Wall clock time and date at job start Wed Apr 1 2020 06:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.91086 * 2 1 4 4 C 1.53995 * 109.91418 * 238.89871 * 2 1 3 5 5 H 1.09000 * 110.30888 * 120.31318 * 4 2 1 6 6 C 1.50694 * 110.31120 * 358.14246 * 4 2 1 7 7 O 1.21284 * 120.00062 * 273.48591 * 6 4 2 8 8 N 1.34778 * 120.00188 * 93.48557 * 6 4 2 9 9 C 1.46497 * 120.00373 * 180.02562 * 8 6 4 10 10 C 1.50697 * 109.47457 * 179.97438 * 9 8 6 11 11 C 1.40077 * 126.12368 * 259.69120 * 10 9 8 12 12 N 1.31017 * 108.25467 * 179.85106 * 11 10 9 13 13 N 1.39745 * 108.17458 * 0.60532 * 12 11 10 14 14 C 1.34636 * 126.12569 * 79.99371 * 10 9 8 15 15 C 1.51039 * 127.91114 * 359.65933 * 14 10 9 16 16 N 1.47500 * 107.00164 * 169.52441 * 15 14 10 17 17 C 1.36937 * 121.01598 * 222.90110 * 16 15 14 18 18 H 1.07997 * 120.00640 * 155.08034 * 17 16 15 19 19 C 1.38816 * 119.99553 * 335.08446 * 17 16 15 20 20 N 1.31612 * 120.00230 * 347.53832 * 19 17 16 21 21 Si 1.86798 * 119.99762 * 167.53006 * 19 17 16 22 22 H 1.48500 * 109.47403 * 60.00573 * 21 19 17 23 23 H 1.48507 * 109.47133 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47525 * 300.00017 * 21 19 17 25 25 C 1.47094 * 117.97709 * 42.92335 * 16 15 14 26 26 C 1.46556 * 127.32190 * 179.18950 * 13 12 11 27 27 C 1.54599 * 105.14088 * 239.22665 * 4 2 1 28 28 C 1.54937 * 102.91943 * 338.04222 * 27 4 2 29 29 N 1.47902 * 109.91648 * 121.10940 * 2 1 3 30 30 C 1.46898 * 110.99733 * 265.38780 * 29 2 1 31 31 H 1.08991 * 109.47742 * 182.74273 * 1 2 3 32 32 H 1.08999 * 109.46748 * 302.74571 * 1 2 3 33 33 H 1.09002 * 109.46968 * 62.74140 * 1 2 3 34 34 H 0.97003 * 119.99904 * 359.97438 * 8 6 4 35 35 H 1.08997 * 109.47162 * 299.99871 * 9 8 6 36 36 H 1.08998 * 109.47454 * 59.99626 * 9 8 6 37 37 H 1.07994 * 125.87412 * 0.03303 * 11 10 9 38 38 H 1.08995 * 109.94568 * 288.89450 * 15 14 10 39 39 H 1.08998 * 109.94952 * 50.15646 * 15 14 10 40 40 H 0.97000 * 120.00438 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.51215 * 56.34468 * 25 16 15 42 42 H 1.09001 * 109.51121 * 176.44527 * 25 16 15 43 43 H 1.08997 * 109.51009 * 41.59689 * 26 13 12 44 44 H 1.08995 * 109.54533 * 281.47888 * 26 13 12 45 45 H 1.08997 * 110.72550 * 96.40477 * 27 4 2 46 46 H 1.09002 * 110.72537 * 219.68643 * 27 4 2 47 47 H 1.09000 * 110.66392 * 155.85112 * 28 27 4 48 48 H 1.08998 * 110.66906 * 278.81060 * 28 27 4 49 49 H 1.09000 * 109.47249 * 60.00236 * 30 29 2 50 50 H 1.08996 * 109.47290 * 180.02562 * 30 29 2 51 51 H 1.09007 * 109.47683 * 300.00267 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0545 -0.7479 -1.2397 5 1 2.6684 -0.0852 -1.8497 6 6 0.9046 -1.2897 -2.0491 7 8 0.4326 -2.3744 -1.7816 8 7 0.4007 -0.5689 -3.0704 9 6 -0.7175 -1.0953 -3.8570 10 6 -1.0886 -0.1034 -4.9290 11 6 -2.1574 0.8009 -4.8831 12 7 -2.1551 1.4958 -5.9939 13 7 -1.0952 1.0471 -6.7865 14 6 -0.4557 0.0685 -6.1049 15 6 0.7569 -0.6683 -6.6225 16 7 0.9096 -0.3029 -8.0433 17 6 1.2137 -1.2482 -8.9863 18 1 0.9387 -1.0895 -10.0185 19 6 1.8755 -2.4107 -8.6152 20 7 2.4263 -2.5027 -7.4234 21 14 1.9841 -3.8446 -9.8075 22 1 2.6866 -3.4103 -11.0416 23 1 2.7361 -4.9583 -9.1752 24 1 0.6155 -4.3057 -10.1532 25 6 0.7258 1.1079 -8.4166 26 6 -0.7192 1.5240 -8.1203 27 6 2.9099 -1.9076 -0.6798 28 6 3.2732 -1.4143 0.7433 29 7 2.0338 -0.7185 1.1906 30 6 2.3168 0.2156 2.2884 31 1 -0.3634 -1.0264 0.0492 32 1 -0.3633 0.5559 0.8644 33 1 -0.3633 0.4707 -0.9136 34 1 0.7779 0.2988 -3.2842 35 1 -0.4246 -2.0379 -4.3193 36 1 -1.5744 -1.2618 -3.2042 37 1 -2.8605 0.9090 -4.0706 38 1 1.6424 -0.3658 -6.0636 39 1 0.6064 -1.7438 -6.5293 40 1 2.8884 -3.3151 -7.1640 41 1 1.4095 1.7295 -7.8386 42 1 0.9307 1.2329 -9.4799 43 1 -0.7994 2.6105 -8.1544 44 1 -1.3841 1.0863 -8.8648 45 1 2.3281 -2.8280 -0.6322 46 1 3.8086 -2.0488 -1.2802 47 1 3.4974 -2.2572 1.3970 48 1 4.1148 -0.7225 0.7075 49 1 1.4032 0.7446 2.5600 50 1 2.6862 -0.3387 3.1511 51 1 3.0713 0.9344 1.9687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069861743.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:45 Heat of formation + Delta-G solvation = 76.012948 kcal Electronic energy + Delta-G solvation = -31726.265631 eV Core-core repulsion = 27663.007771 eV Total energy + Delta-G solvation = -4063.257860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.01132 -40.32940 -38.03284 -36.31743 -34.71732 -33.02388 -32.47594 -31.55155 -31.11374 -30.22196 -28.85425 -26.84741 -25.94318 -25.03255 -24.72038 -23.50143 -21.94056 -21.61031 -21.03623 -20.16406 -19.35885 -18.34240 -16.98428 -16.73813 -16.50075 -15.86947 -15.68262 -15.26111 -15.10266 -14.82923 -14.68660 -14.47296 -13.90420 -13.71165 -13.66694 -13.34439 -13.31478 -13.16816 -12.78819 -12.67502 -12.45805 -12.20124 -12.15477 -11.79562 -11.69662 -11.60512 -11.40945 -11.32540 -11.23849 -11.00282 -10.94227 -10.88014 -10.76397 -10.74720 -10.22424 -10.17838 -10.10795 -9.57162 -8.92661 -8.67718 -8.63479 -8.55380 -7.92058 -7.08778 -6.02267 -3.47020 2.42120 2.90085 2.94851 3.01671 3.28489 3.35794 3.35909 3.74022 3.79681 4.30147 4.46384 4.48405 4.84536 4.95334 5.05322 5.06023 5.09023 5.17891 5.19937 5.22564 5.31051 5.36738 5.37766 5.51881 5.54623 5.57309 5.60261 5.62196 5.67900 5.70348 5.74982 5.84609 5.86843 5.95103 6.16237 6.21082 6.22085 6.29205 6.37877 6.39981 6.55528 6.69272 6.77828 6.86081 6.91648 7.08811 7.15981 7.55931 7.59935 7.84670 8.08934 8.23228 8.53972 8.91240 9.52736 10.05538 11.08371 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011083 B = 0.003199 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.792512 B = 8751.634622 C =10462.408112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.057 0.943 4 C -0.119 4.119 5 H 0.093 0.907 6 C 0.530 3.470 7 O -0.539 6.539 8 N -0.720 5.720 9 C 0.210 3.790 10 C -0.288 4.288 11 C 0.056 3.944 12 N -0.319 5.319 13 N -0.358 5.358 14 C 0.119 3.881 15 C 0.231 3.769 16 N -0.597 5.597 17 C -0.264 4.264 18 H 0.073 0.927 19 C 0.009 3.991 20 N -0.905 5.905 21 Si 0.911 3.089 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.282 1.282 25 C 0.129 3.871 26 C 0.114 3.886 27 C -0.112 4.112 28 C 0.035 3.965 29 N -0.515 5.515 30 C 0.016 3.984 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.398 0.602 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.175 0.825 38 H 0.056 0.944 39 H 0.111 0.889 40 H 0.260 0.740 41 H 0.035 0.965 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.045 0.955 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.079 7.831 13.460 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 H 0.075 0.925 4 C -0.141 4.141 5 H 0.111 0.889 6 C 0.316 3.684 7 O -0.416 6.416 8 N -0.370 5.370 9 C 0.087 3.913 10 C -0.300 4.300 11 C -0.131 4.131 12 N -0.139 5.139 13 N -0.140 5.140 14 C -0.013 4.013 15 C 0.105 3.895 16 N -0.319 5.319 17 C -0.393 4.393 18 H 0.090 0.910 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.740 3.260 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.208 1.208 25 C 0.001 3.999 26 C -0.010 4.010 27 C -0.150 4.150 28 C -0.092 4.092 29 N -0.239 5.239 30 C -0.132 4.132 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.192 0.808 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.264 7.521 13.057 15.121 hybrid contribution 1.179 -0.118 -0.564 1.312 sum -0.085 7.403 12.493 14.522 Atomic orbital electron populations 1.21951 0.93507 1.03683 1.01489 1.22226 0.96855 0.95351 0.88450 0.92463 1.22248 0.96350 0.99089 0.96461 0.88877 1.20048 0.83688 0.84804 0.79898 1.90677 1.61074 1.21144 1.68717 1.46275 1.35929 1.22303 1.32523 1.19288 0.88102 0.94449 0.89491 1.19438 1.03373 1.08561 0.98599 1.23670 0.98278 0.94730 0.96407 1.77168 1.08223 1.24060 1.04422 1.48494 1.22287 1.28326 1.14845 1.22618 0.96816 0.90390 0.91454 1.19946 0.87384 0.98748 0.83444 1.44190 1.81926 1.01674 1.04142 1.19120 1.32107 0.97835 0.90233 0.90967 1.25066 0.96891 0.99795 0.97295 1.69889 1.37278 1.27790 1.19868 0.86245 0.77871 0.81768 0.80129 1.20730 1.21306 1.20815 1.21271 0.90572 0.87591 1.00498 1.22536 1.00201 0.99101 0.79161 1.22506 0.99364 0.98678 0.94432 1.23328 0.90985 0.98449 0.96446 1.64864 1.26451 1.26306 1.06269 1.22514 1.00551 0.95214 0.94950 0.90636 0.92746 0.91838 0.76850 0.90906 0.91451 0.80816 0.92687 0.87090 0.92964 0.94657 0.89750 0.90243 0.90629 0.88519 0.90459 0.89744 0.93658 0.91362 0.91240 0.95501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.36 37.16 0.31 -1.39 16 2 C 0.08 0.87 3.07 -66.64 -0.20 0.67 16 3 H 0.06 0.55 7.73 -51.93 -0.40 0.15 16 4 C -0.12 -1.43 3.38 -90.42 -0.31 -1.73 16 5 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 6 C 0.53 7.87 4.75 -10.99 -0.05 7.82 16 7 O -0.54 -9.91 14.98 5.55 0.08 -9.82 16 8 N -0.72 -10.20 5.03 -61.48 -0.31 -10.51 16 9 C 0.21 3.34 5.95 -5.20 -0.03 3.31 16 10 C -0.29 -4.89 5.46 -105.21 -0.57 -5.47 16 11 C 0.06 0.90 11.97 -17.21 -0.21 0.69 16 12 N -0.32 -5.83 12.61 30.70 0.39 -5.44 16 13 N -0.36 -6.79 4.03 -56.93 -0.23 -7.02 16 14 C 0.12 2.32 6.71 -82.16 -0.55 1.77 16 15 C 0.23 5.14 5.09 -4.48 -0.02 5.11 16 16 N -0.60 -13.72 3.01 -172.96 -0.52 -14.24 16 17 C -0.26 -6.69 9.67 -15.06 -0.15 -6.83 16 18 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 19 C 0.01 0.23 5.07 -17.43 -0.09 0.14 16 20 N -0.90 -24.29 10.94 55.49 0.61 -23.68 16 21 Si 0.91 20.68 29.57 -169.99 -5.03 15.65 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.13 2.38 6.49 -3.59 -0.02 2.35 16 26 C 0.11 1.91 7.44 -3.88 -0.03 1.89 16 27 C -0.11 -1.32 6.56 -24.87 -0.16 -1.48 16 28 C 0.04 0.35 6.58 -1.63 -0.01 0.34 16 29 N -0.51 -5.57 5.20 -230.37 -1.20 -6.77 16 30 C 0.02 0.14 9.42 60.06 0.57 0.70 16 31 H 0.07 1.06 7.02 -51.93 -0.36 0.70 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.71 7.09 -51.93 -0.37 0.34 16 34 H 0.40 5.11 8.46 -40.82 -0.35 4.77 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.11 2.80 6.43 -51.93 -0.33 2.46 16 40 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.10 1.37 6.89 -51.93 -0.36 1.01 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.05 0.40 7.98 -51.93 -0.41 -0.02 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.03 0.21 8.02 -51.93 -0.42 -0.21 16 LS Contribution 402.18 15.07 6.06 6.06 Total: -1.00 -30.21 402.18 -10.14 -40.34 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.46 Total: 7.54 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -1.53 Total: 7.88 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -1.26 Total: -67.66 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.21 -10.14 -40.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069861743.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.356 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds