Wall clock time and date at job start Wed Apr 1 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47010 * 2 1 4 4 C 1.52994 * 109.46916 * 120.00070 * 2 1 3 5 5 C 1.53000 * 109.47265 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46923 * 300.00078 * 5 4 2 7 7 H 1.09004 * 109.46567 * 299.99630 * 6 5 4 8 8 C 1.50695 * 109.46876 * 179.97438 * 6 5 4 9 9 O 1.21283 * 119.99791 * 239.99740 * 8 6 5 10 10 N 1.34783 * 120.00227 * 59.99956 * 8 6 5 11 11 C 1.46502 * 119.99989 * 180.02562 * 10 8 6 12 12 H 1.09000 * 110.88593 * 37.42166 * 11 10 8 13 13 C 1.54914 * 111.00105 * 273.54475 * 11 10 8 14 14 N 1.47426 * 104.82992 * 204.88119 * 13 11 10 15 15 C 1.36936 * 125.64483 * 204.16378 * 14 13 11 16 16 H 1.08004 * 119.99836 * 179.97438 * 15 14 13 17 17 C 1.38815 * 120.00358 * 359.95842 * 15 14 13 18 18 N 1.31619 * 119.99732 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00198 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46852 * 89.99788 * 19 17 15 21 21 H 1.48497 * 109.47226 * 209.99639 * 19 17 15 22 22 H 1.48500 * 109.46864 * 330.00142 * 19 17 15 23 23 C 1.47018 * 108.70517 * 24.12623 * 14 13 11 24 24 C 1.54325 * 107.40412 * 358.86539 * 23 14 13 25 25 H 1.09002 * 110.72265 * 219.52294 * 24 23 14 26 26 N 1.46501 * 110.72113 * 96.24493 * 24 23 14 27 27 C 1.35314 * 125.86617 * 326.17105 * 26 24 23 28 28 C 1.35350 * 106.17245 * 179.90506 * 27 26 24 29 29 N 1.33771 * 106.49727 * 0.35197 * 28 27 26 30 30 N 1.28635 * 108.88450 * 359.77411 * 29 28 27 31 31 C 1.52994 * 109.47214 * 59.99891 * 6 5 4 32 32 C 1.52998 * 109.46916 * 299.99773 * 31 6 5 33 33 H 1.08997 * 109.47689 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47190 * 300.00342 * 1 2 3 35 35 H 1.09002 * 109.47583 * 60.00131 * 1 2 3 36 36 H 1.09006 * 109.47353 * 299.99955 * 4 2 1 37 37 H 1.09006 * 109.47430 * 59.99939 * 4 2 1 38 38 H 1.08999 * 109.47534 * 180.02562 * 5 4 2 39 39 H 1.09006 * 109.46843 * 59.99706 * 5 4 2 40 40 H 0.96999 * 119.99919 * 359.97438 * 10 8 6 41 41 H 1.08999 * 110.37121 * 86.03854 * 13 11 10 42 42 H 1.09001 * 110.45739 * 323.76466 * 13 11 10 43 43 H 0.96996 * 119.99954 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.88241 * 118.36067 * 23 14 13 45 45 H 1.09000 * 109.88049 * 239.37196 * 23 14 13 46 46 H 1.08001 * 126.91198 * 0.02562 * 27 26 24 47 47 H 1.08003 * 126.75381 * 180.12968 * 28 27 26 48 48 H 1.08993 * 109.47338 * 59.99642 * 31 6 5 49 49 H 1.08998 * 109.47086 * 180.02562 * 31 6 5 50 50 H 1.08999 * 109.47184 * 179.97438 * 32 31 6 51 51 H 1.08997 * 109.47689 * 300.00272 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5699 -0.7218 1.2490 6 6 4.0794 -1.4435 -0.0003 7 1 3.7156 -2.4710 0.0000 8 6 5.5864 -1.4435 -0.0009 9 8 6.1924 -0.9187 -0.9109 10 7 6.2607 -2.0269 1.0099 11 6 7.7257 -2.0264 1.0096 12 1 8.1139 -1.0860 0.6185 13 6 8.2811 -3.2316 0.2104 14 7 9.6235 -3.4699 0.7712 15 6 10.6607 -4.0869 0.1242 16 1 11.6099 -4.2137 0.6237 17 6 10.4922 -4.5498 -1.1736 18 7 9.3356 -4.3952 -1.7824 19 14 11.9073 -5.3909 -2.0565 20 1 11.8566 -6.8516 -1.7936 21 1 11.7948 -5.1466 -3.5169 22 1 13.1955 -4.8432 -1.5607 23 6 9.6645 -2.9346 2.1399 24 6 8.2848 -2.3080 2.4320 25 1 8.3934 -1.3819 2.9965 26 7 7.4263 -3.2553 3.1475 27 6 7.4212 -4.5987 2.9861 28 6 6.4848 -5.0773 3.8382 29 7 5.9642 -4.0165 4.4652 30 7 6.5434 -2.9521 4.0336 31 6 3.5695 -0.7222 -1.2495 32 6 2.0395 -0.7217 -1.2492 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 -0.3634 0.5138 -0.8900 36 1 1.6766 -0.2074 2.1393 37 1 1.6766 -1.7490 1.2492 38 1 3.9333 -1.2361 2.1387 39 1 3.9336 0.3057 1.2487 40 1 5.7759 -2.4464 1.7379 41 1 8.3509 -2.9847 -0.8490 42 1 7.6489 -4.1079 0.3540 43 1 9.2177 -4.7189 -2.6891 44 1 9.8631 -3.7399 2.8471 45 1 10.4411 -2.1736 2.2172 46 1 8.0411 -5.1736 2.3140 47 1 6.2093 -6.1118 3.9810 48 1 3.9331 0.3052 -1.2498 49 1 3.9321 -1.2366 -2.1395 50 1 1.6761 -0.2075 -2.1390 51 1 1.6757 -1.7492 -1.2490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070079578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:07 Heat of formation + Delta-G solvation = 58.255013 kcal Electronic energy + Delta-G solvation = -32318.091703 eV Core-core repulsion = 28254.063801 eV Total energy + Delta-G solvation = -4064.027902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.32985 -41.41398 -39.79145 -38.69599 -35.87176 -34.92903 -33.75428 -33.39868 -31.93367 -31.71879 -30.49663 -29.28423 -27.73844 -26.60138 -24.19683 -23.69613 -23.59259 -23.34532 -22.07363 -21.55499 -21.18268 -20.65730 -19.32619 -18.60735 -18.42880 -17.22554 -16.93144 -16.57849 -16.45997 -16.02238 -15.72096 -15.47325 -15.22682 -15.16979 -15.07691 -14.77557 -14.56676 -14.46455 -14.08354 -13.94559 -13.56910 -13.34952 -13.20580 -13.15022 -13.08945 -12.83001 -12.75596 -12.43010 -12.34161 -12.29130 -12.11071 -12.04258 -11.93730 -11.92628 -11.81655 -11.60915 -11.28522 -11.16538 -10.95437 -10.78954 -10.74503 -10.31845 -10.17455 -9.01379 -7.81578 -5.29183 0.59219 1.25123 1.47904 1.49083 1.55908 1.57557 1.61282 2.00652 2.46090 3.16476 3.30047 3.34495 3.46852 3.57512 3.66105 3.69318 3.72839 3.89446 4.07411 4.13319 4.15625 4.19516 4.29884 4.31079 4.36661 4.37527 4.47498 4.53862 4.61508 4.68513 4.75922 4.77975 4.83083 4.90604 5.00767 5.02629 5.09093 5.11558 5.18234 5.23655 5.26213 5.29653 5.39937 5.42640 5.44336 5.46858 5.60105 5.63012 5.71233 6.19450 6.36905 6.99918 7.14512 7.50083 7.67627 8.26008 9.18889 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010920 B = 0.003534 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.467432 B = 7920.111673 C = 9742.045748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.107 4.107 5 C -0.103 4.103 6 C -0.097 4.097 7 H 0.102 0.898 8 C 0.513 3.487 9 O -0.574 6.574 10 N -0.709 5.709 11 C 0.122 3.878 12 H 0.102 0.898 13 C 0.160 3.840 14 N -0.614 5.614 15 C -0.235 4.235 16 H 0.092 0.908 17 C -0.060 4.060 18 N -0.945 5.945 19 Si 0.978 3.022 20 H -0.286 1.286 21 H -0.302 1.302 22 H -0.267 1.267 23 C 0.129 3.871 24 C 0.133 3.867 25 H 0.154 0.846 26 N -0.276 5.276 27 C -0.030 4.030 28 C -0.054 4.054 29 N -0.289 5.289 30 N -0.106 5.106 31 C -0.096 4.096 32 C -0.108 4.108 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.402 0.598 41 H 0.072 0.928 42 H 0.000 1.000 43 H 0.245 0.755 44 H 0.050 0.950 45 H 0.074 0.926 46 H 0.181 0.819 47 H 0.218 0.782 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.072 0.928 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.126 5.467 8.630 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.144 4.144 5 C -0.141 4.141 6 C -0.118 4.118 7 H 0.120 0.880 8 C 0.301 3.699 9 O -0.452 6.452 10 N -0.361 5.361 11 C 0.014 3.986 12 H 0.119 0.881 13 C 0.034 3.966 14 N -0.342 5.342 15 C -0.364 4.364 16 H 0.110 0.890 17 C -0.253 4.253 18 N -0.593 5.593 19 Si 0.806 3.194 20 H -0.212 1.212 21 H -0.229 1.229 22 H -0.191 1.191 23 C 0.003 3.997 24 C 0.030 3.970 25 H 0.172 0.828 26 N -0.070 5.070 27 C -0.181 4.181 28 C -0.211 4.211 29 N -0.155 5.155 30 N -0.085 5.085 31 C -0.134 4.134 32 C -0.145 4.145 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.238 0.762 41 H 0.090 0.910 42 H 0.018 0.982 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.198 0.802 47 H 0.234 0.766 48 H 0.076 0.924 49 H 0.068 0.932 50 H 0.091 0.909 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.299 6.920 8.605 18.066 hybrid contribution 1.522 -1.739 -1.357 2.680 sum -12.777 5.182 7.248 15.576 Atomic orbital electron populations 1.21792 0.93970 1.02174 1.02133 1.21163 0.96349 0.99392 0.94232 0.91422 1.21570 0.92867 1.01566 0.98399 1.21486 0.97661 1.00269 0.94654 1.21379 0.88330 1.02877 0.99263 0.87986 1.21389 0.91496 0.76465 0.80574 1.90706 1.71457 1.46561 1.36524 1.45769 1.05932 1.58708 1.25706 1.22674 0.80693 1.01338 0.93939 0.88063 1.21930 0.84348 0.91482 0.98870 1.44537 1.10023 1.68705 1.10899 1.19392 0.91818 1.29341 0.95823 0.88984 1.25602 0.99313 1.02296 0.98094 1.70047 1.24184 1.52059 1.13034 0.85091 0.79055 0.78153 0.77069 1.21250 1.22865 1.19136 1.21798 0.92473 0.97825 0.87623 1.23131 0.89445 0.92493 0.91912 0.82835 1.47411 1.26124 1.06960 1.26477 1.23891 1.04683 0.84727 1.04788 1.24027 0.98012 1.01301 0.97719 1.75048 1.22056 0.96050 1.22365 1.78243 1.03050 1.21873 1.05294 1.21297 0.96698 1.00097 0.95288 1.21597 0.92875 1.01449 0.98591 0.92399 0.92036 0.92355 0.90299 0.91210 0.91600 0.91783 0.76226 0.90971 0.98184 0.94529 0.93213 0.90829 0.80159 0.76576 0.92366 0.93195 0.90901 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.19 71.98 0.66 -1.12 16 2 C -0.09 -1.45 2.72 -10.79 -0.03 -1.48 16 3 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.11 -1.71 5.20 30.59 0.16 -1.55 16 5 C -0.10 -2.13 5.10 30.60 0.16 -1.97 16 6 C -0.10 -2.50 2.53 -11.54 -0.03 -2.53 16 7 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 8 C 0.51 17.77 7.15 87.65 0.63 18.39 16 9 O -0.57 -25.04 15.73 -3.04 -0.05 -25.08 16 10 N -0.71 -23.30 5.07 -435.53 -2.21 -25.51 16 11 C 0.12 4.40 3.18 46.47 0.15 4.55 16 12 H 0.10 3.93 7.73 -2.39 -0.02 3.91 16 13 C 0.16 7.37 5.06 86.86 0.44 7.81 16 14 N -0.61 -27.70 3.39 -691.97 -2.35 -30.05 16 15 C -0.24 -11.90 10.27 84.03 0.86 -11.03 16 16 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 17 C -0.06 -3.20 5.49 84.86 0.47 -2.73 16 18 N -0.94 -54.68 10.09 21.65 0.22 -54.46 16 19 Si 0.98 43.70 29.55 68.60 2.03 45.73 16 20 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 23 C 0.13 4.35 6.32 86.73 0.55 4.90 16 24 C 0.13 3.94 3.99 46.27 0.18 4.13 16 25 H 0.15 3.64 8.14 -2.39 -0.02 3.62 16 26 N -0.28 -8.13 2.27 -321.12 -0.73 -8.86 16 27 C -0.03 -0.88 9.25 83.49 0.77 -0.11 16 28 C -0.05 -1.42 12.05 83.73 1.01 -0.41 16 29 N -0.29 -8.62 12.41 -58.26 -0.72 -9.35 16 30 N -0.11 -3.18 12.49 37.02 0.46 -2.72 16 31 C -0.10 -2.40 4.49 30.59 0.14 -2.27 16 32 C -0.11 -1.95 5.20 30.60 0.16 -1.79 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.07 1.39 7.56 -2.39 -0.02 1.37 16 39 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.40 12.15 6.36 -92.71 -0.59 11.56 16 41 H 0.07 4.13 5.87 -2.39 -0.01 4.11 16 42 H 0.00 0.01 7.15 -2.39 -0.02 0.00 16 43 H 0.24 14.12 8.31 -92.71 -0.77 13.34 16 44 H 0.05 1.64 7.43 -2.39 -0.02 1.62 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 46 H 0.18 5.92 7.56 -2.91 -0.02 5.90 16 47 H 0.22 4.08 8.06 -2.91 -0.02 4.05 16 48 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 49 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 50 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -65.95 397.29 3.26 -62.69 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.34 Total: 34.82 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 6.27 Total: 12.79 kcal Atomic # 7 Polarization: -125.62 SS G_CDS: -5.33 Total: -130.95 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.05 Total: -25.08 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -65.95 3.26 -62.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070079578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.942 kcal (2) G-P(sol) polarization free energy of solvation -65.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds