Wall clock time and date at job start Wed Apr 1 2020 06:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.69747 * 2 1 4 4 C 1.53184 * 109.58694 * 120.35537 * 2 1 3 5 5 H 1.09001 * 109.49996 * 294.41088 * 4 2 1 6 6 N 1.46503 * 109.49575 * 54.47280 * 4 2 1 7 7 C 1.34777 * 119.99823 * 204.93380 * 6 4 2 8 8 O 1.21274 * 120.00273 * 0.02562 * 7 6 4 9 9 C 1.50700 * 119.99984 * 179.72889 * 7 6 4 10 10 C 1.50701 * 109.47535 * 180.02562 * 9 7 6 11 11 N 1.30831 * 125.96349 * 90.01617 * 10 9 7 12 12 C 1.33238 * 109.82490 * 180.02562 * 11 10 9 13 13 C 1.50703 * 125.52226 * 179.97438 * 12 11 10 14 14 C 1.53004 * 117.50082 * 188.61883 * 13 12 11 15 15 C 1.52995 * 59.99972 * 252.51007 * 14 13 12 16 16 N 1.30709 * 108.95457 * 359.97438 * 12 11 10 17 17 N 1.34434 * 125.95705 * 269.71886 * 10 9 7 18 18 C 1.46495 * 126.82401 * 359.97438 * 17 10 9 19 19 C 1.53040 * 109.34127 * 174.43980 * 4 2 1 20 20 C 1.53040 * 109.53687 * 298.62285 * 19 4 2 21 21 C 1.53193 * 109.31459 * 61.36256 * 20 19 4 22 22 N 1.46928 * 108.77190 * 305.36358 * 21 20 19 23 23 C 1.36932 * 120.62589 * 233.62484 * 22 21 20 24 24 H 1.08000 * 119.99464 * 150.18425 * 23 22 21 25 25 C 1.38808 * 120.00687 * 330.18288 * 23 22 21 26 26 N 1.31615 * 119.99862 * 344.47784 * 25 23 22 27 27 Si 1.86803 * 120.00318 * 164.47172 * 25 23 22 28 28 H 1.48502 * 109.46901 * 90.00016 * 27 25 23 29 29 H 1.48498 * 109.47216 * 210.00222 * 27 25 23 30 30 H 1.48503 * 109.47075 * 330.00582 * 27 25 23 31 31 H 1.08994 * 109.47382 * 299.64052 * 1 2 3 32 32 H 1.08996 * 109.47002 * 59.64564 * 1 2 3 33 33 H 1.09002 * 109.47082 * 179.63923 * 1 2 3 34 34 H 0.96995 * 119.99900 * 24.94033 * 6 4 2 35 35 H 1.09001 * 109.46748 * 299.99893 * 9 7 6 36 36 H 1.09000 * 109.47458 * 59.99507 * 9 7 6 37 37 H 1.09000 * 115.55375 * 334.32810 * 13 12 11 38 38 H 1.09001 * 117.49638 * 0.02562 * 14 13 12 39 39 H 1.08999 * 117.50042 * 145.01574 * 14 13 12 40 40 H 1.08995 * 117.49827 * 252.50203 * 15 14 13 41 41 H 1.09000 * 117.49514 * 107.49129 * 15 14 13 42 42 H 1.08996 * 109.47346 * 90.00057 * 18 17 10 43 43 H 1.09002 * 109.47000 * 210.00710 * 18 17 10 44 44 H 1.09008 * 109.47371 * 330.00047 * 18 17 10 45 45 H 1.09004 * 109.45590 * 58.63872 * 19 4 2 46 46 H 1.08997 * 109.46004 * 178.61181 * 19 4 2 47 47 H 1.09006 * 109.49708 * 181.31597 * 20 19 4 48 48 H 1.08997 * 109.49831 * 301.40764 * 20 19 4 49 49 H 1.08996 * 109.58459 * 65.15276 * 21 20 19 50 50 H 1.09000 * 109.58393 * 185.57749 * 21 20 19 51 51 H 0.96998 * 120.00406 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 1.2453 5 1 1.7655 -0.1671 2.1368 6 7 1.4514 -2.0679 1.3070 7 6 1.3296 -2.6970 2.4927 8 8 1.7098 -2.1547 3.5087 9 6 0.7149 -4.0714 2.5569 10 6 0.6957 -4.5469 3.9868 11 7 -0.2710 -4.3555 4.8473 12 6 0.0476 -4.9106 6.0159 13 6 -0.8120 -4.9000 7.2537 14 6 -0.1872 -5.4145 8.5521 15 6 -1.2424 -6.2518 7.8266 16 7 1.2266 -5.4659 5.9147 17 7 1.6667 -5.2466 4.5991 18 6 2.9335 -5.6897 4.0117 19 6 3.5675 -0.8479 1.1709 20 6 3.9576 -1.6658 -0.0623 21 6 3.4664 -0.9473 -1.3230 22 7 2.0238 -0.7000 -1.1945 23 6 1.1555 -1.1142 -2.1690 24 1 0.1414 -1.3810 -1.9107 25 6 1.5787 -1.1909 -3.4888 26 7 2.6893 -0.5901 -3.8598 27 14 0.5718 -2.1472 -4.7384 28 1 -0.4220 -1.2423 -5.3700 29 1 1.4727 -2.6987 -5.7821 30 1 -0.1357 -3.2605 -4.0563 31 1 -0.3634 0.5082 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3633 -1.0277 -0.0065 34 1 1.1471 -2.5015 0.4944 35 1 -0.3048 -4.0315 2.1740 36 1 1.3034 -4.7613 1.9521 37 1 -1.5191 -4.0738 7.3280 38 1 0.8457 -5.7603 8.5111 39 1 -0.4831 -4.9267 9.4809 40 1 -2.2324 -6.3150 8.2780 41 1 -0.9037 -7.1489 7.3082 42 1 3.6924 -4.9223 4.1633 43 1 3.2520 -6.6156 4.4908 44 1 2.7985 -5.8612 2.9437 45 1 4.0061 0.1475 1.1001 46 1 3.9373 -1.3447 2.0679 47 1 5.0420 -1.7697 -0.1019 48 1 3.4991 -2.6529 -0.0042 49 1 3.9917 0.0016 -1.4308 50 1 3.6537 -1.5723 -2.1962 51 1 2.9853 -0.6440 -4.7819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994497878.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:31:59 Heat of formation + Delta-G solvation = 79.985245 kcal Electronic energy + Delta-G solvation = -31521.887777 eV Core-core repulsion = 27458.802168 eV Total energy + Delta-G solvation = -4063.085608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.23921 -41.11175 -39.17881 -38.14763 -35.59035 -34.89416 -34.11835 -33.66202 -33.24889 -31.27810 -29.77240 -28.25917 -27.70136 -26.78232 -24.74075 -23.95620 -23.29213 -22.62490 -22.28547 -21.25902 -20.77393 -20.27774 -18.44617 -18.24474 -18.01016 -17.09351 -16.86889 -16.63657 -16.38989 -16.30668 -15.71261 -15.65694 -15.21800 -15.11571 -14.85705 -14.63869 -14.40067 -14.30158 -14.20190 -14.14734 -13.52292 -13.19498 -13.10227 -12.92847 -12.84122 -12.70820 -12.66235 -12.39309 -12.38128 -12.31247 -12.14413 -11.89937 -11.86405 -11.63256 -11.47190 -11.34746 -11.08842 -11.02973 -10.98760 -10.69441 -10.46038 -10.17157 -9.92100 -8.56854 -7.77911 -5.24567 0.47278 1.31513 1.53171 1.56586 1.63296 1.63814 1.65977 2.33860 2.57887 2.82751 3.00186 3.37804 3.39086 3.50397 3.62139 3.84810 3.89068 4.00340 4.06735 4.08181 4.10574 4.23927 4.24133 4.27944 4.41939 4.44131 4.57875 4.60589 4.63003 4.69558 4.74837 4.80917 4.90661 4.98135 5.02596 5.07359 5.12095 5.16169 5.23606 5.26660 5.29515 5.37795 5.39208 5.49434 5.58828 5.65428 5.78216 5.79519 5.84371 6.48353 6.66058 7.06421 7.23460 7.28915 7.93426 8.47205 9.28789 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.002514 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.883072 B =11135.260021 C =11440.965500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.156 3.844 3 H 0.025 0.975 4 C 0.147 3.853 5 H 0.073 0.927 6 N -0.690 5.690 7 C 0.522 3.478 8 O -0.582 6.582 9 C -0.062 4.062 10 C 0.298 3.702 11 N -0.561 5.561 12 C 0.239 3.761 13 C -0.096 4.096 14 C -0.152 4.152 15 C -0.142 4.142 16 N -0.339 5.339 17 N -0.375 5.375 18 C 0.085 3.915 19 C -0.114 4.114 20 C -0.123 4.123 21 C 0.178 3.822 22 N -0.594 5.594 23 C -0.244 4.244 24 H 0.083 0.917 25 C -0.050 4.050 26 N -0.937 5.937 27 Si 0.958 3.042 28 H -0.295 1.295 29 H -0.303 1.303 30 H -0.261 1.261 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.414 0.586 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.063 0.937 49 H -0.011 1.011 50 H 0.056 0.944 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 -11.992 16.866 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.043 0.957 4 C 0.040 3.960 5 H 0.091 0.909 6 N -0.341 5.341 7 C 0.307 3.693 8 O -0.462 6.462 9 C -0.104 4.104 10 C 0.021 3.979 11 N -0.289 5.289 12 C -0.042 4.042 13 C -0.117 4.117 14 C -0.190 4.190 15 C -0.180 4.180 16 N -0.168 5.168 17 N -0.165 5.165 18 C -0.056 4.056 19 C -0.153 4.153 20 C -0.162 4.162 21 C 0.053 3.947 22 N -0.318 5.318 23 C -0.374 4.374 24 H 0.101 0.899 25 C -0.245 4.245 26 N -0.584 5.584 27 Si 0.787 3.213 28 H -0.223 1.223 29 H -0.230 1.230 30 H -0.185 1.185 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.251 0.749 35 H 0.167 0.833 36 H 0.172 0.828 37 H 0.152 0.848 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.140 0.860 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.007 0.993 50 H 0.075 0.925 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.783 -11.839 17.858 21.606 hybrid contribution 0.114 0.093 -1.852 1.858 sum -2.669 -11.746 16.007 20.032 Atomic orbital electron populations 1.21701 0.94144 1.02079 1.00635 1.20836 0.94556 0.93244 0.86374 0.95701 1.21249 0.92873 0.83559 0.98282 0.90939 1.45816 1.61269 1.17969 1.09041 1.20389 0.78338 0.87401 0.83175 1.90721 1.51687 1.68270 1.35571 1.20329 1.07594 0.94744 0.87738 1.23718 0.85135 0.92341 0.96658 1.70196 1.30214 1.27034 1.01488 1.23633 0.91364 0.94622 0.94572 1.20244 1.01550 1.01741 0.88152 1.23078 0.98847 1.02607 0.94430 1.23084 1.01032 0.92097 1.01809 1.77809 1.14435 1.28009 0.96597 1.50325 1.17278 1.41145 1.07727 1.22328 0.80485 1.02325 1.00430 1.21702 0.95398 1.00395 0.97782 1.21937 0.99728 0.99298 0.95250 1.20583 0.83264 0.95664 0.95211 1.44364 1.02936 1.65287 1.19260 1.19491 0.95669 1.35972 0.86262 0.89924 1.25787 0.98894 1.00945 0.98899 1.70181 1.25946 1.45786 1.16451 0.85428 0.77703 0.79042 0.79131 1.22250 1.23028 1.18481 0.92196 0.93524 0.91834 0.74871 0.83255 0.82818 0.84847 0.89262 0.85604 0.85261 0.89510 0.90329 0.87529 0.86005 0.92119 0.92614 0.92092 0.91861 0.99256 0.92541 0.94580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 7.73 71.98 0.56 -3.64 16 2 C 0.16 5.71 3.20 44.96 0.14 5.85 16 3 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 4 C 0.15 4.67 2.32 45.07 0.10 4.78 16 5 H 0.07 2.42 7.58 -2.39 -0.02 2.40 16 6 N -0.69 -18.92 3.47 -442.18 -1.53 -20.45 16 7 C 0.52 14.28 7.79 87.66 0.68 14.96 16 8 O -0.58 -21.02 15.70 -3.01 -0.05 -21.06 16 9 C -0.06 -1.25 6.03 29.10 0.18 -1.08 16 10 C 0.30 8.04 6.48 138.22 0.90 8.93 16 11 N -0.56 -17.64 11.19 -179.72 -2.01 -19.65 16 12 C 0.24 7.03 7.69 138.63 1.07 8.10 16 13 C -0.10 -2.10 6.33 -11.54 -0.07 -2.17 16 14 C -0.15 -2.53 10.13 30.59 0.31 -2.22 16 15 C -0.14 -2.23 10.23 30.59 0.31 -1.92 16 16 N -0.34 -9.90 12.24 -51.34 -0.63 -10.52 16 17 N -0.37 -9.54 4.04 -359.87 -1.45 -10.99 16 18 C 0.08 1.33 11.33 127.77 1.45 2.78 16 19 C -0.11 -3.61 5.58 30.62 0.17 -3.43 16 20 C -0.12 -4.09 5.93 30.67 0.18 -3.91 16 21 C 0.18 7.72 5.28 86.36 0.46 8.17 16 22 N -0.59 -25.46 2.64 -675.08 -1.78 -27.25 16 23 C -0.24 -11.39 8.58 84.03 0.72 -10.67 16 24 H 0.08 3.62 6.23 -2.91 -0.02 3.60 16 25 C -0.05 -2.53 4.94 84.86 0.42 -2.11 16 26 N -0.94 -51.86 11.23 21.65 0.24 -51.62 16 27 Si 0.96 41.04 29.58 68.60 2.03 43.07 16 28 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 29 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 30 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.68 7.67 -2.39 -0.02 1.66 16 33 H 0.06 1.95 6.37 -2.39 -0.02 1.94 16 34 H 0.41 11.00 7.77 -92.71 -0.72 10.28 16 35 H 0.15 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.15 1.84 7.12 -2.39 -0.02 1.82 16 37 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.09 1.74 7.88 -2.39 -0.02 1.72 16 39 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.12 1.13 7.10 -2.38 -0.02 1.11 16 45 H 0.06 1.94 8.14 -2.38 -0.02 1.93 16 46 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.06 1.86 8.14 -2.38 -0.02 1.85 16 48 H 0.06 1.98 7.53 -2.39 -0.02 1.96 16 49 H -0.01 -0.52 8.14 -2.39 -0.02 -0.53 16 50 H 0.06 2.79 6.14 -2.39 -0.01 2.78 16 51 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -71.60 406.53 2.61 -68.99 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.22 Total: 27.07 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: 7.57 Total: 22.43 kcal Atomic # 7 Polarization: -133.33 SS G_CDS: -7.17 Total: -140.49 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -71.60 2.61 -68.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994497878.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.974 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds