Wall clock time and date at job start Wed Apr 1 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.69957 * 2 1 4 4 C 1.53188 * 109.58389 * 239.65046 * 2 1 3 5 5 H 1.08997 * 109.50566 * 65.59315 * 4 2 1 6 6 N 1.46503 * 109.50045 * 305.52409 * 4 2 1 7 7 C 1.34774 * 120.00108 * 155.27655 * 6 4 2 8 8 O 1.21275 * 120.00037 * 359.72881 * 7 6 4 9 9 C 1.50707 * 119.99842 * 179.72856 * 7 6 4 10 10 C 1.50704 * 109.46812 * 179.97438 * 9 7 6 11 11 N 1.30828 * 125.95694 * 90.02442 * 10 9 7 12 12 C 1.33240 * 109.82543 * 179.97438 * 11 10 9 13 13 C 1.50704 * 125.52592 * 179.97438 * 12 11 10 14 14 C 1.53009 * 117.49725 * 188.74813 * 13 12 11 15 15 C 1.52998 * 117.50017 * 120.09054 * 13 12 11 16 16 N 1.30718 * 108.94784 * 0.02562 * 12 11 10 17 17 N 1.34423 * 125.96306 * 269.71433 * 10 9 7 18 18 C 1.46506 * 126.81938 * 0.02562 * 17 10 9 19 19 C 1.53044 * 109.31113 * 185.57828 * 4 2 1 20 20 C 1.53042 * 109.54023 * 61.36410 * 19 4 2 21 21 C 1.53193 * 109.31026 * 298.63635 * 20 19 4 22 22 N 1.46924 * 109.58708 * 120.36050 * 2 1 3 23 23 C 1.36941 * 120.63066 * 353.36937 * 22 2 1 24 24 H 1.08004 * 119.99647 * 29.05182 * 23 22 2 25 25 C 1.38804 * 120.00002 * 209.04522 * 23 22 2 26 26 N 1.31625 * 120.00263 * 15.07379 * 25 23 22 27 27 Si 1.86804 * 119.99967 * 195.07112 * 25 23 22 28 28 H 1.48495 * 109.47092 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.46969 * 120.00452 * 27 25 23 30 30 H 1.48498 * 109.47158 * 239.99900 * 27 25 23 31 31 H 1.09004 * 109.46933 * 180.35141 * 1 2 3 32 32 H 1.08998 * 109.47032 * 300.35053 * 1 2 3 33 33 H 1.08996 * 109.47454 * 60.35342 * 1 2 3 34 34 H 0.96998 * 119.99586 * 335.00564 * 6 4 2 35 35 H 1.08989 * 109.46800 * 300.00037 * 9 7 6 36 36 H 1.08998 * 109.46624 * 60.00215 * 9 7 6 37 37 H 1.08998 * 115.55142 * 334.41097 * 13 12 11 38 38 H 1.08995 * 117.49672 * 359.97438 * 14 13 12 39 39 H 1.08999 * 117.49486 * 145.01658 * 14 13 12 40 40 H 1.09004 * 117.49861 * 214.97862 * 15 13 12 41 41 H 1.08999 * 117.50016 * 359.96781 * 15 13 12 42 42 H 1.08994 * 109.47379 * 90.00260 * 18 17 10 43 43 H 1.09006 * 109.46546 * 209.99815 * 18 17 10 44 44 H 1.08997 * 109.47085 * 329.99417 * 18 17 10 45 45 H 1.08997 * 109.45996 * 181.38714 * 19 4 2 46 46 H 1.09001 * 109.45663 * 301.34349 * 19 4 2 47 47 H 1.08999 * 109.49904 * 178.68685 * 20 19 4 48 48 H 1.08990 * 109.49823 * 58.58562 * 20 19 4 49 49 H 1.09002 * 109.58518 * 294.85113 * 21 20 19 50 50 H 1.08991 * 109.70554 * 174.49152 * 21 20 19 51 51 H 0.97003 * 120.00158 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7292 -1.2455 5 1 1.7655 -0.1670 -2.1369 6 7 1.4514 -2.0679 -1.3073 7 6 1.3335 -2.6985 -2.4925 8 8 1.7130 -2.1558 -3.5086 9 6 0.7300 -4.0780 -2.5553 10 6 0.7132 -4.5544 -3.9850 11 7 1.6651 -5.2237 -4.5829 12 6 1.3148 -5.4796 -5.8427 13 6 2.1497 -6.2295 -6.8487 14 6 1.6640 -6.2436 -8.2996 15 6 1.5584 -7.5087 -7.4442 16 7 0.1301 -4.9739 -6.0650 17 7 -0.2848 -4.3707 -4.8666 18 6 -1.5521 -3.6760 -4.6260 19 6 3.5675 -0.8479 -1.1702 20 6 3.9570 -1.6657 0.0633 21 6 3.4651 -0.9470 1.3236 22 7 2.0226 -0.6996 1.1944 23 6 1.1538 -1.1128 2.1689 24 1 0.1360 -1.3675 1.9124 25 6 1.5812 -1.2044 3.4864 26 7 2.7039 -0.6252 3.8559 27 14 0.5629 -2.1497 4.7350 28 1 -0.6449 -2.7030 4.0717 29 1 1.3731 -3.2615 5.2945 30 1 0.1517 -1.2365 5.8315 31 1 -0.3633 -1.0277 0.0063 32 1 -0.3633 0.5193 0.8868 33 1 -0.3634 0.5083 -0.8931 34 1 1.1479 -2.5019 -0.4947 35 1 1.3249 -4.7626 -1.9508 36 1 -0.2896 -4.0463 -2.1712 37 1 3.2260 -6.2042 -6.6785 38 1 0.7404 -5.7110 -8.5263 39 1 2.4208 -6.2281 -9.0838 40 1 2.2457 -8.3251 -7.6662 41 1 0.5657 -7.8083 -7.1081 42 1 -1.4384 -2.6191 -4.8665 43 1 -2.3294 -4.1102 -5.2548 44 1 -1.8313 -3.7822 -3.5777 45 1 3.9378 -1.3446 -2.0670 46 1 4.0061 0.1475 -1.0993 47 1 5.0413 -1.7696 0.1035 48 1 3.4984 -2.6527 0.0050 49 1 3.9903 0.0020 1.4316 50 1 3.6521 -1.5697 2.1984 51 1 3.0024 -0.6889 4.7766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994497884.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:04 Heat of formation + Delta-G solvation = 98.927751 kcal Electronic energy + Delta-G solvation = -31508.015456 eV Core-core repulsion = 27445.751256 eV Total energy + Delta-G solvation = -4062.264200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.24318 -39.79476 -37.76132 -37.32818 -34.02142 -33.98698 -32.82078 -32.33995 -31.71234 -29.76996 -28.64991 -27.37463 -26.22552 -25.06705 -23.87433 -22.64439 -22.41489 -21.30909 -20.79641 -20.21645 -19.76108 -18.79232 -17.31263 -17.14799 -16.49114 -15.89567 -15.66837 -15.38911 -15.25446 -15.09212 -14.71695 -14.04384 -13.94545 -13.79650 -13.64686 -13.39535 -13.37422 -13.15762 -12.98289 -12.64104 -12.33856 -12.24415 -11.89731 -11.83692 -11.65449 -11.33765 -11.28834 -11.06988 -11.03897 -10.76505 -10.73755 -10.69283 -10.56423 -10.15889 -10.05397 -9.99523 -9.88433 -9.71671 -9.59479 -9.35660 -9.22941 -8.63655 -8.52151 -6.74475 -5.87160 -3.33028 1.48034 2.17656 2.66716 2.79146 3.29286 3.36486 3.39062 3.45304 3.70209 3.84874 4.24220 4.34931 4.38823 4.63921 4.72153 4.78043 4.90843 4.97179 5.01331 5.17800 5.24787 5.26831 5.28728 5.39679 5.44712 5.52948 5.56412 5.58436 5.70565 5.87619 5.91783 5.93157 6.05180 6.15429 6.23869 6.26600 6.34543 6.38003 6.49545 6.61625 6.64218 6.69066 6.73886 6.87691 6.89675 7.01880 7.34267 7.62922 7.71527 7.87021 8.08795 8.35538 8.47335 9.11613 9.74753 10.31709 11.20511 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.002522 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.759755 B =11099.105765 C =11372.742545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.040 0.960 4 C 0.136 3.864 5 H 0.075 0.925 6 N -0.696 5.696 7 C 0.515 3.485 8 O -0.543 6.543 9 C -0.070 4.070 10 C 0.310 3.690 11 N -0.527 5.527 12 C 0.254 3.746 13 C -0.068 4.068 14 C -0.161 4.161 15 C -0.160 4.160 16 N -0.318 5.318 17 N -0.373 5.373 18 C 0.096 3.904 19 C -0.122 4.122 20 C -0.139 4.139 21 C 0.170 3.830 22 N -0.586 5.586 23 C -0.256 4.256 24 H 0.071 0.929 25 C 0.005 3.995 26 N -0.899 5.899 27 Si 0.900 3.100 28 H -0.278 1.278 29 H -0.289 1.289 30 H -0.291 1.291 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.410 0.590 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.047 0.953 48 H 0.053 0.947 49 H 0.017 0.983 50 H 0.088 0.912 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.614 -8.589 -16.151 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.051 3.949 3 H 0.057 0.943 4 C 0.030 3.970 5 H 0.093 0.907 6 N -0.347 5.347 7 C 0.299 3.701 8 O -0.420 6.420 9 C -0.112 4.112 10 C 0.033 3.967 11 N -0.254 5.254 12 C -0.028 4.028 13 C -0.089 4.089 14 C -0.199 4.199 15 C -0.198 4.198 16 N -0.147 5.147 17 N -0.163 5.163 18 C -0.047 4.047 19 C -0.160 4.160 20 C -0.179 4.179 21 C 0.045 3.955 22 N -0.310 5.310 23 C -0.386 4.386 24 H 0.089 0.911 25 C -0.194 4.194 26 N -0.543 5.543 27 Si 0.730 3.270 28 H -0.203 1.203 29 H -0.216 1.216 30 H -0.218 1.218 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.247 0.753 35 H 0.149 0.851 36 H 0.132 0.868 37 H 0.148 0.852 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.035 0.965 50 H 0.106 0.894 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.460 -8.253 -17.180 19.826 hybrid contribution -0.646 -0.361 1.478 1.653 sum -6.107 -8.614 -15.702 18.922 Atomic orbital electron populations 1.21778 0.95655 1.01371 1.00432 1.20722 0.93316 0.93959 0.86853 0.94295 1.21552 0.93011 0.82669 0.99756 0.90695 1.45934 1.61464 1.18659 1.08680 1.19958 0.79555 0.86337 0.84289 1.90726 1.49789 1.67104 1.34429 1.20229 1.04938 0.97041 0.89014 1.23307 0.84851 0.94622 0.93946 1.70226 1.27868 1.20596 1.06718 1.23009 0.90971 0.97228 0.91545 1.20038 0.97874 0.99742 0.91261 1.23036 1.03736 1.00952 0.92194 1.23029 1.02626 0.91197 1.02968 1.77881 1.15567 1.18087 1.03157 1.50044 1.15922 1.42412 1.07919 1.21962 0.82028 0.97469 1.03220 1.21773 0.95377 1.00503 0.98377 1.22130 0.99036 0.99523 0.97164 1.20827 0.83045 0.97240 0.94429 1.44184 1.03174 1.64845 1.18795 1.19174 0.94797 1.38298 0.86293 0.91119 1.25109 0.97704 0.99542 0.97026 1.70027 1.23223 1.44176 1.16843 0.86275 0.79587 0.79520 0.81618 1.20277 1.21618 1.21814 0.92796 0.91767 0.94275 0.75331 0.85072 0.86754 0.85180 0.87915 0.87919 0.87817 0.88650 0.89958 0.88977 0.89003 0.93073 0.91955 0.93424 0.92792 0.96471 0.89355 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 7.72 37.16 0.29 -1.94 16 2 C 0.16 2.94 3.20 -67.60 -0.22 2.72 16 3 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.14 2.28 2.33 -67.81 -0.16 2.12 16 5 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 6 N -0.70 -10.44 3.47 -53.69 -0.19 -10.63 16 7 C 0.52 7.69 7.79 -10.98 -0.09 7.61 16 8 O -0.54 -10.21 15.70 5.56 0.09 -10.12 16 9 C -0.07 -0.81 6.03 -29.03 -0.18 -0.98 16 10 C 0.31 4.44 6.48 -155.70 -1.01 3.43 16 11 N -0.53 -8.56 11.19 -8.16 -0.09 -8.65 16 12 C 0.25 3.80 7.69 -156.85 -1.21 2.59 16 13 C -0.07 -0.78 6.33 -91.77 -0.58 -1.36 16 14 C -0.16 -1.46 10.14 -26.69 -0.27 -1.73 16 15 C -0.16 -1.40 10.24 -26.69 -0.27 -1.67 16 16 N -0.32 -4.71 12.24 32.42 0.40 -4.31 16 17 N -0.37 -4.97 4.04 -65.10 -0.26 -5.24 16 18 C 0.10 0.82 11.33 59.85 0.68 1.50 16 19 C -0.12 -2.11 5.57 -26.69 -0.15 -2.26 16 20 C -0.14 -2.56 5.93 -26.61 -0.16 -2.71 16 21 C 0.17 3.74 5.29 -3.71 -0.02 3.72 16 22 N -0.59 -12.76 2.65 -164.78 -0.44 -13.20 16 23 C -0.26 -6.09 8.61 -15.06 -0.13 -6.22 16 24 H 0.07 1.61 6.20 -52.48 -0.33 1.28 16 25 C 0.01 0.14 4.96 -17.43 -0.09 0.05 16 26 N -0.90 -24.41 11.14 55.49 0.62 -23.79 16 27 Si 0.90 20.04 29.58 -169.99 -5.03 15.01 16 28 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 29 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 30 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 31 H 0.05 0.85 6.38 -51.93 -0.33 0.52 16 32 H 0.06 1.16 7.66 -51.93 -0.40 0.76 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.41 6.10 7.77 -40.82 -0.32 5.78 16 35 H 0.13 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.11 0.90 7.12 -51.93 -0.37 0.53 16 37 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.10 1.03 7.88 -51.93 -0.41 0.62 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.55 7.10 -51.93 -0.37 0.18 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.05 0.99 7.53 -51.93 -0.39 0.60 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 2.20 6.06 -51.93 -0.31 1.88 16 51 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 406.35 15.07 6.12 6.12 Total: -1.00 -32.46 406.35 -10.58 -43.03 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.25 Total: 6.88 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -3.55 Total: 4.88 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: 0.04 Total: -65.81 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.46 -10.58 -43.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994497884.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.962 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds