Wall clock time and date at job start Wed Apr 1 2020 06:34:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08997 * 109.91086 * 2 1
4 4 C 1.53995 * 109.91418 * 238.89871 * 2 1 3
5 5 H 1.09000 * 110.30888 * 120.31318 * 4 2 1
6 6 C 1.50694 * 110.31120 * 358.14246 * 4 2 1
7 7 O 1.21284 * 120.00062 * 273.48591 * 6 4 2
8 8 N 1.34778 * 120.00188 * 93.48557 * 6 4 2
9 9 C 1.46497 * 120.00373 * 180.02562 * 8 6 4
10 10 C 1.50697 * 109.47457 * 179.97438 * 9 8 6
11 11 C 1.40077 * 126.12368 * 259.69120 * 10 9 8
12 12 N 1.31017 * 108.25467 * 179.85106 * 11 10 9
13 13 N 1.39745 * 108.17458 * 0.60532 * 12 11 10
14 14 C 1.34636 * 126.12569 * 79.99371 * 10 9 8
15 15 C 1.51039 * 127.91114 * 359.65933 * 14 10 9
16 16 N 1.47500 * 107.00164 * 169.52441 * 15 14 10
17 17 C 1.36937 * 121.01598 * 222.90110 * 16 15 14
18 18 H 1.07997 * 120.00640 * 155.08034 * 17 16 15
19 19 C 1.38816 * 119.99553 * 335.08446 * 17 16 15
20 20 N 1.31612 * 120.00230 * 347.53832 * 19 17 16
21 21 Si 1.86798 * 119.99762 * 167.53006 * 19 17 16
22 22 H 1.48500 * 109.47403 * 60.00573 * 21 19 17
23 23 H 1.48507 * 109.47133 * 180.02562 * 21 19 17
24 24 H 1.48500 * 109.47525 * 300.00017 * 21 19 17
25 25 C 1.47094 * 117.97709 * 42.92335 * 16 15 14
26 26 C 1.46556 * 127.32190 * 179.18950 * 13 12 11
27 27 C 1.54599 * 105.14088 * 239.22665 * 4 2 1
28 28 C 1.54937 * 102.91943 * 338.04222 * 27 4 2
29 29 N 1.47902 * 109.91648 * 121.10940 * 2 1 3
30 30 C 1.46898 * 110.99733 * 265.38780 * 29 2 1
31 31 H 1.08991 * 109.47742 * 182.74273 * 1 2 3
32 32 H 1.08999 * 109.46748 * 302.74571 * 1 2 3
33 33 H 1.09002 * 109.46968 * 62.74140 * 1 2 3
34 34 H 0.97003 * 119.99904 * 359.97438 * 8 6 4
35 35 H 1.08997 * 109.47162 * 299.99871 * 9 8 6
36 36 H 1.08998 * 109.47454 * 59.99626 * 9 8 6
37 37 H 1.07994 * 125.87412 * 0.03303 * 11 10 9
38 38 H 1.08995 * 109.94568 * 288.89450 * 15 14 10
39 39 H 1.08998 * 109.94952 * 50.15646 * 15 14 10
40 40 H 0.97000 * 120.00438 * 179.97438 * 20 19 17
41 41 H 1.08996 * 109.51215 * 56.34468 * 25 16 15
42 42 H 1.09001 * 109.51121 * 176.44527 * 25 16 15
43 43 H 1.08997 * 109.51009 * 41.59689 * 26 13 12
44 44 H 1.08995 * 109.54533 * 281.47888 * 26 13 12
45 45 H 1.08997 * 110.72550 * 96.40477 * 27 4 2
46 46 H 1.09002 * 110.72537 * 219.68643 * 27 4 2
47 47 H 1.09000 * 110.66392 * 155.85112 * 28 27 4
48 48 H 1.08998 * 110.66906 * 278.81060 * 28 27 4
49 49 H 1.09000 * 109.47249 * 60.00236 * 30 29 2
50 50 H 1.08996 * 109.47290 * 180.02562 * 30 29 2
51 51 H 1.09007 * 109.47683 * 300.00267 * 30 29 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9012 1.0248 0.0000
4 6 2.0545 -0.7479 -1.2397
5 1 2.6684 -0.0852 -1.8497
6 6 0.9046 -1.2897 -2.0491
7 8 0.4326 -2.3744 -1.7816
8 7 0.4007 -0.5689 -3.0704
9 6 -0.7175 -1.0953 -3.8570
10 6 -1.0886 -0.1034 -4.9290
11 6 -2.1574 0.8009 -4.8831
12 7 -2.1551 1.4958 -5.9939
13 7 -1.0952 1.0471 -6.7865
14 6 -0.4557 0.0685 -6.1049
15 6 0.7569 -0.6683 -6.6225
16 7 0.9096 -0.3029 -8.0433
17 6 1.2137 -1.2482 -8.9863
18 1 0.9387 -1.0895 -10.0185
19 6 1.8755 -2.4107 -8.6152
20 7 2.4263 -2.5027 -7.4234
21 14 1.9841 -3.8446 -9.8075
22 1 2.6866 -3.4103 -11.0416
23 1 2.7361 -4.9583 -9.1752
24 1 0.6155 -4.3057 -10.1532
25 6 0.7258 1.1079 -8.4166
26 6 -0.7192 1.5240 -8.1203
27 6 2.9099 -1.9076 -0.6798
28 6 3.2732 -1.4143 0.7433
29 7 2.0338 -0.7185 1.1906
30 6 2.3168 0.2156 2.2884
31 1 -0.3634 -1.0264 0.0492
32 1 -0.3633 0.5559 0.8644
33 1 -0.3633 0.4707 -0.9136
34 1 0.7779 0.2988 -3.2842
35 1 -0.4246 -2.0379 -4.3193
36 1 -1.5744 -1.2618 -3.2042
37 1 -2.8605 0.9090 -4.0706
38 1 1.6424 -0.3658 -6.0636
39 1 0.6064 -1.7438 -6.5293
40 1 2.8884 -3.3151 -7.1640
41 1 1.4095 1.7295 -7.8386
42 1 0.9307 1.2329 -9.4799
43 1 -0.7994 2.6105 -8.1544
44 1 -1.3841 1.0863 -8.8648
45 1 2.3281 -2.8280 -0.6322
46 1 3.8086 -2.0488 -1.2802
47 1 3.4974 -2.2572 1.3970
48 1 4.1148 -0.7225 0.7075
49 1 1.4032 0.7446 2.5600
50 1 2.6862 -0.3387 3.1511
51 1 3.0713 0.9344 1.9687
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001069861743.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:34:45
Heat of formation + Delta-G solvation = 76.012948 kcal
Electronic energy + Delta-G solvation = -31726.265631 eV
Core-core repulsion = 27663.007771 eV
Total energy + Delta-G solvation = -4063.257860 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-41.01132 -40.32940 -38.03284 -36.31743 -34.71732 -33.02388 -32.47594 -31.55155
-31.11374 -30.22196 -28.85425 -26.84741 -25.94318 -25.03255 -24.72038 -23.50143
-21.94056 -21.61031 -21.03623 -20.16406 -19.35885 -18.34240 -16.98428 -16.73813
-16.50075 -15.86947 -15.68262 -15.26111 -15.10266 -14.82923 -14.68660 -14.47296
-13.90420 -13.71165 -13.66694 -13.34439 -13.31478 -13.16816 -12.78819 -12.67502
-12.45805 -12.20124 -12.15477 -11.79562 -11.69662 -11.60512 -11.40945 -11.32540
-11.23849 -11.00282 -10.94227 -10.88014 -10.76397 -10.74720 -10.22424 -10.17838
-10.10795 -9.57162 -8.92661 -8.67718 -8.63479 -8.55380 -7.92058 -7.08778
-6.02267 -3.47020 2.42120 2.90085 2.94851 3.01671 3.28489 3.35794
3.35909 3.74022 3.79681 4.30147 4.46384 4.48405 4.84536 4.95334
5.05322 5.06023 5.09023 5.17891 5.19937 5.22564 5.31051 5.36738
5.37766 5.51881 5.54623 5.57309 5.60261 5.62196 5.67900 5.70348
5.74982 5.84609 5.86843 5.95103 6.16237 6.21082 6.22085 6.29205
6.37877 6.39981 6.55528 6.69272 6.77828 6.86081 6.91648 7.08811
7.15981 7.55931 7.59935 7.84670 8.08934 8.23228 8.53972 8.91240
9.52736 10.05538 11.08371
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.011083 B = 0.003199 C = 0.002676
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2525.792512 B = 8751.634622 C =10462.408112
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.080 3.920
3 H 0.057 0.943
4 C -0.119 4.119
5 H 0.093 0.907
6 C 0.530 3.470
7 O -0.539 6.539
8 N -0.720 5.720
9 C 0.210 3.790
10 C -0.288 4.288
11 C 0.056 3.944
12 N -0.319 5.319
13 N -0.358 5.358
14 C 0.119 3.881
15 C 0.231 3.769
16 N -0.597 5.597
17 C -0.264 4.264
18 H 0.073 0.927
19 C 0.009 3.991
20 N -0.905 5.905
21 Si 0.911 3.089
22 H -0.281 1.281
23 H -0.287 1.287
24 H -0.282 1.282
25 C 0.129 3.871
26 C 0.114 3.886
27 C -0.112 4.112
28 C 0.035 3.965
29 N -0.515 5.515
30 C 0.016 3.984
31 H 0.075 0.925
32 H 0.053 0.947
33 H 0.063 0.937
34 H 0.398 0.602
35 H 0.073 0.927
36 H 0.067 0.933
37 H 0.175 0.825
38 H 0.056 0.944
39 H 0.111 0.889
40 H 0.260 0.740
41 H 0.035 0.965
42 H 0.084 0.916
43 H 0.079 0.921
44 H 0.075 0.925
45 H 0.096 0.904
46 H 0.077 0.923
47 H 0.084 0.916
48 H 0.045 0.955
49 H 0.068 0.932
50 H 0.069 0.931
51 H 0.026 0.974
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.079 7.831 13.460 15.572
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.029 4.029
3 H 0.075 0.925
4 C -0.141 4.141
5 H 0.111 0.889
6 C 0.316 3.684
7 O -0.416 6.416
8 N -0.370 5.370
9 C 0.087 3.913
10 C -0.300 4.300
11 C -0.131 4.131
12 N -0.139 5.139
13 N -0.140 5.140
14 C -0.013 4.013
15 C 0.105 3.895
16 N -0.319 5.319
17 C -0.393 4.393
18 H 0.090 0.910
19 C -0.190 4.190
20 N -0.548 5.548
21 Si 0.740 3.260
22 H -0.207 1.207
23 H -0.213 1.213
24 H -0.208 1.208
25 C 0.001 3.999
26 C -0.010 4.010
27 C -0.150 4.150
28 C -0.092 4.092
29 N -0.239 5.239
30 C -0.132 4.132
31 H 0.094 0.906
32 H 0.073 0.927
33 H 0.082 0.918
34 H 0.231 0.769
35 H 0.091 0.909
36 H 0.085 0.915
37 H 0.192 0.808
38 H 0.073 0.927
39 H 0.129 0.871
40 H 0.070 0.930
41 H 0.053 0.947
42 H 0.102 0.898
43 H 0.098 0.902
44 H 0.094 0.906
45 H 0.115 0.885
46 H 0.095 0.905
47 H 0.103 0.897
48 H 0.063 0.937
49 H 0.086 0.914
50 H 0.088 0.912
51 H 0.045 0.955
Dipole moment (debyes) X Y Z Total
from point charges -1.264 7.521 13.057 15.121
hybrid contribution 1.179 -0.118 -0.564 1.312
sum -0.085 7.403 12.493 14.522
Atomic orbital electron populations
1.21951 0.93507 1.03683 1.01489 1.22226 0.96855 0.95351 0.88450
0.92463 1.22248 0.96350 0.99089 0.96461 0.88877 1.20048 0.83688
0.84804 0.79898 1.90677 1.61074 1.21144 1.68717 1.46275 1.35929
1.22303 1.32523 1.19288 0.88102 0.94449 0.89491 1.19438 1.03373
1.08561 0.98599 1.23670 0.98278 0.94730 0.96407 1.77168 1.08223
1.24060 1.04422 1.48494 1.22287 1.28326 1.14845 1.22618 0.96816
0.90390 0.91454 1.19946 0.87384 0.98748 0.83444 1.44190 1.81926
1.01674 1.04142 1.19120 1.32107 0.97835 0.90233 0.90967 1.25066
0.96891 0.99795 0.97295 1.69889 1.37278 1.27790 1.19868 0.86245
0.77871 0.81768 0.80129 1.20730 1.21306 1.20815 1.21271 0.90572
0.87591 1.00498 1.22536 1.00201 0.99101 0.79161 1.22506 0.99364
0.98678 0.94432 1.23328 0.90985 0.98449 0.96446 1.64864 1.26451
1.26306 1.06269 1.22514 1.00551 0.95214 0.94950 0.90636 0.92746
0.91838 0.76850 0.90906 0.91451 0.80816 0.92687 0.87090 0.92964
0.94657 0.89750 0.90243 0.90629 0.88519 0.90459 0.89744 0.93658
0.91362 0.91240 0.95501
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.70 8.36 37.16 0.31 -1.39 16
2 C 0.08 0.87 3.07 -66.64 -0.20 0.67 16
3 H 0.06 0.55 7.73 -51.93 -0.40 0.15 16
4 C -0.12 -1.43 3.38 -90.42 -0.31 -1.73 16
5 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16
6 C 0.53 7.87 4.75 -10.99 -0.05 7.82 16
7 O -0.54 -9.91 14.98 5.55 0.08 -9.82 16
8 N -0.72 -10.20 5.03 -61.48 -0.31 -10.51 16
9 C 0.21 3.34 5.95 -5.20 -0.03 3.31 16
10 C -0.29 -4.89 5.46 -105.21 -0.57 -5.47 16
11 C 0.06 0.90 11.97 -17.21 -0.21 0.69 16
12 N -0.32 -5.83 12.61 30.70 0.39 -5.44 16
13 N -0.36 -6.79 4.03 -56.93 -0.23 -7.02 16
14 C 0.12 2.32 6.71 -82.16 -0.55 1.77 16
15 C 0.23 5.14 5.09 -4.48 -0.02 5.11 16
16 N -0.60 -13.72 3.01 -172.96 -0.52 -14.24 16
17 C -0.26 -6.69 9.67 -15.06 -0.15 -6.83 16
18 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16
19 C 0.01 0.23 5.07 -17.43 -0.09 0.14 16
20 N -0.90 -24.29 10.94 55.49 0.61 -23.68 16
21 Si 0.91 20.68 29.57 -169.99 -5.03 15.65 16
22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16
23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
25 C 0.13 2.38 6.49 -3.59 -0.02 2.35 16
26 C 0.11 1.91 7.44 -3.88 -0.03 1.89 16
27 C -0.11 -1.32 6.56 -24.87 -0.16 -1.48 16
28 C 0.04 0.35 6.58 -1.63 -0.01 0.34 16
29 N -0.51 -5.57 5.20 -230.37 -1.20 -6.77 16
30 C 0.02 0.14 9.42 60.06 0.57 0.70 16
31 H 0.07 1.06 7.02 -51.93 -0.36 0.70 16
32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.06 0.71 7.09 -51.93 -0.37 0.34 16
34 H 0.40 5.11 8.46 -40.82 -0.35 4.77 16
35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16
36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
37 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16
38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16
39 H 0.11 2.80 6.43 -51.93 -0.33 2.46 16
40 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16
41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
42 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16
43 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
45 H 0.10 1.37 6.89 -51.93 -0.36 1.01 16
46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
48 H 0.05 0.40 7.98 -51.93 -0.41 -0.02 16
49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
50 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
51 H 0.03 0.21 8.02 -51.93 -0.42 -0.21 16
LS Contribution 402.18 15.07 6.06 6.06
Total: -1.00 -30.21 402.18 -10.14 -40.34
By element:
Atomic # 1 Polarization: 16.00 SS G_CDS: -8.46 Total: 7.54 kcal
Atomic # 6 Polarization: 9.42 SS G_CDS: -1.53 Total: 7.88 kcal
Atomic # 7 Polarization: -66.40 SS G_CDS: -1.26 Total: -67.66 kcal
Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.82 kcal
Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -30.21 -10.14 -40.34 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001069861743.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.356 kcal
(2) G-P(sol) polarization free energy of solvation -30.207 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.149 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.013 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds