Wall clock time and date at job start Wed Apr 1 2020 06:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.58304 * 2 1 4 4 C 1.53188 * 109.58471 * 120.42968 * 2 1 3 5 5 C 1.53042 * 109.31142 * 174.42135 * 4 2 1 6 6 H 1.09007 * 109.44903 * 58.64963 * 5 4 2 7 7 N 1.46494 * 109.46283 * 178.61274 * 5 4 2 8 8 C 1.36945 * 120.00317 * 205.06874 * 7 5 4 9 9 H 1.08000 * 119.99649 * 359.97438 * 8 7 5 10 10 C 1.38803 * 119.99939 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00343 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99754 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47082 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47158 * 59.99981 * 12 10 8 15 15 H 1.48500 * 109.47234 * 300.00156 * 12 10 8 16 16 C 1.53040 * 109.53776 * 298.63508 * 5 4 2 17 17 C 1.53199 * 109.31117 * 61.36392 * 16 5 4 18 18 N 1.46923 * 108.77523 * 305.36339 * 17 16 5 19 19 C 1.34776 * 120.63287 * 233.63041 * 18 17 16 20 20 O 1.21276 * 120.00017 * 174.95104 * 19 18 17 21 21 C 1.50699 * 119.99623 * 354.95449 * 19 18 17 22 22 N 1.46505 * 109.46931 * 179.97438 * 21 19 18 23 23 N 1.29104 * 126.00894 * 90.02309 * 22 21 19 24 24 N 1.29022 * 110.26165 * 179.90301 * 23 22 21 25 25 C 1.32906 * 108.63137 * 359.97438 * 24 23 22 26 26 C 1.34394 * 126.00417 * 269.71432 * 22 21 19 27 27 C 1.50536 * 129.25688 * 0.26309 * 26 22 21 28 28 C 1.53433 * 108.32478 * 163.49467 * 27 26 22 29 29 C 1.53114 * 109.54491 * 49.71857 * 28 27 26 30 30 C 1.50595 * 129.15894 * 180.20041 * 25 24 23 31 31 H 1.08999 * 109.47085 * 175.94779 * 1 2 3 32 32 H 1.09009 * 109.46881 * 295.94205 * 1 2 3 33 33 H 1.08996 * 109.47090 * 55.94021 * 1 2 3 34 34 H 1.08991 * 109.50117 * 54.47404 * 4 2 1 35 35 H 1.08998 * 109.50275 * 294.36887 * 4 2 1 36 36 H 0.97005 * 120.00108 * 25.06677 * 7 5 4 37 37 H 0.96994 * 119.99592 * 0.02562 * 11 10 8 38 38 H 1.09004 * 109.49531 * 181.31329 * 16 5 4 39 39 H 1.08992 * 109.49838 * 301.37974 * 16 5 4 40 40 H 1.08998 * 109.58526 * 65.15591 * 17 16 5 41 41 H 1.08998 * 109.58180 * 185.57474 * 17 16 5 42 42 H 1.08996 * 109.47454 * 299.99922 * 21 19 18 43 43 H 1.09004 * 109.47207 * 59.99929 * 21 19 18 44 44 H 1.09000 * 109.69376 * 283.20508 * 27 26 22 45 45 H 1.09007 * 109.69149 * 43.74922 * 27 26 22 46 46 H 1.08997 * 109.45903 * 169.73826 * 28 27 26 47 47 H 1.09000 * 109.46085 * 289.70048 * 28 27 26 48 48 H 1.09003 * 109.45754 * 49.96097 * 29 28 27 49 49 H 1.09006 * 109.44919 * 169.89011 * 29 28 27 50 50 H 1.09001 * 109.69593 * 283.14977 * 30 25 24 51 51 H 1.08995 * 109.69387 * 43.72991 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 1 4.0060 0.1460 1.0994 7 7 4.0652 -1.5188 2.3733 8 6 5.3494 -1.3012 2.7965 9 1 5.9953 -0.6365 2.2421 10 6 5.8207 -1.9350 3.9379 11 7 5.0337 -2.7454 4.6133 12 14 7.5726 -1.6387 4.5147 13 1 7.8280 -2.4270 5.7470 14 1 7.7614 -0.1942 4.8025 15 1 8.5213 -2.0600 3.4527 16 6 3.9569 -1.6656 -0.0657 17 6 3.4650 -0.9452 -1.3250 18 7 2.0225 -0.6980 -1.1954 19 6 1.1672 -1.1041 -2.1546 20 8 -0.0282 -0.9767 -1.9947 21 6 1.6965 -1.7167 -3.4257 22 7 0.5758 -2.0722 -4.2999 23 7 0.0374 -1.3098 -5.1918 24 7 -0.9253 -1.9293 -5.7870 25 6 -1.0288 -3.1493 -5.2701 26 6 -0.0686 -3.2514 -4.3181 27 6 0.1671 -4.4789 -3.4792 28 6 -1.0681 -5.3825 -3.5886 29 6 -1.4353 -5.5720 -5.0629 30 6 -1.9890 -4.2539 -5.6246 31 1 -0.3633 -1.0251 -0.0726 32 1 -0.3633 0.4496 0.9242 33 1 -0.3633 0.5755 -0.8513 34 1 1.6030 -1.7269 1.2891 35 1 1.7661 -0.1696 2.1366 36 1 3.4852 -2.1161 2.8711 37 1 4.1244 -2.9001 4.3132 38 1 5.0412 -1.7694 -0.1060 39 1 3.4988 -2.6530 -0.0084 40 1 3.9903 0.0039 -1.4317 41 1 3.6518 -1.5689 -2.1992 42 1 2.3408 -0.9994 -3.9340 43 1 2.2686 -2.6131 -3.1863 44 1 1.0450 -5.0111 -3.8455 45 1 0.3203 -4.1894 -2.4396 46 1 -0.8495 -6.3521 -3.1413 47 1 -1.9037 -4.9204 -3.0629 48 1 -0.5477 -5.8659 -5.6232 49 1 -2.1938 -6.3499 -5.1509 50 1 -2.9671 -4.0433 -5.1921 51 1 -2.0752 -4.3320 -6.7083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044746088.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:07 Heat of formation + Delta-G solvation = 58.680890 kcal Electronic energy + Delta-G solvation = -31654.654048 eV Core-core repulsion = 27590.644614 eV Total energy + Delta-G solvation = -4064.009435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.47729 -41.74817 -39.00610 -37.97706 -36.53807 -36.05207 -34.17932 -33.76855 -31.55250 -31.13432 -30.88934 -29.42244 -28.29142 -25.89154 -25.13320 -24.66762 -23.88343 -23.61535 -22.36544 -21.71630 -20.62260 -20.31284 -19.34728 -18.53077 -18.24768 -17.22014 -17.05463 -16.93645 -16.42043 -16.00813 -15.91054 -15.40690 -15.24101 -15.02973 -14.95598 -14.82526 -14.73185 -14.62518 -14.47275 -14.22046 -13.67408 -13.42999 -13.39145 -13.27018 -13.08656 -12.82358 -12.64501 -12.58065 -12.44622 -12.27115 -12.14803 -12.02113 -11.93099 -11.88276 -11.83356 -11.64638 -11.36453 -11.27515 -11.16285 -10.88692 -10.27641 -9.84539 -9.77720 -9.11514 -8.35901 -5.30889 0.42932 1.14439 1.27823 1.48654 1.60234 1.69301 1.84574 1.85171 2.72542 3.10472 3.13912 3.42066 3.45473 3.56825 3.68064 3.72513 3.82527 3.86124 3.93030 3.96316 3.97343 4.07625 4.13507 4.21971 4.40309 4.46767 4.49669 4.52160 4.55301 4.55975 4.58058 4.65738 4.69816 4.87336 4.90119 4.95615 4.98180 5.00767 5.06312 5.10481 5.17031 5.18869 5.30616 5.32956 5.41698 5.43062 5.51874 5.57325 5.63096 6.19783 6.51555 6.87780 7.10875 7.43093 8.00705 8.13333 9.15837 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.002399 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.407226 B =11666.879228 C =12226.430666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.155 3.845 3 H 0.088 0.912 4 C -0.122 4.122 5 C 0.177 3.823 6 H 0.046 0.954 7 N -0.750 5.750 8 C -0.322 4.322 9 H 0.071 0.929 10 C -0.107 4.107 11 N -0.980 5.980 12 Si 1.124 2.876 13 H -0.298 1.298 14 H -0.280 1.280 15 H -0.275 1.275 16 C -0.140 4.140 17 C 0.109 3.891 18 N -0.594 5.594 19 C 0.502 3.498 20 O -0.555 6.555 21 C 0.088 3.912 22 N -0.267 5.267 23 N -0.123 5.123 24 N -0.298 5.298 25 C -0.038 4.038 26 C -0.004 4.004 27 C -0.048 4.048 28 C -0.115 4.115 29 C -0.111 4.111 30 C -0.034 4.034 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.356 0.644 37 H 0.243 0.757 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.163 0.837 43 H 0.168 0.832 44 H 0.111 0.889 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.056 0.944 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.081 0.919 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 -3.960 -20.600 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 H 0.105 0.895 4 C -0.162 4.162 5 C 0.069 3.931 6 H 0.064 0.936 7 N -0.391 5.391 8 C -0.454 4.454 9 H 0.089 0.911 10 C -0.298 4.298 11 N -0.628 5.628 12 Si 0.950 3.050 13 H -0.225 1.225 14 H -0.206 1.206 15 H -0.201 1.201 16 C -0.181 4.181 17 C -0.013 4.013 18 N -0.327 5.327 19 C 0.289 3.711 20 O -0.434 6.434 21 C -0.036 4.036 22 N -0.058 5.058 23 N -0.100 5.100 24 N -0.162 5.162 25 C -0.179 4.179 26 C -0.139 4.139 27 C -0.087 4.087 28 C -0.153 4.153 29 C -0.149 4.149 30 C -0.073 4.073 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.188 0.812 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.137 0.863 42 H 0.180 0.820 43 H 0.185 0.815 44 H 0.129 0.871 45 H 0.093 0.907 46 H 0.118 0.882 47 H 0.075 0.925 48 H 0.094 0.906 49 H 0.116 0.884 50 H 0.099 0.901 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.093 -2.633 -20.157 21.530 hybrid contribution -1.357 -0.348 0.110 1.405 sum -8.450 -2.981 -20.048 21.959 Atomic orbital electron populations 1.22022 0.93052 1.02322 1.00534 1.21235 0.95042 0.95548 0.82994 0.89458 1.22144 0.95983 1.00490 0.97543 1.20367 0.91836 0.94768 0.86166 0.93608 1.42675 1.12209 1.54932 1.29297 1.20348 0.90661 1.24787 1.09594 0.91121 1.27099 1.09327 0.97800 0.95571 1.70998 1.08151 1.40763 1.42888 0.82664 0.70706 0.75997 0.75678 1.22482 1.20584 1.20060 1.22428 1.01386 0.99301 0.94960 1.22080 0.77953 1.02328 0.98927 1.48176 1.08308 1.56782 1.19418 1.20731 0.86493 0.78767 0.85138 1.90857 1.16921 1.56142 1.79483 1.22354 0.86059 1.06955 0.88220 1.46520 1.24662 1.09516 1.25124 1.78479 1.08410 1.19197 1.03876 1.74713 1.11965 1.06580 1.22909 1.22279 1.01380 0.95399 0.98807 1.22365 0.97535 0.91139 1.02835 1.20409 1.01711 0.89269 0.97308 1.21614 0.96033 0.99981 0.97644 1.21667 1.02443 0.95700 0.95097 1.20155 0.95268 0.89618 1.02290 0.92973 0.92881 0.92478 0.92878 0.91562 0.81210 0.94624 0.91211 0.92984 0.88910 0.86324 0.81971 0.81458 0.87063 0.90661 0.88221 0.92536 0.90609 0.88449 0.90056 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.31 7.59 71.98 0.55 -2.77 16 2 C 0.16 3.88 3.49 44.97 0.16 4.04 16 3 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.12 -3.68 4.84 30.67 0.15 -3.53 16 5 C 0.18 6.04 2.73 45.02 0.12 6.16 16 6 H 0.05 1.61 8.08 -2.38 -0.02 1.59 16 7 N -0.75 -34.83 5.12 -322.81 -1.65 -36.48 16 8 C -0.32 -16.85 9.93 84.03 0.83 -16.02 16 9 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 10 C -0.11 -5.94 5.50 84.86 0.47 -5.48 16 11 N -0.98 -59.65 13.70 21.65 0.30 -59.36 16 12 Si 1.12 49.65 29.92 68.60 2.05 51.70 16 13 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 14 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 16 C -0.14 -3.74 5.66 30.67 0.17 -3.57 16 17 C 0.11 1.83 6.33 86.37 0.55 2.38 16 18 N -0.59 -12.55 2.97 -795.04 -2.36 -14.92 16 19 C 0.50 11.36 7.67 87.66 0.67 12.04 16 20 O -0.56 -17.28 11.83 -3.02 -0.04 -17.32 16 21 C 0.09 1.38 5.13 85.63 0.44 1.81 16 22 N -0.27 -6.24 2.82 -338.77 -0.95 -7.20 16 23 N -0.12 -3.70 13.19 37.02 0.49 -3.21 16 24 N -0.30 -9.22 12.40 -48.99 -0.61 -9.83 16 25 C -0.04 -0.93 7.11 41.75 0.30 -0.64 16 26 C 0.00 -0.09 6.76 41.50 0.28 0.19 16 27 C -0.05 -0.67 5.94 29.94 0.18 -0.50 16 28 C -0.11 -1.32 5.90 30.78 0.18 -1.14 16 29 C -0.11 -1.13 5.91 30.83 0.18 -0.94 16 30 C -0.03 -0.55 6.31 30.02 0.19 -0.36 16 31 H 0.05 1.60 6.73 -2.39 -0.02 1.58 16 32 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.06 1.69 6.77 -2.39 -0.02 1.67 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.36 17.83 6.63 -92.70 -0.61 17.21 16 37 H 0.24 14.77 6.77 -92.71 -0.63 14.14 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.12 1.03 5.96 -2.39 -0.01 1.02 16 42 H 0.16 1.67 8.11 -2.39 -0.02 1.66 16 43 H 0.17 1.34 7.29 -2.38 -0.02 1.32 16 44 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 0.82 8.11 -2.39 -0.02 0.81 16 48 H 0.08 0.68 8.12 -2.39 -0.02 0.67 16 49 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 50 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -79.20 396.30 3.10 -76.10 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.46 Total: 28.83 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 5.42 Total: -8.32 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -4.79 Total: -130.99 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.04 Total: -17.32 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.05 Total: 51.70 kcal Total: -79.20 3.10 -76.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044746088.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.776 kcal (2) G-P(sol) polarization free energy of solvation -79.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds