Wall clock time and date at job start Wed Apr 1 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.58481 * 2 1 4 4 C 1.53190 * 109.59035 * 120.28978 * 2 1 3 5 5 H 1.08997 * 109.49810 * 54.46153 * 4 2 1 6 6 N 1.46507 * 109.52112 * 294.38642 * 4 2 1 7 7 C 1.34771 * 119.99807 * 155.14316 * 6 4 2 8 8 O 1.21279 * 120.00379 * 0.02562 * 7 6 4 9 9 C 1.50703 * 119.99698 * 180.02562 * 7 6 4 10 10 C 1.50709 * 109.47059 * 180.02562 * 9 7 6 11 11 N 1.30826 * 125.95846 * 269.68811 * 10 9 7 12 12 C 1.33246 * 109.82641 * 179.86409 * 11 10 9 13 13 C 1.50700 * 125.52567 * 180.12726 * 12 11 10 14 14 C 1.53000 * 117.49863 * 189.04234 * 13 12 11 15 15 C 1.52998 * 117.49707 * 120.38559 * 13 12 11 16 16 N 1.30705 * 108.94531 * 0.40410 * 12 11 10 17 17 N 1.34421 * 125.95903 * 89.99798 * 10 9 7 18 18 C 1.46498 * 126.82872 * 0.02562 * 17 10 9 19 19 C 1.53035 * 109.31532 * 174.42047 * 4 2 1 20 20 C 1.53044 * 109.53393 * 298.63210 * 19 4 2 21 21 C 1.53190 * 109.31149 * 61.36742 * 20 19 4 22 22 N 1.46919 * 108.77505 * 305.35793 * 21 20 19 23 23 C 1.36939 * 120.63309 * 233.58743 * 22 21 20 24 24 H 1.08003 * 119.99599 * 150.87375 * 23 22 21 25 25 C 1.38808 * 119.99870 * 330.87572 * 23 22 21 26 26 N 1.31620 * 120.00387 * 343.81088 * 25 23 22 27 27 Si 1.86806 * 119.99932 * 163.81229 * 25 23 22 28 28 H 1.48498 * 109.46789 * 94.30616 * 27 25 23 29 29 H 1.48496 * 109.47199 * 214.30833 * 27 25 23 30 30 H 1.48504 * 109.47083 * 334.31121 * 27 25 23 31 31 H 1.09003 * 109.46439 * 299.71395 * 1 2 3 32 32 H 1.08994 * 109.47332 * 59.70859 * 1 2 3 33 33 H 1.08991 * 109.47360 * 179.71822 * 1 2 3 34 34 H 0.97002 * 119.99901 * 335.14925 * 6 4 2 35 35 H 1.09002 * 109.47063 * 300.00144 * 9 7 6 36 36 H 1.08995 * 109.47098 * 60.00374 * 9 7 6 37 37 H 1.09004 * 115.55134 * 334.71577 * 13 12 11 38 38 H 1.08995 * 117.49807 * 0.02562 * 14 13 12 39 39 H 1.09005 * 117.49422 * 145.02155 * 14 13 12 40 40 H 1.09008 * 117.50215 * 214.97838 * 15 13 12 41 41 H 1.09002 * 117.49980 * 359.97107 * 15 13 12 42 42 H 1.09007 * 109.46794 * 89.99688 * 18 17 10 43 43 H 1.08999 * 109.47768 * 209.99858 * 18 17 10 44 44 H 1.08997 * 109.47004 * 330.00559 * 18 17 10 45 45 H 1.09002 * 109.46117 * 178.61017 * 19 4 2 46 46 H 1.09000 * 109.46151 * 58.65381 * 19 4 2 47 47 H 1.09001 * 109.49155 * 181.31703 * 20 19 4 48 48 H 1.08997 * 109.49729 * 301.41173 * 20 19 4 49 49 H 1.09002 * 109.59014 * 65.15294 * 21 20 19 50 50 H 1.09004 * 109.57960 * 185.57447 * 21 20 19 51 51 H 0.96994 * 119.99870 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0437 -0.7279 1.2462 5 1 1.6030 -1.7237 1.2934 6 7 1.6707 0.0290 2.4439 7 6 1.5505 -0.6013 3.6290 8 8 1.7515 -1.7949 3.7043 9 6 1.1663 0.1772 4.8609 10 6 1.1016 -0.7541 6.0439 11 7 0.0443 -1.4099 6.4485 12 6 0.3483 -2.1400 7.5209 13 6 -0.6058 -3.0330 8.2713 14 6 -0.1251 -3.6236 9.5984 15 6 -0.2567 -4.5197 8.3645 16 7 1.6066 -1.9513 7.8200 17 7 2.1187 -1.0515 6.8709 18 6 3.4889 -0.5382 6.7977 19 6 3.5676 -0.8466 1.1710 20 6 3.9568 -1.6659 -0.0617 21 6 3.4649 -0.9486 -1.3227 22 7 2.0225 -0.7011 -1.1937 23 6 1.1536 -1.1153 -2.1677 24 1 0.1363 -1.3713 -1.9105 25 6 1.5803 -1.2063 -3.4854 26 7 2.6906 -0.6072 -3.8606 27 14 0.5787 -2.1790 -4.7265 28 1 -0.3435 -1.2633 -5.4449 29 1 1.4925 -2.8265 -5.7016 30 1 -0.2093 -3.2204 -4.0194 31 1 -0.3632 0.5094 0.8926 32 1 -0.3634 0.5183 -0.8873 33 1 -0.3633 -1.0275 -0.0051 34 1 1.5102 0.9838 2.3837 35 1 1.9106 0.9512 5.0484 36 1 0.1912 0.6401 4.7087 37 1 -1.6600 -2.7677 8.1910 38 1 0.8811 -3.3658 9.9288 39 1 -0.8631 -3.7470 10.3910 40 1 -1.0812 -5.2326 8.3458 41 1 0.6628 -4.8520 7.8825 42 1 3.5661 0.3766 7.3855 43 1 4.1780 -1.2839 7.1939 44 1 3.7419 -0.3250 5.7592 45 1 3.9379 -1.3424 2.0684 46 1 4.0062 0.1486 1.0990 47 1 5.0411 -1.7698 -0.1017 48 1 3.4982 -2.6529 -0.0022 49 1 3.9902 0.0003 -1.4319 50 1 3.6517 -1.5745 -2.1954 51 1 2.9885 -0.6705 -4.7814 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994497890.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:07 Heat of formation + Delta-G solvation = 97.997182 kcal Electronic energy + Delta-G solvation = -31012.429416 eV Core-core repulsion = 26950.124863 eV Total energy + Delta-G solvation = -4062.304552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.32666 -39.82343 -37.77914 -37.36801 -34.39000 -34.07115 -32.93680 -32.48358 -31.68304 -29.75522 -28.63557 -27.44734 -26.14850 -25.02399 -23.93605 -22.68690 -22.51066 -21.07162 -20.74454 -20.26307 -19.96513 -19.31860 -17.31688 -17.23872 -16.48041 -15.95704 -15.85311 -15.57335 -15.28989 -15.06537 -14.74885 -14.03527 -13.94006 -13.78971 -13.75279 -13.55255 -13.41981 -13.32769 -12.92457 -12.63117 -12.44452 -12.30695 -11.89385 -11.76709 -11.67776 -11.57231 -11.14547 -11.10966 -10.96022 -10.76155 -10.75618 -10.60981 -10.35353 -10.20451 -10.07288 -10.07134 -10.04226 -9.82572 -9.65740 -9.43634 -9.28460 -8.76992 -8.48441 -6.71187 -5.82787 -3.26493 1.38835 2.10292 2.58151 2.62806 3.24577 3.35663 3.43554 3.46616 3.63721 3.77560 4.15493 4.25763 4.46594 4.61954 4.67797 4.73587 4.76427 4.83023 4.91546 5.03579 5.13035 5.25250 5.34477 5.36685 5.40135 5.47179 5.54970 5.57316 5.72360 5.87412 5.89641 5.90557 6.02662 6.16246 6.16601 6.28746 6.30392 6.37022 6.47108 6.55363 6.60422 6.65080 6.69665 6.78936 6.95282 7.02962 7.35280 7.59969 7.62732 7.79470 8.00471 8.27233 8.41597 9.16881 9.79692 10.35473 11.26029 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017817 B = 0.002267 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.136526 B =12347.013064 C =12985.470507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.028 0.972 4 C 0.131 3.869 5 H 0.086 0.914 6 N -0.714 5.714 7 C 0.515 3.485 8 O -0.529 6.529 9 C -0.069 4.069 10 C 0.306 3.694 11 N -0.526 5.526 12 C 0.255 3.745 13 C -0.070 4.070 14 C -0.161 4.161 15 C -0.158 4.158 16 N -0.317 5.317 17 N -0.373 5.373 18 C 0.096 3.904 19 C -0.115 4.115 20 C -0.141 4.141 21 C 0.170 3.830 22 N -0.582 5.582 23 C -0.252 4.252 24 H 0.071 0.929 25 C 0.004 3.996 26 N -0.902 5.902 27 Si 0.901 3.099 28 H -0.287 1.287 29 H -0.290 1.290 30 H -0.278 1.278 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.398 0.602 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.019 0.981 50 H 0.088 0.912 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 3.218 23.029 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.026 3.974 5 H 0.104 0.896 6 N -0.365 5.365 7 C 0.298 3.702 8 O -0.405 6.405 9 C -0.111 4.111 10 C 0.029 3.971 11 N -0.253 5.253 12 C -0.026 4.026 13 C -0.091 4.091 14 C -0.199 4.199 15 C -0.197 4.197 16 N -0.145 5.145 17 N -0.163 5.163 18 C -0.046 4.046 19 C -0.154 4.154 20 C -0.180 4.180 21 C 0.044 3.956 22 N -0.305 5.305 23 C -0.382 4.382 24 H 0.088 0.912 25 C -0.195 4.195 26 N -0.546 5.546 27 Si 0.730 3.270 28 H -0.214 1.214 29 H -0.216 1.216 30 H -0.204 1.204 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.232 0.768 35 H 0.133 0.867 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.037 0.963 50 H 0.106 0.894 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.170 2.077 23.321 23.414 hybrid contribution -0.192 0.252 -0.985 1.035 sum -0.362 2.330 22.335 22.460 Atomic orbital electron populations 1.21825 0.95566 1.01812 1.00274 1.20559 0.93328 0.93506 0.86597 0.95447 1.21834 0.95068 0.96931 0.83598 0.89558 1.46074 1.70007 1.12309 1.08124 1.20002 0.77917 0.88029 0.84217 1.90776 1.49483 1.14772 1.85465 1.20237 1.06827 0.95933 0.88126 1.23283 0.83892 0.96488 0.93451 1.70220 1.28188 1.13147 1.13788 1.23027 0.90361 0.96586 0.92624 1.20044 0.96935 0.93044 0.99069 1.23036 1.03400 1.02785 0.90715 1.23046 1.03822 0.91488 1.01349 1.77899 1.11545 1.11546 1.13517 1.50044 1.10712 1.33972 1.21579 1.21951 0.78461 1.00229 1.03986 1.21751 0.95360 1.00005 0.98301 1.22188 0.99226 0.99746 0.96889 1.20833 0.83118 0.97200 0.94443 1.44039 1.03143 1.64990 1.18305 1.19160 0.94903 1.37969 0.86133 0.91172 1.25067 0.97902 0.99548 0.96934 1.70028 1.24112 1.43681 1.16769 0.86310 0.79375 0.80060 0.81220 1.21441 1.21572 1.20352 0.94214 0.91736 0.92630 0.76833 0.86690 0.85013 0.85164 0.87948 0.87928 0.87713 0.88493 0.90109 0.88821 0.89089 0.93404 0.92712 0.93003 0.92522 0.96250 0.89403 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.84 37.16 0.29 -2.16 16 2 C 0.17 3.21 3.03 -67.59 -0.21 3.01 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 4 C 0.13 2.23 1.99 -67.81 -0.14 2.10 16 5 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 6 N -0.71 -9.12 4.58 -53.69 -0.25 -9.36 16 7 C 0.52 6.95 7.79 -10.99 -0.09 6.87 16 8 O -0.53 -9.81 15.70 5.56 0.09 -9.72 16 9 C -0.07 -0.65 5.82 -29.03 -0.17 -0.82 16 10 C 0.31 4.02 6.48 -155.70 -1.01 3.01 16 11 N -0.53 -8.06 11.19 -8.16 -0.09 -8.16 16 12 C 0.26 3.66 7.69 -156.86 -1.21 2.45 16 13 C -0.07 -0.77 6.33 -91.77 -0.58 -1.35 16 14 C -0.16 -1.38 10.14 -26.70 -0.27 -1.65 16 15 C -0.16 -1.50 10.24 -26.70 -0.27 -1.77 16 16 N -0.32 -4.49 12.24 32.42 0.40 -4.10 16 17 N -0.37 -4.65 4.04 -65.10 -0.26 -4.91 16 18 C 0.10 0.75 11.16 59.85 0.67 1.41 16 19 C -0.12 -1.95 5.46 -26.69 -0.15 -2.10 16 20 C -0.14 -2.69 6.08 -26.61 -0.16 -2.85 16 21 C 0.17 3.90 5.29 -3.72 -0.02 3.88 16 22 N -0.58 -13.78 2.99 -164.77 -0.49 -14.27 16 23 C -0.25 -6.60 8.60 -15.06 -0.13 -6.73 16 24 H 0.07 1.81 6.21 -52.48 -0.33 1.48 16 25 C 0.00 0.11 4.93 -17.43 -0.09 0.03 16 26 N -0.90 -25.39 11.22 55.49 0.62 -24.76 16 27 Si 0.90 21.34 29.58 -169.99 -5.03 16.31 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 31 H 0.04 0.57 7.79 -51.93 -0.40 0.16 16 32 H 0.06 1.23 7.66 -51.93 -0.40 0.84 16 33 H 0.05 1.07 7.40 -51.93 -0.38 0.68 16 34 H 0.40 3.78 8.60 -40.82 -0.35 3.43 16 35 H 0.12 0.62 7.76 -51.93 -0.40 0.22 16 36 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.10 0.97 7.88 -51.93 -0.41 0.56 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.62 7.72 -51.93 -0.40 0.22 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.09 2.28 6.11 -51.93 -0.32 1.96 16 51 H 0.25 6.93 8.31 -40.82 -0.34 6.60 16 LS Contribution 410.57 15.07 6.19 6.19 Total: -1.00 -35.19 410.57 -10.76 -45.96 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -8.42 Total: 3.49 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -3.52 Total: 3.34 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -0.07 Total: -65.57 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.19 -10.76 -45.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994497890.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.954 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds