Wall clock time and date at job start Wed Apr 1 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.58304 * 2 1 4 4 C 1.53188 * 109.58471 * 120.42968 * 2 1 3 5 5 C 1.53042 * 109.31142 * 174.42135 * 4 2 1 6 6 H 1.09007 * 109.44903 * 58.64963 * 5 4 2 7 7 N 1.46494 * 109.46283 * 178.61274 * 5 4 2 8 8 C 1.36945 * 120.00317 * 205.06874 * 7 5 4 9 9 H 1.08000 * 119.99649 * 359.97438 * 8 7 5 10 10 C 1.38803 * 119.99939 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00343 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99754 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47082 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47158 * 59.99981 * 12 10 8 15 15 H 1.48500 * 109.47234 * 300.00156 * 12 10 8 16 16 C 1.53040 * 109.53776 * 298.63508 * 5 4 2 17 17 C 1.53199 * 109.31117 * 61.36392 * 16 5 4 18 18 N 1.46923 * 108.77523 * 305.36339 * 17 16 5 19 19 C 1.34776 * 120.63287 * 233.63041 * 18 17 16 20 20 O 1.21276 * 120.00017 * 174.95104 * 19 18 17 21 21 C 1.50699 * 119.99623 * 354.95449 * 19 18 17 22 22 N 1.46505 * 109.46931 * 179.97438 * 21 19 18 23 23 N 1.29104 * 126.00894 * 90.02309 * 22 21 19 24 24 N 1.29022 * 110.26165 * 179.90301 * 23 22 21 25 25 C 1.32906 * 108.63137 * 359.97438 * 24 23 22 26 26 C 1.34394 * 126.00417 * 269.71432 * 22 21 19 27 27 C 1.50536 * 129.25688 * 0.26309 * 26 22 21 28 28 C 1.53433 * 108.32478 * 163.49467 * 27 26 22 29 29 C 1.53114 * 109.54491 * 49.71857 * 28 27 26 30 30 C 1.50595 * 129.15894 * 180.20041 * 25 24 23 31 31 H 1.08999 * 109.47085 * 175.94779 * 1 2 3 32 32 H 1.09009 * 109.46881 * 295.94205 * 1 2 3 33 33 H 1.08996 * 109.47090 * 55.94021 * 1 2 3 34 34 H 1.08991 * 109.50117 * 54.47404 * 4 2 1 35 35 H 1.08998 * 109.50275 * 294.36887 * 4 2 1 36 36 H 0.97005 * 120.00108 * 25.06677 * 7 5 4 37 37 H 0.96994 * 119.99592 * 0.02562 * 11 10 8 38 38 H 1.09004 * 109.49531 * 181.31329 * 16 5 4 39 39 H 1.08992 * 109.49838 * 301.37974 * 16 5 4 40 40 H 1.08998 * 109.58526 * 65.15591 * 17 16 5 41 41 H 1.08998 * 109.58180 * 185.57474 * 17 16 5 42 42 H 1.08996 * 109.47454 * 299.99922 * 21 19 18 43 43 H 1.09004 * 109.47207 * 59.99929 * 21 19 18 44 44 H 1.09000 * 109.69376 * 283.20508 * 27 26 22 45 45 H 1.09007 * 109.69149 * 43.74922 * 27 26 22 46 46 H 1.08997 * 109.45903 * 169.73826 * 28 27 26 47 47 H 1.09000 * 109.46085 * 289.70048 * 28 27 26 48 48 H 1.09003 * 109.45754 * 49.96097 * 29 28 27 49 49 H 1.09006 * 109.44919 * 169.89011 * 29 28 27 50 50 H 1.09001 * 109.69593 * 283.14977 * 30 25 24 51 51 H 1.08995 * 109.69387 * 43.72991 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 1 4.0060 0.1460 1.0994 7 7 4.0652 -1.5188 2.3733 8 6 5.3494 -1.3012 2.7965 9 1 5.9953 -0.6365 2.2421 10 6 5.8207 -1.9350 3.9379 11 7 5.0337 -2.7454 4.6133 12 14 7.5726 -1.6387 4.5147 13 1 7.8280 -2.4270 5.7470 14 1 7.7614 -0.1942 4.8025 15 1 8.5213 -2.0600 3.4527 16 6 3.9569 -1.6656 -0.0657 17 6 3.4650 -0.9452 -1.3250 18 7 2.0225 -0.6980 -1.1954 19 6 1.1672 -1.1041 -2.1546 20 8 -0.0282 -0.9767 -1.9947 21 6 1.6965 -1.7167 -3.4257 22 7 0.5758 -2.0722 -4.2999 23 7 0.0374 -1.3098 -5.1918 24 7 -0.9253 -1.9293 -5.7870 25 6 -1.0288 -3.1493 -5.2701 26 6 -0.0686 -3.2514 -4.3181 27 6 0.1671 -4.4789 -3.4792 28 6 -1.0681 -5.3825 -3.5886 29 6 -1.4353 -5.5720 -5.0629 30 6 -1.9890 -4.2539 -5.6246 31 1 -0.3633 -1.0251 -0.0726 32 1 -0.3633 0.4496 0.9242 33 1 -0.3633 0.5755 -0.8513 34 1 1.6030 -1.7269 1.2891 35 1 1.7661 -0.1696 2.1366 36 1 3.4852 -2.1161 2.8711 37 1 4.1244 -2.9001 4.3132 38 1 5.0412 -1.7694 -0.1060 39 1 3.4988 -2.6530 -0.0084 40 1 3.9903 0.0039 -1.4317 41 1 3.6518 -1.5689 -2.1992 42 1 2.3408 -0.9994 -3.9340 43 1 2.2686 -2.6131 -3.1863 44 1 1.0450 -5.0111 -3.8455 45 1 0.3203 -4.1894 -2.4396 46 1 -0.8495 -6.3521 -3.1413 47 1 -1.9037 -4.9204 -3.0629 48 1 -0.5477 -5.8659 -5.6232 49 1 -2.1938 -6.3499 -5.1509 50 1 -2.9671 -4.0433 -5.1921 51 1 -2.0752 -4.3320 -6.7083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044746088.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:08 Heat of formation + Delta-G solvation = 81.225705 kcal Electronic energy + Delta-G solvation = -31653.676432 eV Core-core repulsion = 27590.644614 eV Total energy + Delta-G solvation = -4063.031818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.57159 -40.70942 -37.79385 -37.31868 -35.15961 -34.92188 -33.00091 -32.23348 -30.83940 -30.33252 -29.43640 -28.38457 -27.07577 -24.42918 -24.28510 -23.19610 -22.96833 -22.74987 -21.31549 -20.47877 -19.87241 -19.30877 -17.67433 -17.39255 -17.32585 -16.28022 -16.03931 -15.75731 -15.24005 -14.97077 -14.38970 -14.31588 -14.28100 -14.15202 -13.97486 -13.84296 -13.66672 -13.59499 -13.47716 -13.13604 -12.66265 -12.47870 -12.32472 -12.25411 -11.84753 -11.71359 -11.61942 -11.48158 -11.33812 -11.28882 -11.01906 -10.95657 -10.70470 -10.63396 -10.59025 -10.37208 -10.21867 -10.06345 -9.33666 -9.21251 -9.03065 -8.96610 -8.70764 -7.17198 -6.20426 -3.21934 1.34245 1.94886 2.21147 2.42857 2.78638 3.44280 3.47169 3.65059 3.88164 3.98181 4.13918 4.35610 4.47386 4.49548 4.55674 4.59362 4.67147 4.72940 4.93504 5.00538 5.03322 5.09273 5.10235 5.19036 5.25126 5.26242 5.33118 5.49860 5.50723 5.54819 5.57198 5.63806 5.67684 5.76810 5.80882 5.82517 5.90435 5.93715 5.98567 6.08471 6.10173 6.19246 6.23392 6.26829 6.37835 6.52596 6.65518 6.80302 7.15674 7.68867 7.83845 8.39186 8.64854 9.10445 9.97001 10.11419 11.27568 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.002399 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.407226 B =11666.879228 C =12226.430666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.184 3.816 6 H 0.050 0.950 7 N -0.735 5.735 8 C -0.334 4.334 9 H 0.065 0.935 10 C -0.043 4.043 11 N -0.942 5.942 12 Si 1.079 2.921 13 H -0.285 1.285 14 H -0.295 1.295 15 H -0.295 1.295 16 C -0.151 4.151 17 C 0.103 3.897 18 N -0.596 5.596 19 C 0.502 3.498 20 O -0.516 6.516 21 C 0.091 3.909 22 N -0.267 5.267 23 N -0.086 5.086 24 N -0.261 5.261 25 C -0.022 4.022 26 C -0.005 4.005 27 C -0.048 4.048 28 C -0.115 4.115 29 C -0.119 4.119 30 C -0.032 4.032 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.367 0.633 37 H 0.255 0.745 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.191 -3.300 -18.866 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.047 3.953 3 H 0.093 0.907 4 C -0.175 4.175 5 C 0.074 3.926 6 H 0.068 0.932 7 N -0.376 5.376 8 C -0.465 4.465 9 H 0.083 0.917 10 C -0.241 4.241 11 N -0.587 5.587 12 Si 0.909 3.091 13 H -0.210 1.210 14 H -0.222 1.222 15 H -0.222 1.222 16 C -0.192 4.192 17 C -0.020 4.020 18 N -0.330 5.330 19 C 0.287 3.713 20 O -0.392 6.392 21 C -0.034 4.034 22 N -0.058 5.058 23 N -0.064 5.064 24 N -0.126 5.126 25 C -0.162 4.162 26 C -0.139 4.139 27 C -0.088 4.088 28 C -0.153 4.153 29 C -0.157 4.157 30 C -0.071 4.071 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.200 0.800 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.480 -2.021 -18.350 20.316 hybrid contribution -0.848 -0.588 -0.415 1.112 sum -9.328 -2.609 -18.765 21.118 Atomic orbital electron populations 1.22203 0.92662 1.03636 1.00741 1.21373 0.95527 0.95133 0.83290 0.90676 1.22321 0.97595 1.00915 0.96652 1.20090 0.90688 0.95058 0.86782 0.93198 1.42434 1.13124 1.54615 1.27437 1.20008 0.89571 1.26489 1.10446 0.91727 1.25777 1.06268 0.97472 0.94584 1.70890 1.08182 1.38183 1.41399 0.83261 0.74071 0.75551 0.76192 1.21004 1.22210 1.22240 1.22678 1.02043 0.99858 0.94614 1.21977 0.79239 1.01095 0.99708 1.48176 1.07615 1.57194 1.19999 1.20271 0.87057 0.79561 0.84429 1.90858 1.15129 1.54664 1.78556 1.22017 0.86589 1.04718 0.90089 1.46288 1.24395 1.09556 1.25553 1.78576 1.07382 1.18156 1.02295 1.74779 1.11185 1.05067 1.21576 1.21596 1.00477 0.95493 0.98622 1.21768 0.98329 0.90564 1.03196 1.20219 0.99986 0.90294 0.98262 1.21573 0.97114 0.99408 0.97167 1.21677 1.01578 0.96673 0.95762 1.19977 0.95934 0.89507 1.01675 0.91224 0.93538 0.91386 0.91851 0.90492 0.79993 0.93348 0.90217 0.92224 0.90639 0.90688 0.84674 0.85152 0.89675 0.90087 0.90404 0.91053 0.91361 0.90579 0.89960 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.59 37.16 0.28 -1.57 16 2 C 0.15 1.96 3.49 -67.60 -0.24 1.73 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -2.06 4.84 -26.61 -0.13 -2.19 16 5 C 0.18 3.23 2.73 -67.89 -0.19 3.05 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 N -0.73 -16.98 5.12 -53.39 -0.27 -17.25 16 8 C -0.33 -8.79 9.93 -15.06 -0.15 -8.94 16 9 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 10 C -0.04 -1.20 5.50 -17.43 -0.10 -1.29 16 11 N -0.94 -28.10 13.70 55.49 0.76 -27.34 16 12 Si 1.08 24.80 29.92 -169.99 -5.09 19.71 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 16 C -0.15 -2.18 5.66 -26.61 -0.15 -2.33 16 17 C 0.10 1.06 6.33 -3.71 -0.02 1.04 16 18 N -0.60 -7.04 2.97 -165.22 -0.49 -7.53 16 19 C 0.50 6.20 7.67 -10.99 -0.08 6.11 16 20 O -0.52 -8.15 11.83 5.56 0.07 -8.09 16 21 C 0.09 0.86 5.13 -5.19 -0.03 0.83 16 22 N -0.27 -3.33 2.82 -58.43 -0.16 -3.50 16 23 N -0.09 -1.32 13.19 60.35 0.80 -0.52 16 24 N -0.26 -4.01 12.40 33.16 0.41 -3.60 16 25 C -0.02 -0.28 7.11 -83.12 -0.59 -0.87 16 26 C -0.01 -0.06 6.76 -82.50 -0.56 -0.62 16 27 C -0.05 -0.40 5.94 -27.74 -0.16 -0.57 16 28 C -0.11 -0.80 5.90 -26.45 -0.16 -0.95 16 29 C -0.12 -0.75 5.91 -26.36 -0.16 -0.91 16 30 C -0.03 -0.27 6.31 -27.62 -0.17 -0.45 16 31 H 0.07 1.06 6.73 -51.93 -0.35 0.71 16 32 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.07 1.01 6.77 -51.93 -0.35 0.66 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.37 8.93 6.63 -40.82 -0.27 8.66 16 37 H 0.26 7.49 6.77 -40.82 -0.28 7.21 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.54 5.96 -51.93 -0.31 0.23 16 42 H 0.14 0.98 8.11 -51.93 -0.42 0.56 16 43 H 0.13 0.84 7.29 -51.93 -0.38 0.46 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 48 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16 49 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -34.72 396.30 -8.93 -43.65 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.32 Total: 6.42 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.60 Total: -7.93 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 1.04 Total: -59.74 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.07 Total: -8.09 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.09 Total: 19.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.72 -8.93 -43.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044746088.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.878 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds