Wall clock time and date at job start Wed Apr 1 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.69854 * 2 1 4 4 C 1.53199 * 109.58374 * 120.35450 * 2 1 3 5 5 H 1.08998 * 109.49484 * 54.43466 * 4 2 1 6 6 N 1.46497 * 109.49550 * 294.37384 * 4 2 1 7 7 C 1.34778 * 120.00001 * 155.06975 * 6 4 2 8 8 O 1.21283 * 119.99935 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99884 * 179.97438 * 7 6 4 10 10 N 1.46502 * 109.46926 * 179.97438 * 9 7 6 11 11 N 1.29108 * 126.00963 * 269.69183 * 10 9 7 12 12 N 1.29017 * 110.25898 * 179.83229 * 11 10 9 13 13 C 1.32909 * 108.63669 * 0.36096 * 12 11 10 14 14 C 1.34405 * 126.00583 * 90.00232 * 10 9 7 15 15 C 1.50528 * 129.25426 * 0.17946 * 14 10 9 16 16 C 1.53427 * 108.33021 * 163.48762 * 15 14 10 17 17 C 1.53106 * 109.56076 * 49.69757 * 16 15 14 18 18 C 1.50597 * 129.16344 * 179.91662 * 13 12 11 19 19 C 1.53036 * 109.33890 * 174.40776 * 4 2 1 20 20 C 1.53048 * 109.53375 * 298.65046 * 19 4 2 21 21 C 1.53191 * 109.31448 * 61.36468 * 20 19 4 22 22 N 1.46923 * 108.77485 * 305.36553 * 21 20 19 23 23 C 1.36937 * 120.62860 * 233.60706 * 22 21 20 24 24 H 1.08000 * 119.99509 * 150.88746 * 23 22 21 25 25 C 1.38818 * 120.00119 * 330.88843 * 23 22 21 26 26 N 1.31616 * 120.00017 * 160.73791 * 25 23 22 27 27 Si 1.86797 * 120.00006 * 340.73870 * 25 23 22 28 28 H 1.48501 * 109.47264 * 92.30836 * 27 25 23 29 29 H 1.48493 * 109.47390 * 212.31102 * 27 25 23 30 30 H 1.48502 * 109.46987 * 332.31197 * 27 25 23 31 31 H 1.09005 * 109.47312 * 299.64708 * 1 2 3 32 32 H 1.08996 * 109.47052 * 59.64633 * 1 2 3 33 33 H 1.09002 * 109.47373 * 179.64922 * 1 2 3 34 34 H 0.97000 * 120.00018 * 335.06344 * 6 4 2 35 35 H 1.09002 * 109.47544 * 60.00227 * 9 7 6 36 36 H 1.08998 * 109.47319 * 299.99592 * 9 7 6 37 37 H 1.09003 * 109.69681 * 283.17266 * 15 14 10 38 38 H 1.09006 * 109.69344 * 43.75261 * 15 14 10 39 39 H 1.08993 * 109.44628 * 289.67036 * 16 15 14 40 40 H 1.08998 * 109.45895 * 169.72342 * 16 15 14 41 41 H 1.09001 * 109.45567 * 169.91487 * 17 16 15 42 42 H 1.08993 * 109.45556 * 49.97455 * 17 16 15 43 43 H 1.09007 * 109.68783 * 283.15715 * 18 13 12 44 44 H 1.08999 * 109.69411 * 43.73469 * 18 13 12 45 45 H 1.08999 * 109.46315 * 58.66729 * 19 4 2 46 46 H 1.08995 * 109.46448 * 178.63344 * 19 4 2 47 47 H 1.09000 * 109.49443 * 181.32124 * 20 19 4 48 48 H 1.09005 * 109.49708 * 301.40929 * 20 19 4 49 49 H 1.09001 * 109.58399 * 65.15069 * 21 20 19 50 50 H 1.09001 * 109.58717 * 185.43179 * 21 20 19 51 51 H 0.97001 * 120.00096 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2455 5 1 1.6024 -1.7251 1.2917 6 7 1.6704 0.0267 2.4435 7 6 1.5484 -0.6046 3.6280 8 8 1.7470 -1.7987 3.7020 9 6 1.1652 0.1734 4.8605 10 7 1.0988 -0.7333 6.0093 11 7 0.0538 -1.3786 6.4075 12 7 0.3373 -2.0910 7.4451 13 6 1.6172 -1.9052 7.7512 14 6 2.1135 -1.0351 6.8373 15 6 3.5365 -0.5446 6.8184 16 6 4.1696 -0.8477 8.1827 17 6 3.9123 -2.3107 8.5535 18 6 2.4242 -2.5064 8.8716 19 6 3.5674 -0.8487 1.1707 20 6 3.9568 -1.6665 -0.0629 21 6 3.4656 -0.9474 -1.3232 22 7 2.0232 -0.6993 -1.1944 23 6 1.1545 -1.1123 -2.1690 24 1 0.1370 -1.3678 -1.9124 25 6 1.5816 -1.2025 -3.4867 26 7 0.9089 -1.9362 -4.3478 27 14 3.1112 -0.2827 -4.0379 28 1 4.2959 -1.1682 -3.9054 29 1 2.9570 0.1290 -5.4562 30 1 3.2965 0.9223 -3.1900 31 1 -0.3634 0.5084 0.8932 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3634 -1.0276 -0.0063 34 1 1.5114 0.9818 2.3843 35 1 0.1911 0.6385 4.7084 36 1 1.9110 0.9455 5.0493 37 1 4.0918 -1.0587 6.0339 38 1 3.5522 0.5300 6.6363 39 1 3.7292 -0.1985 8.9393 40 1 5.2437 -0.6695 8.1322 41 1 4.5080 -2.5739 9.4276 42 1 4.1921 -2.9517 7.7176 43 1 2.1802 -2.0067 9.8091 44 1 2.2030 -3.5706 8.9536 45 1 4.0066 0.1464 1.1001 46 1 3.9372 -1.3458 2.0674 47 1 5.0410 -1.7710 -0.1027 48 1 3.4977 -2.6535 -0.0049 49 1 3.9914 0.0014 -1.4309 50 1 3.6547 -1.5711 -2.1970 51 1 1.2071 -1.9990 -5.2687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993818212.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:22 Heat of formation + Delta-G solvation = 77.900516 kcal Electronic energy + Delta-G solvation = -31607.465025 eV Core-core repulsion = 27544.289016 eV Total energy + Delta-G solvation = -4063.176009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.55245 -40.11641 -38.12568 -37.35159 -35.01428 -34.64229 -32.88601 -31.89212 -31.02399 -30.37999 -30.20818 -28.50003 -26.43165 -24.98666 -24.42966 -23.17713 -22.88918 -21.69642 -21.00408 -20.50060 -19.90085 -19.70844 -17.85310 -17.56038 -16.58352 -16.20512 -15.89124 -15.65045 -15.23208 -15.12393 -14.50472 -14.33059 -14.25628 -14.10604 -13.98983 -13.91319 -13.67073 -13.60820 -13.38716 -12.78161 -12.51131 -12.46184 -12.08297 -11.92230 -11.70777 -11.50846 -11.47217 -11.39811 -11.35431 -11.31789 -11.00930 -10.78758 -10.65180 -10.61282 -10.53366 -10.45583 -10.06354 -9.87524 -9.62382 -9.52817 -9.03151 -8.96224 -8.68732 -7.06126 -6.00116 -3.40120 1.35909 1.97388 2.31512 2.44901 3.01533 3.26754 3.42432 3.44657 3.88389 4.12647 4.32307 4.33480 4.42662 4.46829 4.51284 4.56574 4.66833 4.81632 5.01670 5.08246 5.11785 5.15643 5.22043 5.24018 5.34443 5.42493 5.44441 5.52900 5.59110 5.61196 5.75180 5.76060 5.82825 5.89479 5.92704 6.06251 6.10350 6.10777 6.18065 6.28550 6.32201 6.34298 6.36835 6.43366 6.61346 6.68858 6.85876 6.93745 7.32352 7.87980 7.99387 8.28573 8.41265 8.85490 9.64888 9.99683 11.15082 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.002434 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.630637 B =11498.879675 C =12076.994109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.172 3.828 3 H 0.034 0.966 4 C 0.130 3.870 5 H 0.092 0.908 6 N -0.711 5.711 7 C 0.499 3.501 8 O -0.517 6.517 9 C 0.093 3.907 10 N -0.267 5.267 11 N -0.083 5.083 12 N -0.260 5.260 13 C -0.022 4.022 14 C -0.008 4.008 15 C -0.047 4.047 16 C -0.113 4.113 17 C -0.121 4.121 18 C -0.031 4.031 19 C -0.117 4.117 20 C -0.133 4.133 21 C 0.123 3.877 22 N -0.596 5.596 23 C -0.264 4.264 24 H 0.092 0.908 25 C 0.027 3.973 26 N -0.906 5.906 27 Si 0.883 3.117 28 H -0.288 1.288 29 H -0.303 1.303 30 H -0.271 1.271 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.399 0.601 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.067 0.933 49 H 0.026 0.974 50 H 0.075 0.925 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 8.357 24.479 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.065 3.935 3 H 0.051 0.949 4 C 0.025 3.975 5 H 0.110 0.890 6 N -0.362 5.362 7 C 0.281 3.719 8 O -0.392 6.392 9 C -0.033 4.033 10 N -0.058 5.058 11 N -0.061 5.061 12 N -0.125 5.125 13 C -0.162 4.162 14 C -0.141 4.141 15 C -0.087 4.087 16 C -0.151 4.151 17 C -0.159 4.159 18 C -0.070 4.070 19 C -0.156 4.156 20 C -0.172 4.172 21 C -0.002 4.002 22 N -0.320 5.320 23 C -0.392 4.392 24 H 0.110 0.890 25 C -0.172 4.172 26 N -0.548 5.548 27 Si 0.714 3.286 28 H -0.216 1.216 29 H -0.232 1.232 30 H -0.196 1.196 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.234 0.766 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.044 0.956 50 H 0.093 0.907 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.601 7.137 24.028 25.920 hybrid contribution 1.816 1.259 -0.643 2.301 sum 8.417 8.396 23.386 26.234 Atomic orbital electron populations 1.21838 0.94724 1.02450 1.00515 1.20564 0.94008 0.93293 0.85660 0.94894 1.21860 0.95083 0.97267 0.83334 0.88997 1.45988 1.69939 1.12358 1.07919 1.20296 0.78579 0.88440 0.84599 1.90824 1.48886 1.14373 1.85116 1.21895 1.07472 0.91143 0.82787 1.46255 1.07800 1.31414 1.20352 1.78613 1.10468 1.07307 1.09682 1.74791 1.13843 1.16468 1.07406 1.21601 0.92209 1.01340 1.01025 1.21737 0.93791 1.03759 0.94816 1.20215 0.87685 1.00915 0.99848 1.21564 1.00814 0.97216 0.95503 1.21651 0.95342 0.96630 1.02313 1.19935 0.92258 1.00989 0.93855 1.21765 0.95359 1.00101 0.98374 1.22004 0.99640 1.00082 0.95506 1.21414 0.85005 0.97182 0.96638 1.44334 1.02187 1.65818 1.19710 1.18903 0.95761 1.38903 0.85634 0.89031 1.25298 0.97624 0.98562 0.95763 1.69817 1.41258 1.39117 1.04657 0.86949 0.83383 0.81302 0.76986 1.21588 1.23173 1.19608 0.94095 0.91316 0.92145 0.76646 0.84512 0.85159 0.89478 0.90320 0.91211 0.90489 0.90579 0.91220 0.90115 0.89821 0.92468 0.92667 0.92400 0.91461 0.95591 0.90689 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.84 37.16 0.29 -2.06 16 2 C 0.17 3.03 3.03 -67.59 -0.21 2.82 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.13 2.03 1.99 -67.81 -0.14 1.89 16 5 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 6 N -0.71 -8.00 4.57 -53.69 -0.25 -8.25 16 7 C 0.50 6.15 7.86 -10.98 -0.09 6.07 16 8 O -0.52 -9.14 16.09 5.56 0.09 -9.05 16 9 C 0.09 0.78 6.72 -5.19 -0.03 0.75 16 10 N -0.27 -3.29 2.82 -58.43 -0.16 -3.46 16 11 N -0.08 -1.30 13.19 60.35 0.80 -0.50 16 12 N -0.26 -4.09 12.40 33.16 0.41 -3.68 16 13 C -0.02 -0.28 7.11 -83.12 -0.59 -0.87 16 14 C -0.01 -0.08 6.76 -82.50 -0.56 -0.64 16 15 C -0.05 -0.35 5.97 -27.75 -0.17 -0.51 16 16 C -0.11 -0.63 5.90 -26.46 -0.16 -0.79 16 17 C -0.12 -0.78 5.90 -26.46 -0.16 -0.94 16 18 C -0.03 -0.27 6.30 -27.71 -0.17 -0.44 16 19 C -0.12 -1.77 5.46 -26.69 -0.15 -1.92 16 20 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 21 C 0.12 2.54 4.20 -3.71 -0.02 2.53 16 22 N -0.60 -13.25 2.75 -164.77 -0.45 -13.70 16 23 C -0.26 -6.99 9.05 -15.06 -0.14 -7.12 16 24 H 0.09 2.58 6.38 -52.49 -0.34 2.25 16 25 C 0.03 0.75 5.24 -17.43 -0.09 0.66 16 26 N -0.91 -27.15 13.97 55.49 0.78 -26.38 16 27 Si 0.88 21.62 24.34 -169.99 -4.14 17.48 16 28 H -0.29 -6.85 6.62 56.52 0.37 -6.47 16 29 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 30 H -0.27 -6.43 6.63 56.52 0.37 -6.06 16 31 H 0.04 0.54 7.79 -51.93 -0.40 0.14 16 32 H 0.07 1.27 7.66 -51.93 -0.40 0.87 16 33 H 0.06 1.16 7.40 -51.93 -0.38 0.77 16 34 H 0.40 3.07 8.60 -40.82 -0.35 2.72 16 35 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.13 0.54 7.71 -51.93 -0.40 0.14 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.40 7.87 -51.93 -0.41 -0.01 16 39 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.03 0.53 7.03 -51.93 -0.37 0.16 16 50 H 0.08 1.73 4.62 -51.93 -0.24 1.49 16 51 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 392.68 15.07 5.92 5.92 Total: -1.00 -36.24 392.68 -7.90 -44.14 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.36 Total: 0.50 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -2.52 Total: -3.02 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 1.12 Total: -55.96 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.14 Total: 17.48 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.24 -7.90 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993818212.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.042 kcal (2) G-P(sol) polarization free energy of solvation -36.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds