Wall clock time and date at job start Wed Apr 1 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.69854 * 2 1 4 4 C 1.53199 * 109.58374 * 120.35450 * 2 1 3 5 5 H 1.08998 * 109.49484 * 54.43466 * 4 2 1 6 6 N 1.46497 * 109.49550 * 294.37384 * 4 2 1 7 7 C 1.34778 * 120.00001 * 155.06975 * 6 4 2 8 8 O 1.21283 * 119.99935 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99884 * 179.97438 * 7 6 4 10 10 N 1.46502 * 109.46926 * 179.97438 * 9 7 6 11 11 N 1.29108 * 126.00963 * 269.69183 * 10 9 7 12 12 N 1.29017 * 110.25898 * 179.83229 * 11 10 9 13 13 C 1.32909 * 108.63669 * 0.36096 * 12 11 10 14 14 C 1.34405 * 126.00583 * 90.00232 * 10 9 7 15 15 C 1.50528 * 129.25426 * 0.17946 * 14 10 9 16 16 C 1.53427 * 108.33021 * 163.48762 * 15 14 10 17 17 C 1.53106 * 109.56076 * 49.69757 * 16 15 14 18 18 C 1.50597 * 129.16344 * 179.91662 * 13 12 11 19 19 C 1.53036 * 109.33890 * 174.40776 * 4 2 1 20 20 C 1.53048 * 109.53375 * 298.65046 * 19 4 2 21 21 C 1.53191 * 109.31448 * 61.36468 * 20 19 4 22 22 N 1.46923 * 108.77485 * 305.36553 * 21 20 19 23 23 C 1.36937 * 120.62860 * 233.60706 * 22 21 20 24 24 H 1.08000 * 119.99509 * 150.88746 * 23 22 21 25 25 C 1.38818 * 120.00119 * 330.88843 * 23 22 21 26 26 N 1.31616 * 120.00017 * 160.73791 * 25 23 22 27 27 Si 1.86797 * 120.00006 * 340.73870 * 25 23 22 28 28 H 1.48501 * 109.47264 * 92.30836 * 27 25 23 29 29 H 1.48493 * 109.47390 * 212.31102 * 27 25 23 30 30 H 1.48502 * 109.46987 * 332.31197 * 27 25 23 31 31 H 1.09005 * 109.47312 * 299.64708 * 1 2 3 32 32 H 1.08996 * 109.47052 * 59.64633 * 1 2 3 33 33 H 1.09002 * 109.47373 * 179.64922 * 1 2 3 34 34 H 0.97000 * 120.00018 * 335.06344 * 6 4 2 35 35 H 1.09002 * 109.47544 * 60.00227 * 9 7 6 36 36 H 1.08998 * 109.47319 * 299.99592 * 9 7 6 37 37 H 1.09003 * 109.69681 * 283.17266 * 15 14 10 38 38 H 1.09006 * 109.69344 * 43.75261 * 15 14 10 39 39 H 1.08993 * 109.44628 * 289.67036 * 16 15 14 40 40 H 1.08998 * 109.45895 * 169.72342 * 16 15 14 41 41 H 1.09001 * 109.45567 * 169.91487 * 17 16 15 42 42 H 1.08993 * 109.45556 * 49.97455 * 17 16 15 43 43 H 1.09007 * 109.68783 * 283.15715 * 18 13 12 44 44 H 1.08999 * 109.69411 * 43.73469 * 18 13 12 45 45 H 1.08999 * 109.46315 * 58.66729 * 19 4 2 46 46 H 1.08995 * 109.46448 * 178.63344 * 19 4 2 47 47 H 1.09000 * 109.49443 * 181.32124 * 20 19 4 48 48 H 1.09005 * 109.49708 * 301.40929 * 20 19 4 49 49 H 1.09001 * 109.58399 * 65.15069 * 21 20 19 50 50 H 1.09001 * 109.58717 * 185.43179 * 21 20 19 51 51 H 0.97001 * 120.00096 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2455 5 1 1.6024 -1.7251 1.2917 6 7 1.6704 0.0267 2.4435 7 6 1.5484 -0.6046 3.6280 8 8 1.7470 -1.7987 3.7020 9 6 1.1652 0.1734 4.8605 10 7 1.0988 -0.7333 6.0093 11 7 0.0538 -1.3786 6.4075 12 7 0.3373 -2.0910 7.4451 13 6 1.6172 -1.9052 7.7512 14 6 2.1135 -1.0351 6.8373 15 6 3.5365 -0.5446 6.8184 16 6 4.1696 -0.8477 8.1827 17 6 3.9123 -2.3107 8.5535 18 6 2.4242 -2.5064 8.8716 19 6 3.5674 -0.8487 1.1707 20 6 3.9568 -1.6665 -0.0629 21 6 3.4656 -0.9474 -1.3232 22 7 2.0232 -0.6993 -1.1944 23 6 1.1545 -1.1123 -2.1690 24 1 0.1370 -1.3678 -1.9124 25 6 1.5816 -1.2025 -3.4867 26 7 0.9089 -1.9362 -4.3478 27 14 3.1112 -0.2827 -4.0379 28 1 4.2959 -1.1682 -3.9054 29 1 2.9570 0.1290 -5.4562 30 1 3.2965 0.9223 -3.1900 31 1 -0.3634 0.5084 0.8932 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3634 -1.0276 -0.0063 34 1 1.5114 0.9818 2.3843 35 1 0.1911 0.6385 4.7084 36 1 1.9110 0.9455 5.0493 37 1 4.0918 -1.0587 6.0339 38 1 3.5522 0.5300 6.6363 39 1 3.7292 -0.1985 8.9393 40 1 5.2437 -0.6695 8.1322 41 1 4.5080 -2.5739 9.4276 42 1 4.1921 -2.9517 7.7176 43 1 2.1802 -2.0067 9.8091 44 1 2.2030 -3.5706 8.9536 45 1 4.0066 0.1464 1.1001 46 1 3.9372 -1.3458 2.0674 47 1 5.0410 -1.7710 -0.1027 48 1 3.4977 -2.6535 -0.0049 49 1 3.9914 0.0014 -1.4309 50 1 3.6547 -1.5711 -2.1970 51 1 1.2071 -1.9990 -5.2687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993818212.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:21 Heat of formation + Delta-G solvation = 50.987523 kcal Electronic energy + Delta-G solvation = -31608.632060 eV Core-core repulsion = 27544.289016 eV Total energy + Delta-G solvation = -4064.343044 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.43577 -41.24869 -39.52583 -37.94455 -36.14444 -35.79274 -34.47339 -33.55565 -32.10083 -31.35609 -31.06913 -29.46500 -27.86783 -26.73459 -25.10281 -24.54547 -23.60516 -22.79352 -22.43406 -21.57061 -21.15168 -20.51486 -18.89043 -18.46339 -18.31602 -17.41097 -17.10814 -16.74741 -16.47770 -16.13315 -15.91560 -15.31574 -15.22234 -15.14311 -14.91134 -14.83988 -14.79078 -14.68477 -14.44203 -14.28816 -13.69796 -13.60552 -13.44215 -13.04665 -12.97053 -12.93101 -12.58370 -12.54917 -12.48076 -12.22582 -12.07938 -11.98531 -11.92026 -11.81280 -11.67442 -11.54873 -11.41470 -11.32518 -11.32012 -10.85761 -10.65343 -10.16397 -9.81536 -8.92091 -8.13650 -5.49199 0.46907 1.22694 1.32542 1.37928 1.42477 1.51583 1.52103 2.05602 2.44267 3.05182 3.19237 3.27049 3.51204 3.57302 3.73259 3.81666 3.90759 3.91642 3.93788 4.03969 4.04340 4.12168 4.20205 4.36047 4.44602 4.48171 4.57563 4.59846 4.62250 4.63195 4.67322 4.84832 4.87380 4.92611 4.99147 5.00293 5.02431 5.09622 5.11703 5.19383 5.20582 5.23113 5.29090 5.35574 5.41441 5.46350 5.53389 5.59316 5.89438 6.18299 6.41326 6.91394 7.10242 7.46451 7.63367 8.01012 9.05728 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.002434 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.630637 B =11498.879675 C =12076.994109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.169 3.831 3 H 0.067 0.933 4 C 0.144 3.856 5 H 0.046 0.954 6 N -0.692 5.692 7 C 0.501 3.499 8 O -0.577 6.577 9 C 0.092 3.908 10 N -0.268 5.268 11 N -0.129 5.129 12 N -0.302 5.302 13 C -0.044 4.044 14 C -0.002 4.002 15 C -0.048 4.048 16 C -0.110 4.110 17 C -0.119 4.119 18 C -0.033 4.033 19 C -0.108 4.108 20 C -0.128 4.128 21 C 0.117 3.883 22 N -0.613 5.613 23 C -0.243 4.243 24 H 0.057 0.943 25 C -0.039 4.039 26 N -0.962 5.962 27 Si 0.949 3.051 28 H -0.279 1.279 29 H -0.316 1.316 30 H -0.249 1.249 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.024 0.976 34 H 0.423 0.577 35 H 0.163 0.837 36 H 0.186 0.814 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.038 0.962 49 H 0.047 0.953 50 H 0.047 0.953 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.375 12.210 27.115 31.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.063 3.937 3 H 0.085 0.915 4 C 0.037 3.963 5 H 0.064 0.936 6 N -0.345 5.345 7 C 0.286 3.714 8 O -0.455 6.455 9 C -0.031 4.031 10 N -0.059 5.059 11 N -0.106 5.106 12 N -0.166 5.166 13 C -0.184 4.184 14 C -0.136 4.136 15 C -0.087 4.087 16 C -0.147 4.147 17 C -0.157 4.157 18 C -0.072 4.072 19 C -0.146 4.146 20 C -0.167 4.167 21 C -0.008 4.008 22 N -0.338 5.338 23 C -0.373 4.373 24 H 0.075 0.925 25 C -0.233 4.233 26 N -0.608 5.608 27 Si 0.778 3.222 28 H -0.205 1.205 29 H -0.246 1.246 30 H -0.173 1.173 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.181 0.819 36 H 0.203 0.797 37 H 0.100 0.900 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.105 0.895 48 H 0.057 0.943 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.916 11.061 26.714 30.567 hybrid contribution 0.721 -0.005 -1.365 1.544 sum 10.637 11.056 25.349 29.630 Atomic orbital electron populations 1.21771 0.94901 1.00507 1.01721 1.20812 0.94001 0.94452 0.84458 0.91524 1.21321 0.95521 0.95281 0.84140 0.93601 1.45651 1.69330 1.13201 1.06345 1.20926 0.77040 0.87827 0.85604 1.90821 1.51451 1.17234 1.86034 1.22305 1.10657 0.90527 0.79648 1.46558 1.07388 1.31111 1.20878 1.78501 1.12321 1.09080 1.10689 1.74709 1.16022 1.17579 1.08315 1.22336 0.91620 1.01933 1.02528 1.22458 0.95077 1.02569 0.93544 1.20466 0.84754 1.02705 1.00752 1.21605 1.02174 0.96293 0.94666 1.21667 0.93763 0.97451 1.02771 1.20111 0.93357 1.00368 0.93394 1.21694 0.94498 1.01287 0.97166 1.21921 1.01132 0.98613 0.95064 1.21492 0.84177 0.97904 0.97216 1.44478 1.02525 1.66743 1.20100 1.18810 0.95085 1.36712 0.86663 0.92497 1.25974 1.01368 0.99899 0.96050 1.69975 1.44146 1.41762 1.04924 0.85875 0.79957 0.80567 0.75807 1.20547 1.24567 1.17324 0.89746 0.93200 0.95664 0.73842 0.81919 0.79666 0.90009 0.87008 0.90315 0.88101 0.88230 0.92770 0.88666 0.90739 0.89362 0.92210 0.89492 0.94264 0.93497 0.93522 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 7.84 71.98 0.56 -3.85 16 2 C 0.17 5.58 3.03 44.98 0.14 5.71 16 3 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.14 4.21 1.99 45.07 0.09 4.30 16 5 H 0.05 1.80 7.58 -2.39 -0.02 1.78 16 6 N -0.69 -13.06 4.57 -442.16 -2.02 -15.08 16 7 C 0.50 11.06 7.86 87.66 0.69 11.75 16 8 O -0.58 -20.16 16.09 -3.04 -0.05 -20.21 16 9 C 0.09 1.20 6.72 85.63 0.58 1.78 16 10 N -0.27 -6.13 2.82 -338.78 -0.95 -7.08 16 11 N -0.13 -4.05 13.19 37.02 0.49 -3.57 16 12 N -0.30 -9.78 12.40 -48.99 -0.61 -10.38 16 13 C -0.04 -1.07 7.11 41.75 0.30 -0.78 16 14 C 0.00 -0.04 6.76 41.50 0.28 0.24 16 15 C -0.05 -0.51 5.97 29.94 0.18 -0.33 16 16 C -0.11 -0.79 5.90 30.77 0.18 -0.61 16 17 C -0.12 -1.25 5.90 30.77 0.18 -1.07 16 18 C -0.03 -0.54 6.30 29.96 0.19 -0.35 16 19 C -0.11 -2.89 5.46 30.62 0.17 -2.72 16 20 C -0.13 -4.15 6.08 30.67 0.19 -3.97 16 21 C 0.12 4.60 4.20 86.36 0.36 4.96 16 22 N -0.61 -26.87 2.75 -675.21 -1.86 -28.72 16 23 C -0.24 -13.28 9.05 84.03 0.76 -12.52 16 24 H 0.06 3.43 6.38 -2.91 -0.02 3.41 16 25 C -0.04 -2.22 5.24 84.86 0.45 -1.77 16 26 N -0.96 -60.41 13.97 21.65 0.30 -60.11 16 27 Si 0.95 45.00 24.34 68.60 1.67 46.67 16 28 H -0.28 -12.62 6.62 99.48 0.66 -11.96 16 29 H -0.32 -15.53 7.11 99.48 0.71 -14.82 16 30 H -0.25 -10.80 6.63 99.48 0.66 -10.14 16 31 H 0.08 2.04 7.79 -2.38 -0.02 2.02 16 32 H 0.05 1.85 7.66 -2.39 -0.02 1.83 16 33 H 0.02 0.99 7.40 -2.39 -0.02 0.98 16 34 H 0.42 4.14 8.60 -92.71 -0.80 3.35 16 35 H 0.16 1.31 8.14 -2.39 -0.02 1.30 16 36 H 0.19 0.33 7.71 -2.39 -0.02 0.31 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 0.47 7.87 -2.38 -0.02 0.46 16 39 H 0.08 0.47 8.12 -2.39 -0.02 0.45 16 40 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.05 0.74 8.12 -2.39 -0.02 0.72 16 43 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.04 1.47 8.14 -2.38 -0.02 1.46 16 49 H 0.05 1.68 7.03 -2.39 -0.02 1.67 16 50 H 0.05 2.10 4.62 -2.39 -0.01 2.09 16 51 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -88.37 392.68 2.31 -86.06 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.05 Total: 11.64 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 5.29 Total: 0.78 kcal Atomic # 7 Polarization: -120.30 SS G_CDS: -4.65 Total: -124.95 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.05 Total: -20.21 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.67 Total: 46.67 kcal Total: -88.37 2.31 -86.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993818212.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.049 kcal (2) G-P(sol) polarization free energy of solvation -88.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds