Wall clock time and date at job start Wed Apr 1 2020 06:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46016 * 2 1 4 4 C 1.53040 * 109.45943 * 240.04012 * 2 1 3 5 5 C 1.53189 * 109.31097 * 178.61257 * 4 2 1 6 6 N 1.46924 * 108.77441 * 54.63947 * 5 4 2 7 7 C 1.36942 * 120.62944 * 126.40805 * 6 5 4 8 8 H 1.07997 * 120.00408 * 331.83758 * 7 6 5 9 9 C 1.38812 * 119.99544 * 151.83134 * 7 6 5 10 10 N 1.31621 * 120.00484 * 343.07046 * 9 7 6 11 11 Si 1.86803 * 119.99894 * 163.06931 * 9 7 6 12 12 H 1.48502 * 109.46857 * 90.00231 * 11 9 7 13 13 H 1.48496 * 109.47096 * 209.99929 * 11 9 7 14 14 H 1.48504 * 109.47186 * 330.00342 * 11 9 7 15 15 C 1.46989 * 118.75640 * 306.39005 * 6 5 4 16 16 C 1.53041 * 109.45899 * 119.97455 * 2 1 3 17 17 H 1.08999 * 109.49875 * 301.37044 * 16 2 1 18 18 N 1.46500 * 109.49686 * 61.43422 * 16 2 1 19 19 C 1.34777 * 119.99731 * 204.93558 * 18 16 2 20 20 O 1.21288 * 120.00208 * 359.97438 * 19 18 16 21 21 C 1.50704 * 120.00100 * 179.97438 * 19 18 16 22 22 N 1.46500 * 109.47256 * 179.97438 * 21 19 18 23 23 N 1.29104 * 126.01176 * 269.69626 * 22 21 19 24 24 N 1.29021 * 110.25627 * 179.77625 * 23 22 21 25 25 C 1.32906 * 108.63735 * 0.41131 * 24 23 22 26 26 C 1.34402 * 126.00026 * 90.00436 * 22 21 19 27 27 C 1.50528 * 129.25678 * 0.20560 * 26 22 21 28 28 C 1.53442 * 108.32259 * 163.46439 * 27 26 22 29 29 C 1.53105 * 109.55394 * 49.72188 * 28 27 26 30 30 C 1.50599 * 129.16070 * 179.86035 * 25 24 23 31 31 H 1.09005 * 109.47067 * 300.02313 * 1 2 3 32 32 H 1.08995 * 109.47139 * 60.02314 * 1 2 3 33 33 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.49622 * 298.57163 * 4 2 1 35 35 H 1.08998 * 109.49608 * 58.66284 * 4 2 1 36 36 H 1.09008 * 109.58226 * 174.41973 * 5 4 2 37 37 H 1.08996 * 109.58736 * 294.84986 * 5 4 2 38 38 H 0.96995 * 120.00318 * 179.97438 * 10 9 7 39 39 H 1.09008 * 109.58279 * 293.83063 * 15 6 5 40 40 H 1.08998 * 109.63239 * 173.38015 * 15 6 5 41 41 H 0.97001 * 120.00455 * 24.65893 * 18 16 2 42 42 H 1.09000 * 109.46925 * 300.00053 * 21 19 18 43 43 H 1.09006 * 109.47100 * 60.00197 * 21 19 18 44 44 H 1.09001 * 109.69608 * 283.16842 * 27 26 22 45 45 H 1.08999 * 109.69715 * 43.75407 * 27 26 22 46 46 H 1.09002 * 109.45475 * 169.74498 * 28 27 26 47 47 H 1.08996 * 109.45789 * 289.69196 * 28 27 26 48 48 H 1.08997 * 109.45254 * 49.96840 * 29 28 27 49 49 H 1.08999 * 109.45421 * 169.90402 * 29 28 27 50 50 H 1.08994 * 109.69078 * 43.76682 * 30 25 24 51 51 H 1.08999 * 109.72683 * 283.19749 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 -1.2502 5 6 3.5714 -0.6884 -1.2643 6 7 4.0679 -1.2488 -0.0002 7 6 4.9764 -2.2735 -0.0004 8 1 5.0045 -2.9702 -0.8251 9 6 5.8613 -2.4165 1.0595 10 7 6.0658 -1.4129 1.8862 11 14 6.7620 -4.0334 1.3125 12 1 8.0465 -4.0062 0.5679 13 1 7.0328 -4.2279 2.7596 14 1 5.9227 -5.1512 0.8112 15 6 3.5714 -0.6888 1.2649 16 6 2.0399 -0.7209 1.2500 17 1 1.6568 -0.2214 2.1398 18 7 1.5801 -2.1118 1.2339 19 6 1.4528 -2.7928 2.3900 20 8 1.7193 -2.2543 3.4436 21 6 0.9793 -4.2235 2.3736 22 7 0.9264 -4.7361 3.7450 23 7 1.8856 -5.3328 4.3699 24 7 1.5113 -5.6520 5.5626 25 6 0.2528 -5.2597 5.7321 26 6 -0.1315 -4.6729 4.5717 27 6 -1.4969 -4.0880 4.3284 28 6 -2.4507 -4.6261 5.4031 29 6 -1.8201 -4.4428 6.7862 30 6 -0.6333 -5.4026 6.9414 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5134 -0.8902 33 1 -0.3634 -1.0276 0.0005 34 1 1.6977 -1.7555 -1.2385 35 1 1.6572 -0.2205 -2.1398 36 1 3.9417 -1.2843 -2.0986 37 1 3.9142 0.3411 -1.3673 38 1 6.6839 -1.5130 2.6270 39 1 3.9142 0.3408 1.3682 40 1 3.9412 -1.2847 2.0993 41 1 1.3635 -2.5414 0.3916 42 1 -0.0144 -4.2722 1.9285 43 1 1.6705 -4.8283 1.7865 44 1 -1.4476 -3.0009 4.3921 45 1 -1.8523 -4.3828 3.3410 46 1 -3.3931 -4.0801 5.3585 47 1 -2.6365 -5.6855 5.2263 48 1 -1.4724 -3.4153 6.8933 49 1 -2.5627 -4.6564 7.5550 50 1 -0.0714 -5.1495 7.8404 51 1 -0.9969 -6.4278 7.0119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968331593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:31:23 Heat of formation + Delta-G solvation = 47.051455 kcal Electronic energy + Delta-G solvation = -32498.290512 eV Core-core repulsion = 28433.776787 eV Total energy + Delta-G solvation = -4064.513725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.44500 -41.21926 -39.25079 -37.94142 -36.01151 -35.81124 -34.44210 -32.87130 -31.72510 -31.14761 -30.93777 -29.35310 -28.73380 -25.85584 -25.10017 -24.12792 -23.60143 -23.03042 -22.72604 -21.58240 -20.52610 -20.33849 -18.98548 -18.69560 -18.20932 -17.14606 -16.90404 -16.63193 -16.27419 -15.88804 -15.69440 -15.31100 -14.97877 -14.94969 -14.90302 -14.76349 -14.71573 -14.65344 -14.38036 -14.10955 -13.61098 -13.49039 -13.16700 -13.04267 -13.01867 -12.76417 -12.62064 -12.53851 -12.49148 -12.29180 -12.21962 -11.98600 -11.94809 -11.80828 -11.56080 -11.47452 -11.32822 -11.29715 -11.07926 -10.76234 -10.56876 -10.06136 -9.82945 -8.68211 -7.91488 -5.35598 0.48315 1.23608 1.34501 1.41313 1.46420 1.47099 1.51458 2.23908 2.44157 3.19486 3.26440 3.49839 3.59674 3.66013 3.72172 3.87865 3.88610 3.91614 3.99687 4.03495 4.11846 4.13438 4.44424 4.51007 4.57422 4.59638 4.62725 4.67953 4.71031 4.80979 4.87762 4.93295 4.98350 5.02798 5.09659 5.09861 5.19172 5.21204 5.23352 5.25962 5.26939 5.34731 5.46957 5.48606 5.51785 5.56568 5.58216 5.65871 5.68724 6.34487 6.51459 7.10723 7.19881 7.46781 7.85027 8.34678 9.13052 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010895 B = 0.003980 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.404427 B = 7032.773317 C = 8945.300183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.115 4.115 5 C 0.133 3.867 6 N -0.599 5.599 7 C -0.245 4.245 8 H 0.076 0.924 9 C -0.048 4.048 10 N -0.934 5.934 11 Si 0.945 3.055 12 H -0.279 1.279 13 H -0.314 1.314 14 H -0.263 1.263 15 C 0.170 3.830 16 C 0.142 3.858 17 H 0.062 0.938 18 N -0.675 5.675 19 C 0.498 3.502 20 O -0.582 6.582 21 C 0.092 3.908 22 N -0.265 5.265 23 N -0.140 5.140 24 N -0.305 5.305 25 C -0.045 4.045 26 C -0.002 4.002 27 C -0.047 4.047 28 C -0.108 4.108 29 C -0.117 4.117 30 C -0.032 4.032 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.009 0.991 38 H 0.242 0.758 39 H -0.008 1.008 40 H 0.042 0.958 41 H 0.413 0.587 42 H 0.189 0.811 43 H 0.143 0.857 44 H 0.083 0.917 45 H 0.111 0.889 46 H 0.105 0.895 47 H 0.078 0.922 48 H 0.054 0.946 49 H 0.103 0.897 50 H 0.073 0.927 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.431 -3.695 -2.545 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.090 0.910 4 C -0.153 4.153 5 C 0.009 3.991 6 N -0.323 5.323 7 C -0.376 4.376 8 H 0.093 0.907 9 C -0.243 4.243 10 N -0.581 5.581 11 Si 0.775 3.225 12 H -0.206 1.206 13 H -0.241 1.241 14 H -0.188 1.188 15 C 0.043 3.957 16 C 0.036 3.964 17 H 0.080 0.920 18 N -0.327 5.327 19 C 0.282 3.718 20 O -0.462 6.462 21 C -0.032 4.032 22 N -0.056 5.056 23 N -0.117 5.117 24 N -0.168 5.168 25 C -0.186 4.186 26 C -0.136 4.136 27 C -0.086 4.086 28 C -0.145 4.145 29 C -0.155 4.155 30 C -0.071 4.071 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.051 0.949 39 H 0.010 0.990 40 H 0.061 0.939 41 H 0.252 0.748 42 H 0.206 0.794 43 H 0.161 0.839 44 H 0.101 0.899 45 H 0.130 0.870 46 H 0.123 0.877 47 H 0.097 0.903 48 H 0.072 0.928 49 H 0.121 0.879 50 H 0.092 0.908 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -24.597 -3.817 -1.857 24.961 hybrid contribution 1.222 -0.192 0.349 1.286 sum -23.375 -4.009 -1.509 23.764 Atomic orbital electron populations 1.21763 0.92424 1.02703 1.02240 1.21273 0.97322 0.98885 0.93089 0.91043 1.21960 0.95081 1.00860 0.97437 1.21192 0.94174 0.95734 0.88042 1.44198 1.48060 1.39390 1.00612 1.19438 1.08882 1.03429 1.05826 0.90684 1.25649 0.98833 0.99325 1.00513 1.70154 1.38510 1.30849 1.18597 0.85599 0.79399 0.81753 0.75750 1.20583 1.24136 1.18751 1.20866 0.90528 0.94728 0.89601 1.21439 0.94730 0.81418 0.98837 0.91997 1.45518 1.65432 1.13569 1.08172 1.20774 0.78124 0.88412 0.84453 1.90776 1.51919 1.70694 1.32784 1.22225 1.09747 0.92557 0.78642 1.46528 1.08833 1.36909 1.13333 1.78604 1.14645 1.16073 1.02339 1.74705 1.13166 1.20636 1.08296 1.22441 0.92729 1.04492 0.98900 1.22578 0.94480 1.05193 0.91397 1.20500 0.85081 1.00168 1.02831 1.21610 0.97995 1.02725 0.92197 1.21671 0.96413 0.98448 0.98995 1.20130 0.93749 1.02083 0.91131 0.93278 0.90629 0.91509 0.91129 0.88968 0.92271 0.97318 0.94930 0.98998 0.93931 0.74819 0.79382 0.83879 0.89864 0.87050 0.87652 0.90323 0.92764 0.87857 0.90812 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.05 71.98 0.65 -1.66 16 2 C -0.09 -2.21 2.48 -10.76 -0.03 -2.23 16 3 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.11 -2.80 5.20 30.67 0.16 -2.64 16 5 C 0.13 4.81 6.52 86.36 0.56 5.37 16 6 N -0.60 -28.17 2.91 -698.93 -2.04 -30.20 16 7 C -0.25 -13.09 9.58 84.03 0.81 -12.29 16 8 H 0.08 3.80 7.88 -2.91 -0.02 3.77 16 9 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 10 N -0.93 -59.27 11.19 21.65 0.24 -59.03 16 11 Si 0.95 48.09 29.59 68.60 2.03 50.12 16 12 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 13 H -0.31 -17.18 7.11 99.48 0.71 -16.47 16 14 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 15 C 0.17 8.27 4.91 86.35 0.42 8.70 16 16 C 0.14 4.97 2.24 45.07 0.10 5.07 16 17 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 18 N -0.68 -19.99 4.26 -442.15 -1.88 -21.87 16 19 C 0.50 16.76 7.87 87.66 0.69 17.44 16 20 O -0.58 -26.64 16.09 -3.06 -0.05 -26.69 16 21 C 0.09 2.27 6.72 85.63 0.58 2.84 16 22 N -0.26 -8.59 2.82 -338.77 -0.95 -9.55 16 23 N -0.14 -5.88 13.19 37.02 0.49 -5.39 16 24 N -0.30 -12.35 12.40 -48.99 -0.61 -12.96 16 25 C -0.04 -1.38 7.11 41.75 0.30 -1.08 16 26 C 0.00 -0.04 6.76 41.50 0.28 0.24 16 27 C -0.05 -0.72 5.97 29.94 0.18 -0.54 16 28 C -0.11 -1.12 5.90 30.78 0.18 -0.94 16 29 C -0.12 -1.62 5.90 30.77 0.18 -1.44 16 30 C -0.03 -0.66 6.30 29.96 0.19 -0.47 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.88 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 0.96 7.54 -2.39 -0.02 0.94 16 34 H 0.07 1.54 6.40 -2.39 -0.02 1.52 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 2.06 7.93 -2.38 -0.02 2.05 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16 38 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 39 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 40 H 0.04 2.55 6.06 -2.39 -0.01 2.54 16 41 H 0.41 9.33 6.63 -92.71 -0.61 8.72 16 42 H 0.19 2.09 7.71 -2.39 -0.02 2.07 16 43 H 0.14 3.36 8.14 -2.38 -0.02 3.34 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.11 0.98 7.87 -2.39 -0.02 0.96 16 46 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.08 0.73 8.12 -2.39 -0.02 0.71 16 48 H 0.05 0.92 8.12 -2.39 -0.02 0.90 16 49 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -90.23 399.05 3.22 -87.01 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.32 Total: 14.54 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 5.67 Total: 14.01 kcal Atomic # 7 Polarization: -134.25 SS G_CDS: -4.75 Total: -139.00 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -90.23 3.22 -87.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968331593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.066 kcal (2) G-P(sol) polarization free energy of solvation -90.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds