.45943 * 240.04012 * 2 1 3 5 5 C 1.53189 * 109.31097 * 178.61257 * 4 2 1 6 6 N 1.46924 * 108.77441 * 54.63947 * 5 4 2 7 7 C 1.36942 * 120.62944 * 126.40805 * 6 5 4 8 8 H 1.07997 * 120.00408 * 331.83758 * 7 6 5 9 9 C 1.38812 * 119.99544 * 151.83134 * 7 6 5 10 10 N 1.31621 * 120.00484 * 343.07046 * 9 7 6 11 11 Si 1.86803 * 119.99894 * 163.06931 * 9 7 6 12 12 H 1.48502 * 109.46857 * 90.00231 * 11 9 7 13 13 H 1.48496 * 109.47096 * 209.99929 * 11 9 7 14 14 H 1.48504 * 109.47186 * 330.00342 * 11 9 7 15 15 C 1.46989 * 118.75640 * 306.39005 * 6 5 4 16 16 C 1.53041 * 109.45899 * 119.97455 * 2 1 3 17 17 H 1.08999 * 109.49875 * 301.37044 * 16 2 1 18 18 N 1.46500 * 109.49686 * 61.43422 * 16 2 1 19 19 C 1.34777 * 119.99731 * 204.93558 * 18 16 2 20 20 O 1.21288 * 120.00208 * 359.97438 * 19 18 16 21 21 C 1.50704 * 120.00100 * 179.97438 * 19 18 16 22 22 N 1.46500 * 109.47256 * 179.97438 * 21 19 18 23 23 N 1.29104 * 126.01176 * 269.69626 * 22 21 19 24 24 N 1.29021 * 110.25627 * 179.77625 * 23 22 21 25 25 C 1.32906 * 108.63735 * 0.41131 * 24 23 22 26 26 C 1.34402 * 126.00026 * 90.00436 * 22 21 19 27 27 C 1.50528 * 129.25678 * 0.20560 * 26 22 21 28 28 C 1.53442 * 108.32259 * 163.46439 * 27 26 22 29 29 C 1.53105 * 109.55394 * 49.72188 * 28 27 26 30 30 C 1.50599 * 129.16070 * 179.86035 * 25 24 23 31 31 H 1.09005 * 109.47067 * 300.02313 * 1 2 3 32 32 H 1.08995 * 109.47139 * 60.02314 * 1 2 3 33 33 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.49622 * 298.57163 * 4 2 1 35 35 H 1.08998 * 109.49608 * 58.66284 * 4 2 1 36 36 H 1.09008 * 109.58226 * 174.41973 * 5 4 2 37 37 H 1.08996 * 109.58736 * 294.84986 * 5 4 2 38 38 H 0.96995 * 120.00318 * 179.97438 * 10 9 7 39 39 H 1.09008 * 109.58279 * 293.83063 * 15 6 5 40 40 H 1.08998 * 109.63239 * 173.38015 * 15 6 5 41 41 H 0.97001 * 120.00455 * 24.65893 * 18 16 2 42 42 H 1.09000 * 109.46925 * 300.00053 * 21 19 18 43 43 H 1.09006 * 109.47100 * 60.00197 * 21 19 18 44 44 H 1.09001 * 109.69608 * 283.16842 * 27 26 22 45 45 H 1.08999 * 109.69715 * 43.75407 * 27 26 22 46 46 H 1.09002 * 109.45475 * 169.74498 * 28 27 26 47 47 H 1.08996 * 109.45789 * 289.69196 * 28 27 26 48 48 H 1.08997 * 109.45254 * 49.96840 * 29 28 27 49 49 H 1.08999 * 109.45421 * 169.90402 * 29 28 27 50 50 H 1.08994 * 109.69078 * 43.76682 * 30 25 24 51 51 H 1.08999 * 109.72683 * 283.19749 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 -1.2502 5 6 3.5714 -0.6884 -1.2643 6 7 4.0679 -1.2488 -0.0002 7 6 4.9764 -2.2735 -0.0004 8 1 5.0045 -2.9702 -0.8251 9 6 5.8613 -2.4165 1.0595 10 7 6.0658 -1.4129 1.8862 11 14 6.7620 -4.0334 1.3125 12 1 8.0465 -4.0062 0.5679 13 1 7.0328 -4.2279 2.7596 14 1 5.9227 -5.1512 0.8112 15 6 3.5714 -0.6888 1.2649 16 6 2.0399 -0.7209 1.2500 17 1 1.6568 -0.2214 2.1398 18 7 1.5801 -2.1118 1.2339 19 6 1.4528 -2.7928 2.3900 20 8 1.7193 -2.2543 3.4436 21 6 0.9793 -4.2235 2.3736 22 7 0.9264 -4.7361 3.7450 23 7 1.8856 -5.3328 4.3699 24 7 1.5113 -5.6520 5.5626 25 6 0.2528 -5.2597 5.7321 26 6 -0.1315 -4.6729 4.5717 27 6 -1.4969 -4.0880 4.3284 28 6 -2.4507 -4.6261 5.4031 29 6 -1.8201 -4.4428 6.7862 30 6 -0.6333 -5.4026 6.9414 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5134 -0.8902 33 1 -0.3634 -1.0276 0.0005 34 1 1.6977 -1.7555 -1.2385 35 1 1.6572 -0.2205 -2.1398 36 1 3.9417 -1.2843 -2.0986 37 1 3.9142 0.3411 -1.3673 38 1 6.6839 -1.5130 2.6270 39 1 3.9142 0.3408 1.3682 40 1 3.9412 -1.2847 2.0993 41 1 1.3635 -2.5414 0.3916 42 1 -0.0144 -4.2722 1.9285 43 1 1.6705 -4.8283 1.7865 44 1 -1.4476 -3.0009 4.3921 45 1 -1.8523 -4.3828 3.3410 46 1 -3.3931 -4.0801 5.3585 47 1 -2.6365 -5.6855 5.2263 48 1 -1.4724 -3.4153 6.8933 49 1 -2.5627 -4.6564 7.5550 50 1 -0.0714 -5.1495 7.8404 51 1 -0.9969 -6.4278 7.0119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968331593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:31:24 Heat of formation + Delta-G solvation = 72.588745 kcal Electronic energy + Delta-G solvation = -32497.183132 eV Core-core repulsion = 28433.776787 eV Total energy + Delta-G solvation = -4063.406345 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.26643 -39.80184 -37.79105 -37.14858 -34.64091 -34.21824 -32.99612 -31.10405 -30.75348 -30.11022 -29.61440 -28.10028 -27.20936 -24.22343 -24.12640 -22.75469 -22.60337 -21.72041 -21.17413 -20.38366 -19.64687 -18.81526 -17.71347 -17.22899 -16.68568 -15.95265 -15.33559 -15.15081 -15.05047 -14.59921 -14.16157 -14.05195 -14.02687 -13.89995 -13.81225 -13.61640 -13.52935 -13.35430 -13.11851 -12.67838 -12.37883 -12.25754 -12.03465 -11.66413 -11.48955 -11.45327 -11.28161 -11.20418 -11.16624 -11.11266 -10.93884 -10.69962 -10.59447 -10.41074 -10.26712 -10.25084 -9.96645 -9.75541 -9.59601 -9.38943 -8.70584 -8.56478 -8.47122 -6.68316 -5.78722 -3.22823 1.66476 2.30470 2.72011 2.79894 3.40476 3.48467 3.49741 3.52745 4.13200 4.40685 4.50626 4.55708 4.61627 4.77223 4.79237 4.87088 4.91189 5.08995 5.13297 5.20855 5.25005 5.29655 5.33772 5.38909 5.44544 5.49775 5.60155 5.69822 5.75914 5.77796 5.82529 5.89140 5.96286 6.04658 6.06505 6.08966 6.17787 6.25504 6.34746 6.35197 6.42566 6.53601 6.64251 6.67566 6.77449 6.88860 7.26542 7.60069 7.77417 7.84092 8.43817 8.48471 8.71254 9.19198 9.83421 10.38469 11.29181 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010895 B = 0.003980 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.404427 B = 7032.773317 C = 8945.300183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.128 4.128 5 C 0.141 3.859 6 N -0.587 5.587 7 C -0.261 4.261 8 H 0.064 0.936 9 C 0.011 3.989 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.287 1.287 13 H -0.288 1.288 14 H -0.279 1.279 15 C 0.160 3.840 16 C 0.128 3.872 17 H 0.076 0.924 18 N -0.689 5.689 19 C 0.502 3.498 20 O -0.524 6.524 21 C 0.092 3.908 22 N -0.262 5.262 23 N -0.076 5.076 24 N -0.264 5.264 25 C -0.025 4.025 26 C -0.012 4.012 27 C -0.045 4.045 28 C -0.112 4.112 29 C -0.120 4.120 30 C -0.030 4.030 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.017 0.983 38 H 0.255 0.745 39 H 0.026 0.974 40 H 0.097 0.903 41 H 0.397 0.603 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.082 0.918 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.483 -2.974 0.221 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.390 4.390 8 H 0.082 0.918 9 C -0.189 4.189 10 N -0.539 5.539 11 Si 0.726 3.274 12 H -0.214 1.214 13 H -0.213 1.213 14 H -0.205 1.205 15 C 0.033 3.967 16 C 0.022 3.978 17 H 0.094 0.906 18 N -0.341 5.341 19 C 0.284 3.716 20 O -0.400 6.400 21 C -0.034 4.034 22 N -0.053 5.053 23 N -0.053 5.053 24 N -0.129 5.129 25 C -0.165 4.165 26 C -0.146 4.146 27 C -0.085 4.085 28 C -0.150 4.150 29 C -0.158 4.158 30 C -0.069 4.069 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.115 0.885 41 H 0.232 0.768 42 H 0.144 0.856 43 H 0.155 0.845 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.093 0.907 50 H 0.100 0.900 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.632 -3.070 1.006 19.896 hybrid contribution -0.314 -0.505 -0.487 0.768 sum -19.945 -3.575 0.519 20.270 Atomic orbital electron populations 1.21850 0.95968 1.01226 1.01071 1.21321 0.94574 1.00003 0.95401 0.90297 1.22082 0.99342 0.99297 0.96053 1.20938 0.90627 0.96579 0.90362 1.43988 1.48349 1.39612 0.99009 1.19040 1.10123 1.03142 1.06721 0.91848 1.25017 0.97013 0.97163 0.99691 1.69977 1.37041 1.29049 1.17843 0.86415 0.79676 0.83850 0.77499 1.21429 1.21336 1.20470 1.21202 0.86451 0.97896 0.91107 1.21849 0.99183 0.79703 0.97017 0.90610 1.45694 1.66434 1.14348 1.07591 1.20075 0.79320 0.87060 0.85179 1.90791 1.49525 1.69052 1.30655 1.21906 1.06178 0.95887 0.79394 1.46278 1.08951 1.37599 1.12425 1.78707 1.12498 1.12842 1.01281 1.74805 1.10851 1.19255 1.07962 1.21571 0.93464 1.04736 0.96742 1.21691 0.93321 1.07178 0.92396 1.20178 0.87615 1.00615 1.00045 1.21560 0.97684 1.01740 0.94039 1.21643 0.96992 1.00219 0.96995 1.19903 0.93494 1.00180 0.93318 0.93117 0.93032 0.93151 0.92759 0.92706 0.92759 0.96465 0.93486 0.95624 0.88515 0.76815 0.85644 0.84528 0.89596 0.90457 0.90659 0.91280 0.91260 0.90749 0.89953 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.05 37.16 0.34 -1.25 16 2 C -0.09 -1.33 2.48 -90.58 -0.22 -1.55 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.13 -1.84 5.20 -26.61 -0.14 -1.97 16 5 C 0.14 2.68 6.52 -3.71 -0.02 2.65 16 6 N -0.59 -13.71 2.91 -172.27 -0.50 -14.21 16 7 C -0.26 -6.92 9.58 -15.06 -0.14 -7.06 16 8 H 0.06 1.65 7.88 -52.49 -0.41 1.23 16 9 C 0.01 0.31 4.92 -17.43 -0.09 0.22 16 10 N -0.90 -26.70 11.19 55.49 0.62 -26.08 16 11 Si 0.90 22.57 29.59 -169.99 -5.03 17.54 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.16 3.72 4.91 -3.68 -0.02 3.71 16 16 C 0.13 2.25 2.24 -67.81 -0.15 2.10 16 17 H 0.08 1.41 7.58 -51.93 -0.39 1.01 16 18 N -0.69 -10.79 4.26 -53.69 -0.23 -11.01 16 19 C 0.50 8.57 7.87 -10.98 -0.09 8.49 16 20 O -0.52 -11.54 16.09 5.55 0.09 -11.45 16 21 C 0.09 1.22 6.72 -5.19 -0.03 1.19 16 22 N -0.26 -4.28 2.82 -58.43 -0.16 -4.44 16 23 N -0.08 -1.52 13.19 60.35 0.80 -0.72 16 24 N -0.26 -5.09 12.40 33.16 0.41 -4.68 16 25 C -0.03 -0.39 7.11 -83.12 -0.59 -0.98 16 26 C -0.01 -0.17 6.76 -82.50 -0.56 -0.73 16 27 C -0.05 -0.43 5.97 -27.74 -0.17 -0.60 16 28 C -0.11 -0.82 5.90 -26.45 -0.16 -0.98 16 29 C -0.12 -0.99 5.90 -26.46 -0.16 -1.14 16 30 C -0.03 -0.32 6.30 -27.71 -0.17 -0.49 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.51 7.54 -51.93 -0.39 0.12 16 34 H 0.05 0.74 6.40 -51.93 -0.33 0.41 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 1.02 7.93 -51.92 -0.41 0.60 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.10 2.72 6.06 -51.93 -0.31 2.40 16 41 H 0.40 5.22 6.63 -40.82 -0.27 4.95 16 42 H 0.13 1.02 7.71 -51.93 -0.40 0.62 16 43 H 0.14 1.72 8.14 -51.93 -0.42 1.30 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 48 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -36.24 399.05 -8.75 -45.00 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -8.39 Total: 2.45 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.37 Total: 1.59 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.93 Total: -61.14 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.24 -8.75 -45.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968331593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.585 kcal (2) G-P(sol) polarization free energy of solvation -36.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds