Wall clock time and date at job start Wed Apr 1 2020 06:29:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 109.58304 * 2 1
4 4 C 1.53188 * 109.58471 * 120.42968 * 2 1 3
5 5 C 1.53042 * 109.31142 * 174.42135 * 4 2 1
6 6 H 1.09007 * 109.44903 * 58.64963 * 5 4 2
7 7 N 1.46494 * 109.46283 * 178.61274 * 5 4 2
8 8 C 1.36945 * 120.00317 * 205.06874 * 7 5 4
9 9 H 1.08000 * 119.99649 * 359.97438 * 8 7 5
10 10 C 1.38803 * 119.99939 * 179.97438 * 8 7 5
11 11 N 1.31620 * 120.00343 * 0.02562 * 10 8 7
12 12 Si 1.86805 * 119.99754 * 179.97438 * 10 8 7
13 13 H 1.48498 * 109.47082 * 180.02562 * 12 10 8
14 14 H 1.48501 * 109.47158 * 59.99981 * 12 10 8
15 15 H 1.48500 * 109.47234 * 300.00156 * 12 10 8
16 16 C 1.53040 * 109.53776 * 298.63508 * 5 4 2
17 17 C 1.53199 * 109.31117 * 61.36392 * 16 5 4
18 18 N 1.46923 * 108.77523 * 305.36339 * 17 16 5
19 19 C 1.34776 * 120.63287 * 233.63041 * 18 17 16
20 20 O 1.21276 * 120.00017 * 174.95104 * 19 18 17
21 21 C 1.50699 * 119.99623 * 354.95449 * 19 18 17
22 22 N 1.46505 * 109.46931 * 179.97438 * 21 19 18
23 23 N 1.29104 * 126.00894 * 90.02309 * 22 21 19
24 24 N 1.29022 * 110.26165 * 179.90301 * 23 22 21
25 25 C 1.32906 * 108.63137 * 359.97438 * 24 23 22
26 26 C 1.34394 * 126.00417 * 269.71432 * 22 21 19
27 27 C 1.50536 * 129.25688 * 0.26309 * 26 22 21
28 28 C 1.53433 * 108.32478 * 163.49467 * 27 26 22
29 29 C 1.53114 * 109.54491 * 49.71857 * 28 27 26
30 30 C 1.50595 * 129.15894 * 180.20041 * 25 24 23
31 31 H 1.08999 * 109.47085 * 175.94779 * 1 2 3
32 32 H 1.09009 * 109.46881 * 295.94205 * 1 2 3
33 33 H 1.08996 * 109.47090 * 55.94021 * 1 2 3
34 34 H 1.08991 * 109.50117 * 54.47404 * 4 2 1
35 35 H 1.08998 * 109.50275 * 294.36887 * 4 2 1
36 36 H 0.97005 * 120.00108 * 25.06677 * 7 5 4
37 37 H 0.96994 * 119.99592 * 0.02562 * 11 10 8
38 38 H 1.09004 * 109.49531 * 181.31329 * 16 5 4
39 39 H 1.08992 * 109.49838 * 301.37974 * 16 5 4
40 40 H 1.08998 * 109.58526 * 65.15591 * 17 16 5
41 41 H 1.08998 * 109.58180 * 185.57474 * 17 16 5
42 42 H 1.08996 * 109.47454 * 299.99922 * 21 19 18
43 43 H 1.09004 * 109.47207 * 59.99929 * 21 19 18
44 44 H 1.09000 * 109.69376 * 283.20508 * 27 26 22
45 45 H 1.09007 * 109.69149 * 43.74922 * 27 26 22
46 46 H 1.08997 * 109.45903 * 169.73826 * 28 27 26
47 47 H 1.09000 * 109.46085 * 289.70048 * 28 27 26
48 48 H 1.09003 * 109.45754 * 49.96097 * 29 28 27
49 49 H 1.09006 * 109.44919 * 169.89011 * 29 28 27
50 50 H 1.09001 * 109.69593 * 283.14977 * 30 25 24
51 51 H 1.08995 * 109.69387 * 43.72991 * 30 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0435 -0.7310 1.2444
5 6 3.5675 -0.8495 1.1690
6 1 4.0060 0.1460 1.0994
7 7 4.0652 -1.5188 2.3733
8 6 5.3494 -1.3012 2.7965
9 1 5.9953 -0.6365 2.2421
10 6 5.8207 -1.9350 3.9379
11 7 5.0337 -2.7454 4.6133
12 14 7.5726 -1.6387 4.5147
13 1 7.8280 -2.4270 5.7470
14 1 7.7614 -0.1942 4.8025
15 1 8.5213 -2.0600 3.4527
16 6 3.9569 -1.6656 -0.0657
17 6 3.4650 -0.9452 -1.3250
18 7 2.0225 -0.6980 -1.1954
19 6 1.1672 -1.1041 -2.1546
20 8 -0.0282 -0.9767 -1.9947
21 6 1.6965 -1.7167 -3.4257
22 7 0.5758 -2.0722 -4.2999
23 7 0.0374 -1.3098 -5.1918
24 7 -0.9253 -1.9293 -5.7870
25 6 -1.0288 -3.1493 -5.2701
26 6 -0.0686 -3.2514 -4.3181
27 6 0.1671 -4.4789 -3.4792
28 6 -1.0681 -5.3825 -3.5886
29 6 -1.4353 -5.5720 -5.0629
30 6 -1.9890 -4.2539 -5.6246
31 1 -0.3633 -1.0251 -0.0726
32 1 -0.3633 0.4496 0.9242
33 1 -0.3633 0.5755 -0.8513
34 1 1.6030 -1.7269 1.2891
35 1 1.7661 -0.1696 2.1366
36 1 3.4852 -2.1161 2.8711
37 1 4.1244 -2.9001 4.3132
38 1 5.0412 -1.7694 -0.1060
39 1 3.4988 -2.6530 -0.0084
40 1 3.9903 0.0039 -1.4317
41 1 3.6518 -1.5689 -2.1992
42 1 2.3408 -0.9994 -3.9340
43 1 2.2686 -2.6131 -3.1863
44 1 1.0450 -5.0111 -3.8455
45 1 0.3203 -4.1894 -2.4396
46 1 -0.8495 -6.3521 -3.1413
47 1 -1.9037 -4.9204 -3.0629
48 1 -0.5477 -5.8659 -5.6232
49 1 -2.1938 -6.3499 -5.1509
50 1 -2.9671 -4.0433 -5.1921
51 1 -2.0752 -4.3320 -6.7083
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001044746088.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:29:08
Heat of formation + Delta-G solvation = 81.225705 kcal
Electronic energy + Delta-G solvation = -31653.676432 eV
Core-core repulsion = 27590.644614 eV
Total energy + Delta-G solvation = -4063.031818 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-43.57159 -40.70942 -37.79385 -37.31868 -35.15961 -34.92188 -33.00091 -32.23348
-30.83940 -30.33252 -29.43640 -28.38457 -27.07577 -24.42918 -24.28510 -23.19610
-22.96833 -22.74987 -21.31549 -20.47877 -19.87241 -19.30877 -17.67433 -17.39255
-17.32585 -16.28022 -16.03931 -15.75731 -15.24005 -14.97077 -14.38970 -14.31588
-14.28100 -14.15202 -13.97486 -13.84296 -13.66672 -13.59499 -13.47716 -13.13604
-12.66265 -12.47870 -12.32472 -12.25411 -11.84753 -11.71359 -11.61942 -11.48158
-11.33812 -11.28882 -11.01906 -10.95657 -10.70470 -10.63396 -10.59025 -10.37208
-10.21867 -10.06345 -9.33666 -9.21251 -9.03065 -8.96610 -8.70764 -7.17198
-6.20426 -3.21934 1.34245 1.94886 2.21147 2.42857 2.78638 3.44280
3.47169 3.65059 3.88164 3.98181 4.13918 4.35610 4.47386 4.49548
4.55674 4.59362 4.67147 4.72940 4.93504 5.00538 5.03322 5.09273
5.10235 5.19036 5.25126 5.26242 5.33118 5.49860 5.50723 5.54819
5.57198 5.63806 5.67684 5.76810 5.80882 5.82517 5.90435 5.93715
5.98567 6.08471 6.10173 6.19246 6.23392 6.26829 6.37835 6.52596
6.65518 6.80302 7.15674 7.68867 7.83845 8.39186 8.64854 9.10445
9.97001 10.11419 11.27568
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.017404 B = 0.002399 C = 0.002290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1608.407226 B =11666.879228 C =12226.430666
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.149 3.851
3 H 0.075 0.925
4 C -0.136 4.136
5 C 0.184 3.816
6 H 0.050 0.950
7 N -0.735 5.735
8 C -0.334 4.334
9 H 0.065 0.935
10 C -0.043 4.043
11 N -0.942 5.942
12 Si 1.079 2.921
13 H -0.285 1.285
14 H -0.295 1.295
15 H -0.295 1.295
16 C -0.151 4.151
17 C 0.103 3.897
18 N -0.596 5.596
19 C 0.502 3.498
20 O -0.516 6.516
21 C 0.091 3.909
22 N -0.267 5.267
23 N -0.086 5.086
24 N -0.261 5.261
25 C -0.022 4.022
26 C -0.005 4.005
27 C -0.048 4.048
28 C -0.115 4.115
29 C -0.119 4.119
30 C -0.032 4.032
31 H 0.069 0.931
32 H 0.046 0.954
33 H 0.067 0.933
34 H 0.063 0.937
35 H 0.076 0.924
36 H 0.367 0.633
37 H 0.255 0.745
38 H 0.079 0.921
39 H 0.059 0.941
40 H 0.075 0.925
41 H 0.075 0.925
42 H 0.135 0.865
43 H 0.131 0.869
44 H 0.085 0.915
45 H 0.081 0.919
46 H 0.077 0.923
47 H 0.071 0.929
48 H 0.068 0.932
49 H 0.076 0.924
50 H 0.082 0.918
51 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.191 -3.300 -18.866 21.243
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.047 3.953
3 H 0.093 0.907
4 C -0.175 4.175
5 C 0.074 3.926
6 H 0.068 0.932
7 N -0.376 5.376
8 C -0.465 4.465
9 H 0.083 0.917
10 C -0.241 4.241
11 N -0.587 5.587
12 Si 0.909 3.091
13 H -0.210 1.210
14 H -0.222 1.222
15 H -0.222 1.222
16 C -0.192 4.192
17 C -0.020 4.020
18 N -0.330 5.330
19 C 0.287 3.713
20 O -0.392 6.392
21 C -0.034 4.034
22 N -0.058 5.058
23 N -0.064 5.064
24 N -0.126 5.126
25 C -0.162 4.162
26 C -0.139 4.139
27 C -0.088 4.088
28 C -0.153 4.153
29 C -0.157 4.157
30 C -0.071 4.071
31 H 0.088 0.912
32 H 0.065 0.935
33 H 0.086 0.914
34 H 0.081 0.919
35 H 0.095 0.905
36 H 0.200 0.800
37 H 0.067 0.933
38 H 0.098 0.902
39 H 0.078 0.922
40 H 0.094 0.906
41 H 0.093 0.907
42 H 0.153 0.847
43 H 0.148 0.852
44 H 0.103 0.897
45 H 0.099 0.901
46 H 0.096 0.904
47 H 0.089 0.911
48 H 0.086 0.914
49 H 0.094 0.906
50 H 0.100 0.900
51 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -8.480 -2.021 -18.350 20.316
hybrid contribution -0.848 -0.588 -0.415 1.112
sum -9.328 -2.609 -18.765 21.118
Atomic orbital electron populations
1.22203 0.92662 1.03636 1.00741 1.21373 0.95527 0.95133 0.83290
0.90676 1.22321 0.97595 1.00915 0.96652 1.20090 0.90688 0.95058
0.86782 0.93198 1.42434 1.13124 1.54615 1.27437 1.20008 0.89571
1.26489 1.10446 0.91727 1.25777 1.06268 0.97472 0.94584 1.70890
1.08182 1.38183 1.41399 0.83261 0.74071 0.75551 0.76192 1.21004
1.22210 1.22240 1.22678 1.02043 0.99858 0.94614 1.21977 0.79239
1.01095 0.99708 1.48176 1.07615 1.57194 1.19999 1.20271 0.87057
0.79561 0.84429 1.90858 1.15129 1.54664 1.78556 1.22017 0.86589
1.04718 0.90089 1.46288 1.24395 1.09556 1.25553 1.78576 1.07382
1.18156 1.02295 1.74779 1.11185 1.05067 1.21576 1.21596 1.00477
0.95493 0.98622 1.21768 0.98329 0.90564 1.03196 1.20219 0.99986
0.90294 0.98262 1.21573 0.97114 0.99408 0.97167 1.21677 1.01578
0.96673 0.95762 1.19977 0.95934 0.89507 1.01675 0.91224 0.93538
0.91386 0.91851 0.90492 0.79993 0.93348 0.90217 0.92224 0.90639
0.90688 0.84674 0.85152 0.89675 0.90087 0.90404 0.91053 0.91361
0.90579 0.89960 0.89984
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.85 7.59 37.16 0.28 -1.57 16
2 C 0.15 1.96 3.49 -67.60 -0.24 1.73 16
3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
4 C -0.14 -2.06 4.84 -26.61 -0.13 -2.19 16
5 C 0.18 3.23 2.73 -67.89 -0.19 3.05 16
6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16
7 N -0.73 -16.98 5.12 -53.39 -0.27 -17.25 16
8 C -0.33 -8.79 9.93 -15.06 -0.15 -8.94 16
9 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16
10 C -0.04 -1.20 5.50 -17.43 -0.10 -1.29 16
11 N -0.94 -28.10 13.70 55.49 0.76 -27.34 16
12 Si 1.08 24.80 29.92 -169.99 -5.09 19.71 16
13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16
14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16
15 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16
16 C -0.15 -2.18 5.66 -26.61 -0.15 -2.33 16
17 C 0.10 1.06 6.33 -3.71 -0.02 1.04 16
18 N -0.60 -7.04 2.97 -165.22 -0.49 -7.53 16
19 C 0.50 6.20 7.67 -10.99 -0.08 6.11 16
20 O -0.52 -8.15 11.83 5.56 0.07 -8.09 16
21 C 0.09 0.86 5.13 -5.19 -0.03 0.83 16
22 N -0.27 -3.33 2.82 -58.43 -0.16 -3.50 16
23 N -0.09 -1.32 13.19 60.35 0.80 -0.52 16
24 N -0.26 -4.01 12.40 33.16 0.41 -3.60 16
25 C -0.02 -0.28 7.11 -83.12 -0.59 -0.87 16
26 C -0.01 -0.06 6.76 -82.50 -0.56 -0.62 16
27 C -0.05 -0.40 5.94 -27.74 -0.16 -0.57 16
28 C -0.11 -0.80 5.90 -26.45 -0.16 -0.95 16
29 C -0.12 -0.75 5.91 -26.36 -0.16 -0.91 16
30 C -0.03 -0.27 6.31 -27.62 -0.17 -0.45 16
31 H 0.07 1.06 6.73 -51.93 -0.35 0.71 16
32 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16
33 H 0.07 1.01 6.77 -51.93 -0.35 0.66 16
34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
35 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16
36 H 0.37 8.93 6.63 -40.82 -0.27 8.66 16
37 H 0.26 7.49 6.77 -40.82 -0.28 7.21 16
38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16
39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
41 H 0.07 0.54 5.96 -51.93 -0.31 0.23 16
42 H 0.14 0.98 8.11 -51.93 -0.42 0.56 16
43 H 0.13 0.84 7.29 -51.93 -0.38 0.46 16
44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
47 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16
48 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16
49 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
51 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
LS Contribution 396.30 15.07 5.97 5.97
Total: -1.00 -34.72 396.30 -8.93 -43.65
By element:
Atomic # 1 Polarization: 14.75 SS G_CDS: -8.32 Total: 6.42 kcal
Atomic # 6 Polarization: -5.33 SS G_CDS: -2.60 Total: -7.93 kcal
Atomic # 7 Polarization: -60.78 SS G_CDS: 1.04 Total: -59.74 kcal
Atomic # 8 Polarization: -8.15 SS G_CDS: 0.07 Total: -8.09 kcal
Atomic # 14 Polarization: 24.80 SS G_CDS: -5.09 Total: 19.71 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -34.72 -8.93 -43.65 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001044746088.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 124.878 kcal
(2) G-P(sol) polarization free energy of solvation -34.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.155 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal
(6) G-S(sol) free energy of system = (1) + (5) 81.226 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds