Wall clock time and date at job start Wed Apr 1 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47010 * 2 1 4 4 C 1.52994 * 109.46916 * 120.00070 * 2 1 3 5 5 C 1.53000 * 109.47265 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46923 * 300.00078 * 5 4 2 7 7 H 1.09004 * 109.46567 * 299.99630 * 6 5 4 8 8 C 1.50695 * 109.46876 * 179.97438 * 6 5 4 9 9 O 1.21283 * 119.99791 * 239.99740 * 8 6 5 10 10 N 1.34783 * 120.00227 * 59.99956 * 8 6 5 11 11 C 1.46502 * 119.99989 * 180.02562 * 10 8 6 12 12 H 1.09000 * 110.88593 * 37.42166 * 11 10 8 13 13 C 1.54914 * 111.00105 * 273.54475 * 11 10 8 14 14 N 1.47426 * 104.82992 * 204.88119 * 13 11 10 15 15 C 1.36936 * 125.64483 * 204.16378 * 14 13 11 16 16 H 1.08004 * 119.99836 * 179.97438 * 15 14 13 17 17 C 1.38815 * 120.00358 * 359.95842 * 15 14 13 18 18 N 1.31619 * 119.99732 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00198 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46852 * 89.99788 * 19 17 15 21 21 H 1.48497 * 109.47226 * 209.99639 * 19 17 15 22 22 H 1.48500 * 109.46864 * 330.00142 * 19 17 15 23 23 C 1.47018 * 108.70517 * 24.12623 * 14 13 11 24 24 C 1.54325 * 107.40412 * 358.86539 * 23 14 13 25 25 H 1.09002 * 110.72265 * 219.52294 * 24 23 14 26 26 N 1.46501 * 110.72113 * 96.24493 * 24 23 14 27 27 C 1.35314 * 125.86617 * 326.17105 * 26 24 23 28 28 C 1.35350 * 106.17245 * 179.90506 * 27 26 24 29 29 N 1.33771 * 106.49727 * 0.35197 * 28 27 26 30 30 N 1.28635 * 108.88450 * 359.77411 * 29 28 27 31 31 C 1.52994 * 109.47214 * 59.99891 * 6 5 4 32 32 C 1.52998 * 109.46916 * 299.99773 * 31 6 5 33 33 H 1.08997 * 109.47689 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47190 * 300.00342 * 1 2 3 35 35 H 1.09002 * 109.47583 * 60.00131 * 1 2 3 36 36 H 1.09006 * 109.47353 * 299.99955 * 4 2 1 37 37 H 1.09006 * 109.47430 * 59.99939 * 4 2 1 38 38 H 1.08999 * 109.47534 * 180.02562 * 5 4 2 39 39 H 1.09006 * 109.46843 * 59.99706 * 5 4 2 40 40 H 0.96999 * 119.99919 * 359.97438 * 10 8 6 41 41 H 1.08999 * 110.37121 * 86.03854 * 13 11 10 42 42 H 1.09001 * 110.45739 * 323.76466 * 13 11 10 43 43 H 0.96996 * 119.99954 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.88241 * 118.36067 * 23 14 13 45 45 H 1.09000 * 109.88049 * 239.37196 * 23 14 13 46 46 H 1.08001 * 126.91198 * 0.02562 * 27 26 24 47 47 H 1.08003 * 126.75381 * 180.12968 * 28 27 26 48 48 H 1.08993 * 109.47338 * 59.99642 * 31 6 5 49 49 H 1.08998 * 109.47086 * 180.02562 * 31 6 5 50 50 H 1.08999 * 109.47184 * 179.97438 * 32 31 6 51 51 H 1.08997 * 109.47689 * 300.00272 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5699 -0.7218 1.2490 6 6 4.0794 -1.4435 -0.0003 7 1 3.7156 -2.4710 0.0000 8 6 5.5864 -1.4435 -0.0009 9 8 6.1924 -0.9187 -0.9109 10 7 6.2607 -2.0269 1.0099 11 6 7.7257 -2.0264 1.0096 12 1 8.1139 -1.0860 0.6185 13 6 8.2811 -3.2316 0.2104 14 7 9.6235 -3.4699 0.7712 15 6 10.6607 -4.0869 0.1242 16 1 11.6099 -4.2137 0.6237 17 6 10.4922 -4.5498 -1.1736 18 7 9.3356 -4.3952 -1.7824 19 14 11.9073 -5.3909 -2.0565 20 1 11.8566 -6.8516 -1.7936 21 1 11.7948 -5.1466 -3.5169 22 1 13.1955 -4.8432 -1.5607 23 6 9.6645 -2.9346 2.1399 24 6 8.2848 -2.3080 2.4320 25 1 8.3934 -1.3819 2.9965 26 7 7.4263 -3.2553 3.1475 27 6 7.4212 -4.5987 2.9861 28 6 6.4848 -5.0773 3.8382 29 7 5.9642 -4.0165 4.4652 30 7 6.5434 -2.9521 4.0336 31 6 3.5695 -0.7222 -1.2495 32 6 2.0395 -0.7217 -1.2492 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 -0.3634 0.5138 -0.8900 36 1 1.6766 -0.2074 2.1393 37 1 1.6766 -1.7490 1.2492 38 1 3.9333 -1.2361 2.1387 39 1 3.9336 0.3057 1.2487 40 1 5.7759 -2.4464 1.7379 41 1 8.3509 -2.9847 -0.8490 42 1 7.6489 -4.1079 0.3540 43 1 9.2177 -4.7189 -2.6891 44 1 9.8631 -3.7399 2.8471 45 1 10.4411 -2.1736 2.2172 46 1 8.0411 -5.1736 2.3140 47 1 6.2093 -6.1118 3.9810 48 1 3.9331 0.3052 -1.2498 49 1 3.9321 -1.2366 -2.1395 50 1 1.6761 -0.2075 -2.1390 51 1 1.6757 -1.7492 -1.2490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070079578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:08 Heat of formation + Delta-G solvation = 75.423447 kcal Electronic energy + Delta-G solvation = -32317.347224 eV Core-core repulsion = 28254.063801 eV Total energy + Delta-G solvation = -4063.283423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.08139 -40.12910 -38.51418 -37.44527 -34.23115 -33.52624 -32.78540 -31.74956 -30.83194 -30.68914 -28.92241 -27.82872 -26.69316 -24.92241 -22.90885 -22.72914 -22.40240 -22.14650 -20.63651 -20.20809 -19.96091 -19.65382 -17.80547 -17.19229 -16.90423 -15.79955 -15.67274 -15.25532 -15.01471 -14.68815 -14.40817 -14.34958 -14.20942 -14.03783 -13.83230 -13.45173 -13.30582 -13.09367 -12.74890 -12.55139 -12.41482 -12.36924 -12.23651 -11.85854 -11.61932 -11.49166 -11.36989 -11.20364 -11.04013 -11.03807 -10.83989 -10.77171 -10.72793 -10.49703 -10.43531 -10.20408 -10.11201 -9.98834 -9.83653 -9.40706 -9.10594 -8.85337 -8.66743 -7.13991 -5.84288 -3.31288 1.86075 2.53268 2.80355 2.93407 3.29938 3.34535 3.37645 3.38318 4.29433 4.49912 4.52240 4.57525 4.63089 4.66812 4.87229 4.96387 4.98181 5.05746 5.11164 5.27765 5.31194 5.35609 5.40031 5.40721 5.43396 5.48900 5.50316 5.54716 5.63943 5.71281 5.75478 5.76844 5.84557 5.94115 5.99048 6.05553 6.06471 6.12187 6.12863 6.14138 6.17682 6.28277 6.39038 6.39915 6.61806 6.91023 7.14799 7.39032 7.63609 7.74423 8.11875 8.51413 8.73965 8.97186 9.57860 10.15430 11.18427 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010920 B = 0.003534 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.467432 B = 7920.111673 C = 9742.045748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.104 4.104 7 H 0.093 0.907 8 C 0.519 3.481 9 O -0.530 6.530 10 N -0.719 5.719 11 C 0.112 3.888 12 H 0.112 0.888 13 C 0.145 3.855 14 N -0.598 5.598 15 C -0.237 4.237 16 H 0.082 0.918 17 C -0.001 4.001 18 N -0.913 5.913 19 Si 0.918 3.082 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.129 3.871 24 C 0.117 3.883 25 H 0.121 0.879 26 N -0.276 5.276 27 C -0.017 4.017 28 C -0.069 4.069 29 N -0.277 5.277 30 N -0.103 5.103 31 C -0.098 4.098 32 C -0.114 4.114 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.394 0.606 41 H 0.123 0.877 42 H 0.021 0.979 43 H 0.256 0.744 44 H 0.041 0.959 45 H 0.055 0.945 46 H 0.194 0.806 47 H 0.186 0.814 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.065 5.327 6.318 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.126 4.126 7 H 0.111 0.889 8 C 0.305 3.695 9 O -0.405 6.405 10 N -0.371 5.371 11 C 0.004 3.996 12 H 0.130 0.870 13 C 0.019 3.981 14 N -0.326 5.326 15 C -0.364 4.364 16 H 0.100 0.900 17 C -0.198 4.198 18 N -0.560 5.560 19 Si 0.748 3.252 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.002 3.998 24 C 0.014 3.986 25 H 0.139 0.861 26 N -0.069 5.069 27 C -0.168 4.168 28 C -0.226 4.226 29 N -0.143 5.143 30 N -0.082 5.082 31 C -0.136 4.136 32 C -0.151 4.151 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.229 0.771 41 H 0.140 0.860 42 H 0.039 0.961 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.211 0.789 47 H 0.203 0.797 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.232 6.780 6.224 16.118 hybrid contribution 1.171 -1.678 -0.679 2.156 sum -12.061 5.102 5.545 14.221 Atomic orbital electron populations 1.21829 0.95388 1.01739 1.01467 1.21177 0.95245 0.99803 0.95094 0.91176 1.21574 0.94700 1.00931 0.97628 1.21521 0.96101 1.00977 0.96180 1.21338 0.91527 1.01938 0.97778 0.88857 1.20576 0.89799 0.77644 0.81522 1.90726 1.70210 1.44632 1.34947 1.45840 1.06611 1.59038 1.25580 1.23068 0.79746 1.03907 0.92847 0.87039 1.22413 0.84090 0.90734 1.00882 1.44404 1.10614 1.68704 1.08852 1.19003 0.90910 1.30713 0.95817 0.89996 1.24840 0.97331 1.00707 0.96970 1.69754 1.22334 1.50422 1.13444 0.86033 0.81001 0.79128 0.79029 1.21442 1.21490 1.20537 1.21647 0.90760 0.97235 0.90149 1.23259 0.90921 0.91421 0.93043 0.86138 1.47443 1.26047 1.06993 1.26459 1.23918 1.03975 0.84658 1.04265 1.23540 0.99474 1.00257 0.99297 1.75037 1.21731 0.95626 1.21911 1.78246 1.03032 1.21663 1.05257 1.21328 0.94525 1.01268 0.96480 1.21624 0.95356 1.00694 0.97454 0.92729 0.92837 0.92804 0.91682 0.91760 0.91462 0.91391 0.77064 0.85985 0.96122 0.93284 0.94171 0.92761 0.78905 0.79719 0.91226 0.91003 0.91744 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.76 16 2 C -0.09 -0.84 2.72 -90.62 -0.25 -1.08 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 5 C -0.11 -1.21 5.10 -26.73 -0.14 -1.35 16 6 C -0.10 -1.35 2.53 -91.77 -0.23 -1.58 16 7 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 8 C 0.52 8.74 7.15 -10.98 -0.08 8.66 16 9 O -0.53 -10.97 15.73 5.55 0.09 -10.88 16 10 N -0.72 -11.73 5.07 -51.59 -0.26 -11.99 16 11 C 0.11 2.00 3.18 -65.64 -0.21 1.79 16 12 H 0.11 2.11 7.73 -51.93 -0.40 1.71 16 13 C 0.14 3.20 5.06 -2.53 -0.01 3.19 16 14 N -0.60 -13.37 3.39 -170.07 -0.58 -13.95 16 15 C -0.24 -5.96 10.27 -15.06 -0.15 -6.11 16 16 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 17 C 0.00 -0.04 5.49 -17.43 -0.10 -0.13 16 18 N -0.91 -25.21 10.09 55.49 0.56 -24.65 16 19 Si 0.92 20.87 29.55 -169.99 -5.02 15.85 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 C 0.13 2.28 6.32 -3.07 -0.02 2.26 16 24 C 0.12 1.82 3.99 -65.96 -0.26 1.56 16 25 H 0.12 1.62 8.14 -51.93 -0.42 1.19 16 26 N -0.28 -4.31 2.27 -52.85 -0.12 -4.43 16 27 C -0.02 -0.26 9.25 -17.05 -0.16 -0.42 16 28 C -0.07 -0.98 12.05 -17.74 -0.21 -1.20 16 29 N -0.28 -4.47 12.41 30.24 0.38 -4.10 16 30 N -0.10 -1.67 12.49 60.35 0.75 -0.91 16 31 C -0.10 -1.21 4.49 -26.73 -0.12 -1.33 16 32 C -0.11 -1.10 5.20 -26.73 -0.14 -1.24 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.77 7.56 -51.93 -0.39 0.38 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.39 6.12 6.36 -40.82 -0.26 5.86 16 41 H 0.12 3.28 5.87 -51.93 -0.30 2.98 16 42 H 0.02 0.49 7.15 -51.93 -0.37 0.12 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.04 0.70 7.43 -51.93 -0.39 0.32 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.19 3.19 7.56 -52.49 -0.40 2.80 16 47 H 0.19 2.04 8.06 -52.48 -0.42 1.61 16 48 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 49 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 50 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 397.29 15.07 5.99 5.99 Total: -1.00 -29.24 397.29 -8.49 -37.73 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -8.40 Total: 10.27 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.88 Total: 1.09 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.73 Total: -60.04 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.24 -8.49 -37.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070079578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.151 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds