Wall clock time and date at job start Wed Apr 1 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.69747 * 2 1 4 4 C 1.53184 * 109.58694 * 120.35537 * 2 1 3 5 5 H 1.09001 * 109.49996 * 294.41088 * 4 2 1 6 6 N 1.46503 * 109.49575 * 54.47280 * 4 2 1 7 7 C 1.34777 * 119.99823 * 204.93380 * 6 4 2 8 8 O 1.21274 * 120.00273 * 0.02562 * 7 6 4 9 9 C 1.50700 * 119.99984 * 179.72889 * 7 6 4 10 10 C 1.50701 * 109.47535 * 180.02562 * 9 7 6 11 11 N 1.30831 * 125.96349 * 90.01617 * 10 9 7 12 12 C 1.33238 * 109.82490 * 180.02562 * 11 10 9 13 13 C 1.50703 * 125.52226 * 179.97438 * 12 11 10 14 14 C 1.53004 * 117.50082 * 188.61883 * 13 12 11 15 15 C 1.52995 * 59.99972 * 252.51007 * 14 13 12 16 16 N 1.30709 * 108.95457 * 359.97438 * 12 11 10 17 17 N 1.34434 * 125.95705 * 269.71886 * 10 9 7 18 18 C 1.46495 * 126.82401 * 359.97438 * 17 10 9 19 19 C 1.53040 * 109.34127 * 174.43980 * 4 2 1 20 20 C 1.53040 * 109.53687 * 298.62285 * 19 4 2 21 21 C 1.53193 * 109.31459 * 61.36256 * 20 19 4 22 22 N 1.46928 * 108.77190 * 305.36358 * 21 20 19 23 23 C 1.36932 * 120.62589 * 233.62484 * 22 21 20 24 24 H 1.08000 * 119.99464 * 150.18425 * 23 22 21 25 25 C 1.38808 * 120.00687 * 330.18288 * 23 22 21 26 26 N 1.31615 * 119.99862 * 344.47784 * 25 23 22 27 27 Si 1.86803 * 120.00318 * 164.47172 * 25 23 22 28 28 H 1.48502 * 109.46901 * 90.00016 * 27 25 23 29 29 H 1.48498 * 109.47216 * 210.00222 * 27 25 23 30 30 H 1.48503 * 109.47075 * 330.00582 * 27 25 23 31 31 H 1.08994 * 109.47382 * 299.64052 * 1 2 3 32 32 H 1.08996 * 109.47002 * 59.64564 * 1 2 3 33 33 H 1.09002 * 109.47082 * 179.63923 * 1 2 3 34 34 H 0.96995 * 119.99900 * 24.94033 * 6 4 2 35 35 H 1.09001 * 109.46748 * 299.99893 * 9 7 6 36 36 H 1.09000 * 109.47458 * 59.99507 * 9 7 6 37 37 H 1.09000 * 115.55375 * 334.32810 * 13 12 11 38 38 H 1.09001 * 117.49638 * 0.02562 * 14 13 12 39 39 H 1.08999 * 117.50042 * 145.01574 * 14 13 12 40 40 H 1.08995 * 117.49827 * 252.50203 * 15 14 13 41 41 H 1.09000 * 117.49514 * 107.49129 * 15 14 13 42 42 H 1.08996 * 109.47346 * 90.00057 * 18 17 10 43 43 H 1.09002 * 109.47000 * 210.00710 * 18 17 10 44 44 H 1.09008 * 109.47371 * 330.00047 * 18 17 10 45 45 H 1.09004 * 109.45590 * 58.63872 * 19 4 2 46 46 H 1.08997 * 109.46004 * 178.61181 * 19 4 2 47 47 H 1.09006 * 109.49708 * 181.31597 * 20 19 4 48 48 H 1.08997 * 109.49831 * 301.40764 * 20 19 4 49 49 H 1.08996 * 109.58459 * 65.15276 * 21 20 19 50 50 H 1.09000 * 109.58393 * 185.57749 * 21 20 19 51 51 H 0.96998 * 120.00406 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 1.2453 5 1 1.7655 -0.1671 2.1368 6 7 1.4514 -2.0679 1.3070 7 6 1.3296 -2.6970 2.4927 8 8 1.7098 -2.1547 3.5087 9 6 0.7149 -4.0714 2.5569 10 6 0.6957 -4.5469 3.9868 11 7 -0.2710 -4.3555 4.8473 12 6 0.0476 -4.9106 6.0159 13 6 -0.8120 -4.9000 7.2537 14 6 -0.1872 -5.4145 8.5521 15 6 -1.2424 -6.2518 7.8266 16 7 1.2266 -5.4659 5.9147 17 7 1.6667 -5.2466 4.5991 18 6 2.9335 -5.6897 4.0117 19 6 3.5675 -0.8479 1.1709 20 6 3.9576 -1.6658 -0.0623 21 6 3.4664 -0.9473 -1.3230 22 7 2.0238 -0.7000 -1.1945 23 6 1.1555 -1.1142 -2.1690 24 1 0.1414 -1.3810 -1.9107 25 6 1.5787 -1.1909 -3.4888 26 7 2.6893 -0.5901 -3.8598 27 14 0.5718 -2.1472 -4.7384 28 1 -0.4220 -1.2423 -5.3700 29 1 1.4727 -2.6987 -5.7821 30 1 -0.1357 -3.2605 -4.0563 31 1 -0.3634 0.5082 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3633 -1.0277 -0.0065 34 1 1.1471 -2.5015 0.4944 35 1 -0.3048 -4.0315 2.1740 36 1 1.3034 -4.7613 1.9521 37 1 -1.5191 -4.0738 7.3280 38 1 0.8457 -5.7603 8.5111 39 1 -0.4831 -4.9267 9.4809 40 1 -2.2324 -6.3150 8.2780 41 1 -0.9037 -7.1489 7.3082 42 1 3.6924 -4.9223 4.1633 43 1 3.2520 -6.6156 4.4908 44 1 2.7985 -5.8612 2.9437 45 1 4.0061 0.1475 1.1001 46 1 3.9373 -1.3447 2.0679 47 1 5.0420 -1.7697 -0.1019 48 1 3.4991 -2.6529 -0.0042 49 1 3.9917 0.0016 -1.4308 50 1 3.6537 -1.5723 -2.1962 51 1 2.9853 -0.6440 -4.7819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994497878.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:00 Heat of formation + Delta-G solvation = 98.483034 kcal Electronic energy + Delta-G solvation = -31521.085653 eV Core-core repulsion = 27458.802168 eV Total energy + Delta-G solvation = -4062.283484 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.24071 -39.79746 -37.76555 -37.33501 -34.01837 -33.98306 -32.82857 -32.36080 -31.70016 -29.78298 -28.65041 -27.36852 -26.22877 -25.06490 -23.87390 -22.64574 -22.42391 -21.32169 -20.80759 -20.20805 -19.76317 -18.80840 -17.31329 -17.12957 -16.51209 -15.89384 -15.67931 -15.39739 -15.20663 -15.10361 -14.71372 -14.07237 -13.90591 -13.83924 -13.65091 -13.45791 -13.33262 -13.14635 -12.98582 -12.65577 -12.33757 -12.22714 -11.93941 -11.82765 -11.65211 -11.31343 -11.29671 -11.06993 -11.04127 -10.74787 -10.74372 -10.68775 -10.57964 -10.18874 -10.09174 -9.99893 -9.88350 -9.73633 -9.59401 -9.37527 -9.22903 -8.64154 -8.52798 -6.73948 -5.88099 -3.33771 1.48351 2.18173 2.66535 2.79243 3.29580 3.37138 3.38141 3.45377 3.69879 3.84641 4.24493 4.35536 4.39018 4.63808 4.73079 4.78366 4.91704 4.97200 5.01838 5.19129 5.24503 5.26468 5.28522 5.39357 5.44635 5.50932 5.54769 5.58314 5.67191 5.87340 5.89006 5.92899 6.06501 6.16953 6.23842 6.25868 6.37295 6.38090 6.45649 6.57474 6.60015 6.69307 6.70967 6.87069 6.91683 7.02857 7.29463 7.58372 7.71506 7.87026 8.08658 8.35148 8.47358 9.11257 9.74109 10.31672 11.19934 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.002514 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.883072 B =11135.260021 C =11440.965500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.040 0.960 4 C 0.136 3.864 5 H 0.076 0.924 6 N -0.696 5.696 7 C 0.515 3.485 8 O -0.543 6.543 9 C -0.070 4.070 10 C 0.310 3.690 11 N -0.528 5.528 12 C 0.254 3.746 13 C -0.068 4.068 14 C -0.161 4.161 15 C -0.160 4.160 16 N -0.318 5.318 17 N -0.373 5.373 18 C 0.095 3.905 19 C -0.121 4.121 20 C -0.139 4.139 21 C 0.171 3.829 22 N -0.586 5.586 23 C -0.257 4.257 24 H 0.071 0.929 25 C 0.007 3.993 26 N -0.899 5.899 27 Si 0.899 3.101 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.410 0.590 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.046 0.954 48 H 0.052 0.948 49 H 0.018 0.982 50 H 0.085 0.915 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 -10.159 15.676 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 H 0.057 0.943 4 C 0.030 3.970 5 H 0.094 0.906 6 N -0.347 5.347 7 C 0.299 3.701 8 O -0.420 6.420 9 C -0.112 4.112 10 C 0.033 3.967 11 N -0.255 5.255 12 C -0.028 4.028 13 C -0.089 4.089 14 C -0.199 4.199 15 C -0.198 4.198 16 N -0.147 5.147 17 N -0.162 5.162 18 C -0.047 4.047 19 C -0.159 4.159 20 C -0.178 4.178 21 C 0.046 3.954 22 N -0.310 5.310 23 C -0.387 4.387 24 H 0.088 0.912 25 C -0.193 4.193 26 N -0.543 5.543 27 Si 0.729 3.271 28 H -0.214 1.214 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.247 0.753 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.036 0.964 50 H 0.104 0.896 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.703 -9.980 16.653 19.489 hybrid contribution -0.245 -0.539 -1.540 1.650 sum -1.948 -10.519 15.113 18.516 Atomic orbital electron populations 1.21777 0.95499 1.01517 1.00513 1.20741 0.93445 0.93919 0.86747 0.94277 1.21552 0.92813 0.82747 0.99925 0.90587 1.45929 1.61430 1.18711 1.08661 1.19956 0.79364 0.86585 0.84226 1.90726 1.49972 1.67028 1.34317 1.20229 1.06117 0.96383 0.88509 1.23308 0.85143 0.92384 0.95890 1.70220 1.28752 1.25886 1.00617 1.23004 0.90996 0.94978 0.93813 1.20034 1.00687 0.99961 0.88222 1.23024 0.99363 1.03000 0.94535 1.23017 0.99935 0.93816 1.03052 1.77884 1.14155 1.27194 0.95440 1.50045 1.16425 1.41571 1.08192 1.21967 0.82143 1.01920 0.98665 1.21768 0.95492 1.00550 0.98114 1.22138 0.98887 0.99462 0.97347 1.20787 0.83225 0.97183 0.94216 1.44184 1.03065 1.64852 1.18860 1.19125 0.95204 1.38212 0.86136 0.91177 1.25117 0.97770 0.99362 0.97032 1.70019 1.23974 1.43481 1.16785 0.86360 0.79403 0.79948 0.81366 1.21434 1.21698 1.20436 0.94141 0.91776 0.92722 0.75324 0.85100 0.86718 0.85183 0.87912 0.87927 0.87821 0.88650 0.89945 0.88963 0.88981 0.91886 0.93292 0.93496 0.92911 0.96401 0.89629 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.73 37.16 0.29 -2.05 16 2 C 0.16 2.97 3.20 -67.57 -0.22 2.75 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.14 2.27 2.32 -67.81 -0.16 2.11 16 5 H 0.08 1.33 7.58 -51.93 -0.39 0.93 16 6 N -0.70 -10.44 3.47 -53.69 -0.19 -10.63 16 7 C 0.52 7.70 7.79 -10.98 -0.09 7.61 16 8 O -0.54 -10.21 15.70 5.56 0.09 -10.12 16 9 C -0.07 -0.81 6.03 -29.03 -0.17 -0.99 16 10 C 0.31 4.44 6.48 -155.69 -1.01 3.43 16 11 N -0.53 -8.50 11.19 -8.16 -0.09 -8.59 16 12 C 0.25 3.78 7.69 -156.86 -1.21 2.57 16 13 C -0.07 -0.77 6.33 -91.77 -0.58 -1.35 16 14 C -0.16 -1.45 10.13 -26.73 -0.27 -1.72 16 15 C -0.16 -1.38 10.23 -26.73 -0.27 -1.66 16 16 N -0.32 -4.73 12.24 32.42 0.40 -4.33 16 17 N -0.37 -5.02 4.04 -65.10 -0.26 -5.29 16 18 C 0.10 0.86 11.33 59.84 0.68 1.54 16 19 C -0.12 -2.00 5.58 -26.69 -0.15 -2.15 16 20 C -0.14 -2.42 5.93 -26.61 -0.16 -2.57 16 21 C 0.17 3.69 5.28 -3.71 -0.02 3.67 16 22 N -0.59 -12.70 2.64 -164.73 -0.44 -13.14 16 23 C -0.26 -6.13 8.58 -15.06 -0.13 -6.26 16 24 H 0.07 1.61 6.23 -52.49 -0.33 1.29 16 25 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 26 N -0.90 -24.30 11.23 55.49 0.62 -23.67 16 27 Si 0.90 20.02 29.58 -169.99 -5.03 15.00 16 28 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 30 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 33 H 0.05 0.91 6.37 -51.93 -0.33 0.58 16 34 H 0.41 6.10 7.77 -40.82 -0.32 5.79 16 35 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.11 0.95 7.12 -51.93 -0.37 0.58 16 37 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.10 1.03 7.88 -51.93 -0.41 0.62 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.60 7.10 -51.92 -0.37 0.23 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.90 7.53 -51.93 -0.39 0.50 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 2.08 6.14 -51.93 -0.32 1.76 16 51 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 406.53 15.07 6.13 6.13 Total: -1.00 -32.23 406.53 -10.58 -42.80 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -8.26 Total: 6.83 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -3.55 Total: 5.01 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: 0.04 Total: -65.64 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.23 -10.58 -42.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994497878.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.287 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds