Wall clock time and date at job start Wed Apr 1 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.91086 * 2 1 4 4 C 1.53995 * 109.91418 * 238.89871 * 2 1 3 5 5 H 1.09000 * 110.30888 * 120.31318 * 4 2 1 6 6 C 1.50694 * 110.31120 * 358.14246 * 4 2 1 7 7 O 1.21284 * 120.00062 * 273.48591 * 6 4 2 8 8 N 1.34778 * 120.00188 * 93.48557 * 6 4 2 9 9 C 1.46497 * 120.00373 * 180.02562 * 8 6 4 10 10 C 1.50697 * 109.47457 * 179.97438 * 9 8 6 11 11 C 1.40077 * 126.12368 * 259.69120 * 10 9 8 12 12 N 1.31017 * 108.25467 * 179.85106 * 11 10 9 13 13 N 1.39745 * 108.17458 * 0.60532 * 12 11 10 14 14 C 1.34636 * 126.12569 * 79.99371 * 10 9 8 15 15 C 1.51039 * 127.91114 * 359.65933 * 14 10 9 16 16 N 1.47500 * 107.00164 * 169.52441 * 15 14 10 17 17 C 1.36937 * 121.01598 * 222.90110 * 16 15 14 18 18 H 1.07997 * 120.00640 * 155.08034 * 17 16 15 19 19 C 1.38816 * 119.99553 * 335.08446 * 17 16 15 20 20 N 1.31612 * 120.00230 * 347.53832 * 19 17 16 21 21 Si 1.86798 * 119.99762 * 167.53006 * 19 17 16 22 22 H 1.48500 * 109.47403 * 60.00573 * 21 19 17 23 23 H 1.48507 * 109.47133 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47525 * 300.00017 * 21 19 17 25 25 C 1.47094 * 117.97709 * 42.92335 * 16 15 14 26 26 C 1.46556 * 127.32190 * 179.18950 * 13 12 11 27 27 C 1.54599 * 105.14088 * 239.22665 * 4 2 1 28 28 C 1.54937 * 102.91943 * 338.04222 * 27 4 2 29 29 N 1.47902 * 109.91648 * 121.10940 * 2 1 3 30 30 C 1.46898 * 110.99733 * 265.38780 * 29 2 1 31 31 H 1.08991 * 109.47742 * 182.74273 * 1 2 3 32 32 H 1.08999 * 109.46748 * 302.74571 * 1 2 3 33 33 H 1.09002 * 109.46968 * 62.74140 * 1 2 3 34 34 H 0.97003 * 119.99904 * 359.97438 * 8 6 4 35 35 H 1.08997 * 109.47162 * 299.99871 * 9 8 6 36 36 H 1.08998 * 109.47454 * 59.99626 * 9 8 6 37 37 H 1.07994 * 125.87412 * 0.03303 * 11 10 9 38 38 H 1.08995 * 109.94568 * 288.89450 * 15 14 10 39 39 H 1.08998 * 109.94952 * 50.15646 * 15 14 10 40 40 H 0.97000 * 120.00438 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.51215 * 56.34468 * 25 16 15 42 42 H 1.09001 * 109.51121 * 176.44527 * 25 16 15 43 43 H 1.08997 * 109.51009 * 41.59689 * 26 13 12 44 44 H 1.08995 * 109.54533 * 281.47888 * 26 13 12 45 45 H 1.08997 * 110.72550 * 96.40477 * 27 4 2 46 46 H 1.09002 * 110.72537 * 219.68643 * 27 4 2 47 47 H 1.09000 * 110.66392 * 155.85112 * 28 27 4 48 48 H 1.08998 * 110.66906 * 278.81060 * 28 27 4 49 49 H 1.09000 * 109.47249 * 60.00236 * 30 29 2 50 50 H 1.08996 * 109.47290 * 180.02562 * 30 29 2 51 51 H 1.09007 * 109.47683 * 300.00267 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0545 -0.7479 -1.2397 5 1 2.6684 -0.0852 -1.8497 6 6 0.9046 -1.2897 -2.0491 7 8 0.4326 -2.3744 -1.7816 8 7 0.4007 -0.5689 -3.0704 9 6 -0.7175 -1.0953 -3.8570 10 6 -1.0886 -0.1034 -4.9290 11 6 -2.1574 0.8009 -4.8831 12 7 -2.1551 1.4958 -5.9939 13 7 -1.0952 1.0471 -6.7865 14 6 -0.4557 0.0685 -6.1049 15 6 0.7569 -0.6683 -6.6225 16 7 0.9096 -0.3029 -8.0433 17 6 1.2137 -1.2482 -8.9863 18 1 0.9387 -1.0895 -10.0185 19 6 1.8755 -2.4107 -8.6152 20 7 2.4263 -2.5027 -7.4234 21 14 1.9841 -3.8446 -9.8075 22 1 2.6866 -3.4103 -11.0416 23 1 2.7361 -4.9583 -9.1752 24 1 0.6155 -4.3057 -10.1532 25 6 0.7258 1.1079 -8.4166 26 6 -0.7192 1.5240 -8.1203 27 6 2.9099 -1.9076 -0.6798 28 6 3.2732 -1.4143 0.7433 29 7 2.0338 -0.7185 1.1906 30 6 2.3168 0.2156 2.2884 31 1 -0.3634 -1.0264 0.0492 32 1 -0.3633 0.5559 0.8644 33 1 -0.3633 0.4707 -0.9136 34 1 0.7779 0.2988 -3.2842 35 1 -0.4246 -2.0379 -4.3193 36 1 -1.5744 -1.2618 -3.2042 37 1 -2.8605 0.9090 -4.0706 38 1 1.6424 -0.3658 -6.0636 39 1 0.6064 -1.7438 -6.5293 40 1 2.8884 -3.3151 -7.1640 41 1 1.4095 1.7295 -7.8386 42 1 0.9307 1.2329 -9.4799 43 1 -0.7994 2.6105 -8.1544 44 1 -1.3841 1.0863 -8.8648 45 1 2.3281 -2.8280 -0.6322 46 1 3.8086 -2.0488 -1.2802 47 1 3.4974 -2.2572 1.3970 48 1 4.1148 -0.7225 0.7075 49 1 1.4032 0.7446 2.5600 50 1 2.6862 -0.3387 3.1511 51 1 3.0713 0.9344 1.9687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069861743.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:44 Heat of formation + Delta-G solvation = 55.420392 kcal Electronic energy + Delta-G solvation = -31727.158592 eV Core-core repulsion = 27663.007771 eV Total energy + Delta-G solvation = -4064.150820 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.42909 -41.40181 -39.06289 -37.95821 -36.06592 -34.63324 -33.46501 -32.79489 -32.29969 -31.79942 -30.26679 -28.03940 -27.44683 -26.07402 -25.81885 -25.10724 -23.38409 -22.76609 -21.91616 -21.58055 -20.52093 -19.84567 -18.54058 -18.11400 -17.69470 -17.13009 -16.93522 -16.58929 -16.41410 -16.02486 -15.93557 -15.47437 -15.45374 -15.21855 -14.97252 -14.75858 -14.62761 -14.33569 -13.95821 -13.85987 -13.50059 -13.33847 -13.28403 -13.06664 -13.05015 -12.93094 -12.72895 -12.66643 -12.59109 -12.36993 -12.23642 -12.07922 -12.03266 -11.91841 -11.86436 -11.68168 -11.59527 -10.83595 -10.76423 -10.05620 -9.95517 -9.37998 -9.37049 -8.93502 -7.97934 -5.43441 0.94296 1.46020 1.49102 1.54290 1.59961 1.67084 1.72933 2.44741 2.55111 3.00871 3.21659 3.43694 3.55642 3.57391 3.61959 3.84104 3.90089 4.15106 4.20066 4.21318 4.24644 4.31291 4.32976 4.38245 4.46252 4.50582 4.53021 4.54374 4.73913 4.77108 4.80111 4.82645 4.86449 4.88996 4.94837 5.00030 5.03027 5.04466 5.07561 5.24384 5.25806 5.35772 5.39484 5.53856 5.58143 5.76775 5.91013 6.10284 6.13640 6.21273 6.67039 6.81262 6.99960 7.35308 7.65560 8.16788 9.10695 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011083 B = 0.003199 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.792512 B = 8751.634622 C =10462.408112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.084 3.916 3 H 0.079 0.921 4 C -0.118 4.118 5 H 0.112 0.888 6 C 0.529 3.471 7 O -0.579 6.579 8 N -0.711 5.711 9 C 0.218 3.782 10 C -0.273 4.273 11 C 0.067 3.933 12 N -0.327 5.327 13 N -0.367 5.367 14 C 0.095 3.905 15 C 0.251 3.749 16 N -0.616 5.616 17 C -0.269 4.269 18 H 0.078 0.922 19 C -0.042 4.042 20 N -0.931 5.931 21 Si 0.967 3.033 22 H -0.271 1.271 23 H -0.296 1.296 24 H -0.283 1.283 25 C 0.129 3.871 26 C 0.117 3.883 27 C -0.115 4.115 28 C 0.042 3.958 29 N -0.536 5.536 30 C 0.017 3.983 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.407 0.593 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.214 0.786 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.252 0.748 41 H 0.041 0.959 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 10.118 14.036 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 H 0.097 0.903 4 C -0.140 4.140 5 H 0.130 0.870 6 C 0.316 3.684 7 O -0.459 6.459 8 N -0.362 5.362 9 C 0.094 3.906 10 C -0.285 4.285 11 C -0.120 4.120 12 N -0.147 5.147 13 N -0.149 5.149 14 C -0.036 4.036 15 C 0.124 3.876 16 N -0.340 5.340 17 C -0.398 4.398 18 H 0.096 0.904 19 C -0.238 4.238 20 N -0.576 5.576 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.222 1.222 24 H -0.209 1.209 25 C 0.002 3.998 26 C -0.006 4.006 27 C -0.153 4.153 28 C -0.085 4.085 29 N -0.261 5.261 30 C -0.132 4.132 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.242 0.758 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.230 0.770 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.117 0.883 43 H 0.130 0.870 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.646 9.865 13.610 16.889 hybrid contribution 1.244 -0.798 -0.724 1.645 sum -0.403 9.067 12.886 15.761 Atomic orbital electron populations 1.21877 0.94164 1.01829 1.02182 1.22230 0.96321 0.96130 0.87836 0.90293 1.22322 0.95256 0.99513 0.96907 0.87010 1.20593 0.83928 0.84147 0.79687 1.90659 1.62461 1.22963 1.69823 1.46158 1.35472 1.22539 1.32033 1.19101 0.89027 0.92951 0.89531 1.19528 1.03103 1.08156 0.97762 1.24231 0.97914 0.93207 0.96600 1.77163 1.07976 1.24574 1.04983 1.48679 1.22499 1.28269 1.15427 1.22246 0.96994 0.91594 0.92791 1.19365 0.88018 0.96825 0.83431 1.44422 1.82138 1.03443 1.03978 1.19454 1.30950 0.98441 0.90939 0.90391 1.25743 0.97418 1.01985 0.98662 1.70045 1.38458 1.27732 1.21333 0.85354 0.77495 0.78995 0.78665 1.19664 1.22173 1.20886 1.21433 0.91866 0.85048 1.01484 1.22527 0.98602 1.00950 0.78493 1.22487 0.99160 0.97453 0.96248 1.23301 0.91307 0.98950 0.94940 1.64841 1.27107 1.27346 1.06775 1.22561 1.01168 0.95116 0.94311 0.93752 0.91347 0.91712 0.75811 0.94128 0.90108 0.76969 0.94695 0.90906 0.93842 0.94106 0.88294 0.87008 0.90643 0.91564 0.89720 0.89312 0.91774 0.90937 0.90489 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.36 71.98 0.60 -2.51 16 2 C 0.08 1.67 3.07 45.06 0.14 1.81 16 3 H 0.08 1.27 7.73 -2.39 -0.02 1.25 16 4 C -0.12 -2.74 3.38 -10.66 -0.04 -2.78 16 5 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 6 C 0.53 16.01 4.75 87.65 0.42 16.42 16 7 O -0.58 -22.29 14.98 -3.04 -0.05 -22.34 16 8 N -0.71 -20.24 5.03 -466.81 -2.35 -22.59 16 9 C 0.22 7.01 5.95 85.63 0.51 7.52 16 10 C -0.27 -9.10 5.46 -20.24 -0.11 -9.21 16 11 C 0.07 1.98 11.97 85.26 1.02 3.00 16 12 N -0.33 -11.12 12.61 -56.79 -0.72 -11.84 16 13 N -0.37 -13.35 4.03 -334.04 -1.35 -14.70 16 14 C 0.10 3.70 6.71 41.30 0.28 3.98 16 15 C 0.25 11.50 5.09 85.55 0.44 11.93 16 16 N -0.62 -28.59 3.01 -701.13 -2.11 -30.70 16 17 C -0.27 -13.70 9.67 84.03 0.81 -12.89 16 18 H 0.08 3.80 7.86 -2.91 -0.02 3.77 16 19 C -0.04 -2.21 5.07 84.86 0.43 -1.78 16 20 N -0.93 -51.87 10.94 21.65 0.24 -51.63 16 21 Si 0.97 43.22 29.57 68.60 2.03 45.25 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 C 0.13 4.59 6.49 86.35 0.56 5.15 16 26 C 0.12 3.71 7.44 86.45 0.64 4.35 16 27 C -0.12 -2.72 6.56 31.80 0.21 -2.51 16 28 C 0.04 0.78 6.58 86.56 0.57 1.35 16 29 N -0.54 -10.74 5.20 -882.76 -4.59 -15.33 16 30 C 0.02 0.24 9.42 127.69 1.20 1.44 16 31 H 0.04 1.25 7.02 -2.39 -0.02 1.23 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.36 7.09 -2.39 -0.02 1.34 16 34 H 0.41 10.18 8.46 -92.71 -0.78 9.39 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.21 4.48 8.06 -2.91 -0.02 4.45 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 3.89 6.43 -2.39 -0.02 3.87 16 40 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.10 3.20 7.94 -2.39 -0.02 3.18 16 43 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.07 1.98 6.89 -2.39 -0.02 1.97 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.06 0.96 7.98 -2.39 -0.02 0.94 16 49 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.04 0.46 8.02 -2.38 -0.02 0.44 16 Total: -1.00 -67.17 402.18 -1.07 -68.25 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.14 Total: 30.36 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: 7.68 Total: 25.28 kcal Atomic # 7 Polarization: -135.91 SS G_CDS: -10.88 Total: -146.79 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.05 Total: -22.34 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -67.17 -1.07 -68.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069861743.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.666 kcal (2) G-P(sol) polarization free energy of solvation -67.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds