Wall clock time and date at job start Wed Apr 1 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.69957 * 2 1 4 4 C 1.53188 * 109.58389 * 239.65046 * 2 1 3 5 5 H 1.08997 * 109.50566 * 65.59315 * 4 2 1 6 6 N 1.46503 * 109.50045 * 305.52409 * 4 2 1 7 7 C 1.34774 * 120.00108 * 155.27655 * 6 4 2 8 8 O 1.21275 * 120.00037 * 359.72881 * 7 6 4 9 9 C 1.50707 * 119.99842 * 179.72856 * 7 6 4 10 10 C 1.50704 * 109.46812 * 179.97438 * 9 7 6 11 11 N 1.30828 * 125.95694 * 90.02442 * 10 9 7 12 12 C 1.33240 * 109.82543 * 179.97438 * 11 10 9 13 13 C 1.50704 * 125.52592 * 179.97438 * 12 11 10 14 14 C 1.53009 * 117.49725 * 188.74813 * 13 12 11 15 15 C 1.52998 * 117.50017 * 120.09054 * 13 12 11 16 16 N 1.30718 * 108.94784 * 0.02562 * 12 11 10 17 17 N 1.34423 * 125.96306 * 269.71433 * 10 9 7 18 18 C 1.46506 * 126.81938 * 0.02562 * 17 10 9 19 19 C 1.53044 * 109.31113 * 185.57828 * 4 2 1 20 20 C 1.53042 * 109.54023 * 61.36410 * 19 4 2 21 21 C 1.53193 * 109.31026 * 298.63635 * 20 19 4 22 22 N 1.46924 * 109.58708 * 120.36050 * 2 1 3 23 23 C 1.36941 * 120.63066 * 353.36937 * 22 2 1 24 24 H 1.08004 * 119.99647 * 29.05182 * 23 22 2 25 25 C 1.38804 * 120.00002 * 209.04522 * 23 22 2 26 26 N 1.31625 * 120.00263 * 15.07379 * 25 23 22 27 27 Si 1.86804 * 119.99967 * 195.07112 * 25 23 22 28 28 H 1.48495 * 109.47092 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.46969 * 120.00452 * 27 25 23 30 30 H 1.48498 * 109.47158 * 239.99900 * 27 25 23 31 31 H 1.09004 * 109.46933 * 180.35141 * 1 2 3 32 32 H 1.08998 * 109.47032 * 300.35053 * 1 2 3 33 33 H 1.08996 * 109.47454 * 60.35342 * 1 2 3 34 34 H 0.96998 * 119.99586 * 335.00564 * 6 4 2 35 35 H 1.08989 * 109.46800 * 300.00037 * 9 7 6 36 36 H 1.08998 * 109.46624 * 60.00215 * 9 7 6 37 37 H 1.08998 * 115.55142 * 334.41097 * 13 12 11 38 38 H 1.08995 * 117.49672 * 359.97438 * 14 13 12 39 39 H 1.08999 * 117.49486 * 145.01658 * 14 13 12 40 40 H 1.09004 * 117.49861 * 214.97862 * 15 13 12 41 41 H 1.08999 * 117.50016 * 359.96781 * 15 13 12 42 42 H 1.08994 * 109.47379 * 90.00260 * 18 17 10 43 43 H 1.09006 * 109.46546 * 209.99815 * 18 17 10 44 44 H 1.08997 * 109.47085 * 329.99417 * 18 17 10 45 45 H 1.08997 * 109.45996 * 181.38714 * 19 4 2 46 46 H 1.09001 * 109.45663 * 301.34349 * 19 4 2 47 47 H 1.08999 * 109.49904 * 178.68685 * 20 19 4 48 48 H 1.08990 * 109.49823 * 58.58562 * 20 19 4 49 49 H 1.09002 * 109.58518 * 294.85113 * 21 20 19 50 50 H 1.08991 * 109.70554 * 174.49152 * 21 20 19 51 51 H 0.97003 * 120.00158 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7292 -1.2455 5 1 1.7655 -0.1670 -2.1369 6 7 1.4514 -2.0679 -1.3073 7 6 1.3335 -2.6985 -2.4925 8 8 1.7130 -2.1558 -3.5086 9 6 0.7300 -4.0780 -2.5553 10 6 0.7132 -4.5544 -3.9850 11 7 1.6651 -5.2237 -4.5829 12 6 1.3148 -5.4796 -5.8427 13 6 2.1497 -6.2295 -6.8487 14 6 1.6640 -6.2436 -8.2996 15 6 1.5584 -7.5087 -7.4442 16 7 0.1301 -4.9739 -6.0650 17 7 -0.2848 -4.3707 -4.8666 18 6 -1.5521 -3.6760 -4.6260 19 6 3.5675 -0.8479 -1.1702 20 6 3.9570 -1.6657 0.0633 21 6 3.4651 -0.9470 1.3236 22 7 2.0226 -0.6996 1.1944 23 6 1.1538 -1.1128 2.1689 24 1 0.1360 -1.3675 1.9124 25 6 1.5812 -1.2044 3.4864 26 7 2.7039 -0.6252 3.8559 27 14 0.5629 -2.1497 4.7350 28 1 -0.6449 -2.7030 4.0717 29 1 1.3731 -3.2615 5.2945 30 1 0.1517 -1.2365 5.8315 31 1 -0.3633 -1.0277 0.0063 32 1 -0.3633 0.5193 0.8868 33 1 -0.3634 0.5083 -0.8931 34 1 1.1479 -2.5019 -0.4947 35 1 1.3249 -4.7626 -1.9508 36 1 -0.2896 -4.0463 -2.1712 37 1 3.2260 -6.2042 -6.6785 38 1 0.7404 -5.7110 -8.5263 39 1 2.4208 -6.2281 -9.0838 40 1 2.2457 -8.3251 -7.6662 41 1 0.5657 -7.8083 -7.1081 42 1 -1.4384 -2.6191 -4.8665 43 1 -2.3294 -4.1102 -5.2548 44 1 -1.8313 -3.7822 -3.5777 45 1 3.9378 -1.3446 -2.0670 46 1 4.0061 0.1475 -1.0993 47 1 5.0413 -1.7696 0.1035 48 1 3.4984 -2.6527 0.0050 49 1 3.9903 0.0020 1.4316 50 1 3.6521 -1.5697 2.1984 51 1 3.0024 -0.6889 4.7766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994497884.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:03 Heat of formation + Delta-G solvation = 80.125410 kcal Electronic energy + Delta-G solvation = -31508.830787 eV Core-core repulsion = 27445.751256 eV Total energy + Delta-G solvation = -4063.079530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.23835 -41.11325 -39.18448 -38.14551 -35.59512 -34.88988 -34.11681 -33.66657 -33.24569 -31.27068 -29.76802 -28.25001 -27.69775 -26.78591 -24.73987 -23.95927 -23.29816 -22.62518 -22.28559 -21.26137 -20.77210 -20.28440 -18.44285 -18.26182 -17.99778 -17.08587 -16.86132 -16.63141 -16.43220 -16.29655 -15.69762 -15.65570 -15.30380 -15.02801 -14.79323 -14.70675 -14.37810 -14.30532 -14.19421 -14.15318 -13.52388 -13.19794 -13.10822 -12.91579 -12.85262 -12.71481 -12.66102 -12.39705 -12.39247 -12.26658 -12.13737 -11.86572 -11.85456 -11.64692 -11.47184 -11.34681 -11.08888 -11.02719 -10.99520 -10.69440 -10.46699 -10.16597 -9.92233 -8.58202 -7.77106 -5.23880 0.47382 1.32273 1.52801 1.56529 1.63266 1.64269 1.66473 2.34181 2.57945 2.83129 2.99764 3.38114 3.39948 3.50361 3.62425 3.85086 3.88774 4.00169 4.06688 4.08011 4.11218 4.22769 4.24391 4.29850 4.41895 4.44560 4.59007 4.61785 4.63710 4.70210 4.74413 4.80343 4.90317 4.99240 5.01669 5.05563 5.11692 5.16228 5.23248 5.26383 5.30077 5.38169 5.39023 5.51954 5.58794 5.65890 5.79081 5.79464 5.84464 6.48410 6.66108 7.06898 7.23019 7.28927 7.93694 8.47142 9.29763 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.002522 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.759755 B =11099.105765 C =11372.742545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.026 0.974 4 C 0.148 3.852 5 H 0.078 0.922 6 N -0.690 5.690 7 C 0.521 3.479 8 O -0.582 6.582 9 C -0.062 4.062 10 C 0.298 3.702 11 N -0.564 5.564 12 C 0.239 3.761 13 C -0.097 4.097 14 C -0.151 4.151 15 C -0.142 4.142 16 N -0.339 5.339 17 N -0.374 5.374 18 C 0.084 3.916 19 C -0.117 4.117 20 C -0.125 4.125 21 C 0.179 3.821 22 N -0.595 5.595 23 C -0.241 4.241 24 H 0.088 0.912 25 C -0.054 4.054 26 N -0.939 5.939 27 Si 0.959 3.041 28 H -0.256 1.256 29 H -0.299 1.299 30 H -0.305 1.305 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.414 0.586 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.132 0.868 38 H 0.090 0.910 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.124 0.876 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.058 0.942 49 H -0.010 1.010 50 H 0.058 0.942 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.531 -10.010 -17.446 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.044 0.956 4 C 0.041 3.959 5 H 0.096 0.904 6 N -0.341 5.341 7 C 0.307 3.693 8 O -0.462 6.462 9 C -0.104 4.104 10 C 0.021 3.979 11 N -0.292 5.292 12 C -0.042 4.042 13 C -0.118 4.118 14 C -0.189 4.189 15 C -0.180 4.180 16 N -0.168 5.168 17 N -0.164 5.164 18 C -0.056 4.056 19 C -0.155 4.155 20 C -0.164 4.164 21 C 0.053 3.947 22 N -0.319 5.319 23 C -0.371 4.371 24 H 0.106 0.894 25 C -0.249 4.249 26 N -0.586 5.586 27 Si 0.788 3.212 28 H -0.179 1.179 29 H -0.227 1.227 30 H -0.233 1.233 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.251 0.749 35 H 0.163 0.837 36 H 0.176 0.824 37 H 0.150 0.850 38 H 0.108 0.892 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.142 0.858 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.008 0.992 50 H 0.076 0.924 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.431 -9.681 -18.498 22.161 hybrid contribution -0.063 0.159 1.808 1.816 sum -7.494 -9.522 -16.690 20.625 Atomic orbital electron populations 1.21704 0.93668 1.02241 1.00838 1.20844 0.94931 0.93162 0.86080 0.95642 1.21260 0.92435 0.83586 0.98576 0.90448 1.45821 1.61273 1.17953 1.09052 1.20396 0.78543 0.87124 0.83250 1.90721 1.51455 1.68362 1.35708 1.20329 1.07480 0.94611 0.87962 1.23706 0.84860 0.94429 0.94885 1.70198 1.29325 1.22007 1.07638 1.23618 0.91365 0.97365 0.91863 1.20242 0.97770 1.01740 0.92030 1.23091 1.03598 1.00710 0.91482 1.23096 1.02470 0.91130 1.01333 1.77802 1.15885 1.18776 1.04319 1.50335 1.16889 1.41956 1.07221 1.22355 0.80623 0.96992 1.05653 1.21719 0.96052 1.00272 0.97488 1.21936 0.99566 0.99225 0.95640 1.20581 0.83479 0.95656 0.95008 1.44368 1.02834 1.65327 1.19379 1.19583 0.95355 1.35833 0.86288 0.89439 1.25805 0.98858 1.01201 0.99002 1.70192 1.25284 1.46621 1.16506 0.85330 0.78867 0.77700 0.79264 1.17930 1.22695 1.23307 0.91583 0.93519 0.91779 0.74875 0.83667 0.82412 0.85003 0.89174 0.85628 0.85321 0.89447 0.90180 0.87571 0.85814 0.93181 0.91950 0.92501 0.92351 0.99193 0.92404 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 7.72 71.98 0.56 -3.29 16 2 C 0.16 5.56 3.20 44.98 0.14 5.71 16 3 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 4 C 0.15 4.69 2.33 45.07 0.10 4.79 16 5 H 0.08 2.49 7.58 -2.39 -0.02 2.47 16 6 N -0.69 -18.85 3.47 -442.16 -1.53 -20.38 16 7 C 0.52 14.25 7.79 87.66 0.68 14.93 16 8 O -0.58 -20.99 15.70 -3.01 -0.05 -21.04 16 9 C -0.06 -1.24 6.03 29.11 0.18 -1.07 16 10 C 0.30 8.03 6.48 138.23 0.90 8.92 16 11 N -0.56 -17.97 11.19 -179.72 -2.01 -19.98 16 12 C 0.24 7.08 7.69 138.63 1.07 8.15 16 13 C -0.10 -2.16 6.33 -11.54 -0.07 -2.23 16 14 C -0.15 -2.55 10.14 30.62 0.31 -2.24 16 15 C -0.14 -2.27 10.24 30.62 0.31 -1.95 16 16 N -0.34 -9.82 12.24 -51.33 -0.63 -10.45 16 17 N -0.37 -9.35 4.04 -359.86 -1.45 -10.81 16 18 C 0.08 1.23 11.33 127.77 1.45 2.68 16 19 C -0.12 -3.91 5.57 30.62 0.17 -3.74 16 20 C -0.12 -4.48 5.93 30.67 0.18 -4.30 16 21 C 0.18 7.96 5.29 86.36 0.46 8.42 16 22 N -0.60 -25.54 2.65 -675.23 -1.79 -27.33 16 23 C -0.24 -11.14 8.61 84.03 0.72 -10.42 16 24 H 0.09 3.73 6.20 -2.91 -0.02 3.71 16 25 C -0.05 -2.72 4.96 84.86 0.42 -2.30 16 26 N -0.94 -52.38 11.14 21.65 0.24 -52.14 16 27 Si 0.96 41.06 29.58 68.60 2.03 43.09 16 28 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 29 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 30 H -0.31 -13.65 7.11 99.48 0.71 -12.95 16 31 H 0.07 1.83 6.38 -2.38 -0.02 1.82 16 32 H 0.05 1.58 7.66 -2.39 -0.02 1.56 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.41 10.95 7.77 -92.71 -0.72 10.23 16 35 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.16 1.72 7.12 -2.39 -0.02 1.70 16 37 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.09 1.76 7.88 -2.39 -0.02 1.74 16 39 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.12 0.96 7.10 -2.39 -0.02 0.94 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.06 2.05 7.53 -2.39 -0.02 2.03 16 49 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 50 H 0.06 2.96 6.06 -2.39 -0.01 2.94 16 51 H 0.24 13.47 8.31 -92.71 -0.77 12.70 16 Total: -1.00 -72.55 406.35 2.61 -69.94 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.22 Total: 27.04 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 7.58 Total: 22.06 kcal Atomic # 7 Polarization: -133.92 SS G_CDS: -7.17 Total: -141.09 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -72.55 2.61 -69.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994497884.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.068 kcal (2) G-P(sol) polarization free energy of solvation -72.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds