Wall clock time and date at job start Wed Apr 1 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.58658 * 2 1 4 4 C 1.53185 * 109.58524 * 239.57137 * 2 1 3 5 5 C 1.53041 * 109.31102 * 185.58098 * 4 2 1 6 6 C 1.53042 * 109.54250 * 61.36349 * 5 4 2 7 7 H 1.08997 * 109.49796 * 178.68317 * 6 5 4 8 8 N 1.46506 * 109.49443 * 58.58846 * 6 5 4 9 9 C 1.34772 * 119.99812 * 155.16665 * 8 6 5 10 10 O 1.21276 * 120.00153 * 359.97438 * 9 8 6 11 11 C 1.50707 * 119.99620 * 179.97438 * 9 8 6 12 12 C 1.50700 * 109.46791 * 179.97438 * 11 9 8 13 13 N 1.30834 * 125.96091 * 269.68842 * 12 11 9 14 14 C 1.33248 * 109.82672 * 179.86743 * 13 12 11 15 15 C 1.50699 * 125.52499 * 180.20325 * 14 13 12 16 16 C 1.53004 * 117.49373 * 188.88292 * 15 14 13 17 17 C 1.53000 * 117.49929 * 120.26207 * 15 14 13 18 18 N 1.30718 * 108.94624 * 0.40266 * 14 13 12 19 19 N 1.34430 * 125.96197 * 90.00157 * 12 11 9 20 20 C 1.46501 * 126.81821 * 0.02562 * 19 12 11 21 21 C 1.53194 * 109.31045 * 298.63989 * 6 5 4 22 22 N 1.46919 * 108.77627 * 54.62952 * 21 6 5 23 23 C 1.36944 * 120.62763 * 126.37172 * 22 21 6 24 24 H 1.08007 * 119.99481 * 209.86937 * 23 22 21 25 25 C 1.38805 * 120.00306 * 29.86754 * 23 22 21 26 26 N 1.31625 * 119.99823 * 15.29323 * 25 23 22 27 27 Si 1.86795 * 120.00427 * 195.29079 * 25 23 22 28 28 H 1.48503 * 109.47133 * 94.60620 * 27 25 23 29 29 H 1.48504 * 109.47481 * 214.60934 * 27 25 23 30 30 H 1.48500 * 109.46870 * 334.60859 * 27 25 23 31 31 H 1.09001 * 109.47342 * 299.71824 * 1 2 3 32 32 H 1.09003 * 109.46751 * 59.71754 * 1 2 3 33 33 H 1.08996 * 109.47130 * 179.71445 * 1 2 3 34 34 H 1.09002 * 109.50011 * 305.52839 * 4 2 1 35 35 H 1.09003 * 109.50312 * 65.63158 * 4 2 1 36 36 H 1.08997 * 109.45989 * 301.34270 * 5 4 2 37 37 H 1.09004 * 109.46253 * 181.38698 * 5 4 2 38 38 H 0.97005 * 120.00026 * 335.16119 * 8 6 5 39 39 H 1.09000 * 109.47153 * 299.99677 * 11 9 8 40 40 H 1.08998 * 109.46660 * 59.99889 * 11 9 8 41 41 H 1.09001 * 115.54776 * 334.58616 * 15 14 13 42 42 H 1.08990 * 117.50054 * 359.97438 * 16 15 14 43 43 H 1.09002 * 117.49314 * 145.02229 * 16 15 14 44 44 H 1.08994 * 117.49810 * 214.97621 * 17 15 14 45 45 H 1.09004 * 117.49728 * 359.97438 * 17 15 14 46 46 H 1.09001 * 109.47358 * 90.00324 * 20 19 12 47 47 H 1.09004 * 109.46818 * 209.99648 * 20 19 12 48 48 H 1.08999 * 109.47542 * 330.00044 * 20 19 12 49 49 H 1.09000 * 109.58450 * 174.41902 * 21 6 5 50 50 H 1.09000 * 109.58392 * 294.83898 * 21 6 5 51 51 H 0.96998 * 120.00085 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2444 5 6 3.5675 -0.8495 -1.1690 6 6 3.9569 -1.6657 0.0657 7 1 5.0412 -1.7695 0.1060 8 7 3.3405 -2.9925 -0.0109 9 6 3.8952 -4.0320 0.6434 10 8 4.9048 -3.8691 1.2953 11 6 3.2607 -5.3968 0.5650 12 6 4.0701 -6.3743 1.3776 13 7 5.0655 -7.1005 0.9375 14 6 5.5511 -7.8490 1.9271 15 6 6.7037 -8.8130 1.8115 16 6 6.9787 -9.7315 3.0038 17 6 7.9231 -8.5662 2.7019 18 7 4.8628 -7.6148 3.0135 19 7 3.8917 -6.6567 2.6797 20 6 2.8835 -6.0804 3.5729 21 6 3.4650 -0.9453 1.3250 22 7 2.0226 -0.6980 1.1954 23 6 1.1536 -1.1107 2.1700 24 1 0.1398 -1.3787 1.9113 25 6 1.5757 -1.1847 3.4903 26 7 2.6882 -0.5863 3.8600 27 14 0.5650 -2.1334 4.7423 28 1 1.0926 -3.5166 4.8587 29 1 0.6510 -1.4580 6.0621 30 1 -0.8523 -2.1797 4.3015 31 1 -0.3634 0.5094 0.8925 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3633 -1.0276 -0.0051 34 1 1.6030 -1.7270 -1.2891 35 1 1.7661 -0.1695 -2.1366 36 1 4.0061 0.1459 -1.0994 37 1 3.9378 -1.3475 -2.0651 38 1 2.5331 -3.1229 -0.5326 39 1 2.2457 -5.3488 0.9593 40 1 3.2318 -5.7248 -0.4740 41 1 6.8818 -9.2153 0.8142 42 1 6.3263 -9.6382 3.8719 43 1 7.3378 -10.7384 2.7910 44 1 8.9035 -8.8064 2.2907 45 1 7.8918 -7.7063 3.3711 46 1 1.9799 -6.6892 3.5419 47 1 3.2712 -6.0573 4.5915 48 1 2.6494 -5.0659 3.2502 49 1 3.6517 -1.5690 2.1992 50 1 3.9903 0.0038 1.4318 51 1 2.9830 -0.6376 4.7827 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072095306.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:23 Heat of formation + Delta-G solvation = 98.621593 kcal Electronic energy + Delta-G solvation = -32110.066813 eV Core-core repulsion = 28047.789338 eV Total energy + Delta-G solvation = -4062.277476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.04503 -39.52850 -37.69449 -37.20275 -34.17908 -33.74231 -32.80865 -32.51995 -30.77610 -29.96593 -28.64580 -27.15849 -26.14558 -24.99225 -23.69205 -22.48336 -22.24346 -21.67025 -20.49234 -20.10484 -19.65151 -18.79485 -17.19344 -16.93479 -16.34903 -15.68881 -15.62131 -15.29707 -15.18463 -14.80032 -14.46727 -14.09617 -13.95601 -13.65371 -13.44260 -13.32547 -13.16934 -12.99526 -12.90764 -12.53726 -12.23268 -12.13000 -11.88430 -11.65694 -11.46613 -11.28383 -11.21669 -11.02692 -10.94045 -10.89870 -10.81033 -10.60862 -10.44714 -10.38963 -10.03058 -9.83000 -9.69455 -9.57937 -9.51030 -9.37239 -9.03605 -8.53419 -8.43468 -6.66008 -5.82203 -3.27170 1.68343 2.41636 2.82686 3.05179 3.23716 3.33981 3.37464 3.60530 3.88283 3.99408 4.40481 4.44521 4.57734 4.79550 4.91854 5.03288 5.12721 5.18832 5.23026 5.25463 5.29849 5.33373 5.41647 5.45800 5.53406 5.54929 5.59242 5.64534 5.74985 5.96824 6.04251 6.05672 6.07270 6.11179 6.29027 6.30173 6.40261 6.43084 6.48144 6.56132 6.57183 6.63979 6.84388 6.90193 7.00025 7.07322 7.32990 7.62349 7.76052 8.00148 8.26658 8.42028 8.69024 9.16218 9.80658 10.38169 11.25527 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012395 B = 0.003508 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.430268 B = 7980.012737 C = 9325.949601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.120 3.880 7 H 0.075 0.925 8 N -0.696 5.696 9 C 0.519 3.481 10 O -0.534 6.534 11 C -0.069 4.069 12 C 0.310 3.690 13 N -0.532 5.532 14 C 0.250 3.750 15 C -0.067 4.067 16 C -0.162 4.162 17 C -0.160 4.160 18 N -0.319 5.319 19 N -0.367 5.367 20 C 0.093 3.907 21 C 0.164 3.836 22 N -0.583 5.583 23 C -0.251 4.251 24 H 0.068 0.932 25 C 0.006 3.994 26 N -0.897 5.897 27 Si 0.893 3.107 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.396 0.604 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.025 0.975 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 -11.104 -8.295 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.014 3.986 7 H 0.093 0.907 8 N -0.347 5.347 9 C 0.302 3.698 10 O -0.411 6.411 11 C -0.111 4.111 12 C 0.033 3.967 13 N -0.259 5.259 14 C -0.032 4.032 15 C -0.087 4.087 16 C -0.200 4.200 17 C -0.198 4.198 18 N -0.147 5.147 19 N -0.156 5.156 20 C -0.049 4.049 21 C 0.037 3.963 22 N -0.306 5.306 23 C -0.380 4.380 24 H 0.086 0.914 25 C -0.194 4.194 26 N -0.540 5.540 27 Si 0.723 3.277 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.231 0.769 39 H 0.134 0.866 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.111 0.889 48 H 0.117 0.883 49 H 0.112 0.888 50 H 0.043 0.957 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.073 -11.236 -7.216 13.514 hybrid contribution -1.176 -0.136 0.597 1.325 sum 0.897 -11.372 -6.620 13.189 Atomic orbital electron populations 1.21793 0.96111 1.01159 1.00215 1.20471 0.92873 0.93677 0.87198 0.95788 1.22058 0.95123 1.00661 0.99056 1.21689 0.97009 1.00170 0.96804 1.21785 0.96976 0.81578 0.98244 0.90680 1.45749 1.29491 1.08531 1.50959 1.19817 0.84782 0.85132 0.80045 1.90750 1.24950 1.84726 1.40659 1.20217 0.98610 0.90645 1.01656 1.23281 0.94210 0.95745 0.83510 1.70187 1.11405 1.12078 1.32269 1.22982 0.96762 0.96721 0.86699 1.19995 0.92490 0.98661 0.97601 1.23019 1.02885 0.95202 0.98923 1.23026 0.93963 1.00649 1.02179 1.77876 1.04110 1.09958 1.22790 1.50050 1.25817 1.30992 1.08723 1.22055 0.88683 0.99299 0.94852 1.21147 0.83774 0.97008 0.94379 1.44049 1.02650 1.64920 1.18978 1.19101 0.95025 1.37920 0.85981 0.91401 1.25085 0.97706 0.99611 0.96950 1.69993 1.23796 1.43546 1.16713 0.86433 0.79860 0.79779 0.81617 1.21640 1.21803 1.20396 0.92073 0.94437 0.92982 0.92615 0.92850 0.91134 0.92924 0.76906 0.86588 0.85568 0.85328 0.87930 0.88045 0.87865 0.88479 0.90166 0.88902 0.88276 0.88797 0.95730 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 7.95 37.16 0.30 -1.99 16 2 C 0.16 3.03 3.50 -67.60 -0.24 2.79 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.90 5.21 -26.61 -0.14 -2.04 16 5 C -0.12 -1.76 5.58 -26.69 -0.15 -1.91 16 6 C 0.12 2.16 2.81 -67.81 -0.19 1.97 16 7 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 8 N -0.70 -11.26 4.92 -53.68 -0.26 -11.52 16 9 C 0.52 9.12 7.79 -10.98 -0.09 9.04 16 10 O -0.53 -11.93 15.70 5.56 0.09 -11.84 16 11 C -0.07 -0.94 5.82 -29.03 -0.17 -1.11 16 12 C 0.31 5.23 6.48 -155.69 -1.01 4.22 16 13 N -0.53 -9.51 11.19 -8.16 -0.09 -9.60 16 14 C 0.25 4.22 7.69 -156.84 -1.21 3.01 16 15 C -0.07 -0.85 6.33 -91.77 -0.58 -1.43 16 16 C -0.16 -1.69 10.13 -26.73 -0.27 -1.96 16 17 C -0.16 -1.78 10.23 -26.73 -0.27 -2.05 16 18 N -0.32 -5.61 12.24 32.42 0.40 -5.21 16 19 N -0.37 -6.24 4.04 -65.10 -0.26 -6.50 16 20 C 0.09 1.35 11.16 59.85 0.67 2.02 16 21 C 0.16 3.70 4.88 -3.71 -0.02 3.68 16 22 N -0.58 -12.91 2.90 -164.78 -0.48 -13.39 16 23 C -0.25 -6.13 8.57 -15.06 -0.13 -6.26 16 24 H 0.07 1.62 6.24 -52.48 -0.33 1.29 16 25 C 0.01 0.15 4.94 -17.43 -0.09 0.06 16 26 N -0.90 -25.18 11.22 55.49 0.62 -24.55 16 27 Si 0.89 20.26 29.58 -169.99 -5.03 15.24 16 28 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 31 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.87 7.44 -51.93 -0.39 0.48 16 34 H 0.06 0.78 6.40 -51.93 -0.33 0.44 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.40 5.43 6.77 -40.82 -0.28 5.16 16 39 H 0.12 1.31 7.76 -51.93 -0.40 0.91 16 40 H 0.13 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.10 1.19 7.87 -51.93 -0.41 0.78 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.10 1.56 7.72 -51.93 -0.40 1.15 16 49 H 0.09 2.52 6.14 -51.93 -0.32 2.20 16 50 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 407.89 15.07 6.15 6.15 Total: -1.00 -33.22 407.89 -10.72 -43.95 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -8.27 Total: 9.25 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -3.58 Total: 8.03 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -0.08 Total: -70.78 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.22 -10.72 -43.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072095306.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.569 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds