Wall clock time and date at job start Wed Apr 1 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.46919 * 2 1 4 4 C 1.50696 * 109.47327 * 240.00277 * 2 1 3 5 5 O 1.21280 * 119.99872 * 240.00001 * 4 2 1 6 6 N 1.34780 * 120.00061 * 59.99664 * 4 2 1 7 7 C 1.47575 * 125.62669 * 359.69310 * 6 4 2 8 8 C 1.54347 * 104.66492 * 156.60177 * 7 6 4 9 9 C 1.54387 * 102.37966 * 36.39448 * 8 7 6 10 10 C 1.47083 * 125.62933 * 180.02562 * 6 4 2 11 11 H 1.09007 * 109.87304 * 300.54121 * 10 6 4 12 12 C 1.52994 * 109.87803 * 61.53709 * 10 6 4 13 13 C 1.52104 * 110.59660 * 154.14821 * 8 7 6 14 14 C 1.53342 * 109.44474 * 183.25678 * 13 8 7 15 15 N 1.46929 * 108.68806 * 306.70080 * 14 13 8 16 16 C 1.36936 * 120.55035 * 234.36258 * 15 14 13 17 17 H 1.08002 * 119.99705 * 152.00925 * 16 15 14 18 18 C 1.38812 * 120.00348 * 332.01326 * 16 15 14 19 19 N 1.31615 * 120.00164 * 342.47467 * 18 16 15 20 20 Si 1.86799 * 120.00024 * 162.47926 * 18 16 15 21 21 H 1.48499 * 109.47311 * 94.32975 * 20 18 16 22 22 H 1.48498 * 109.47481 * 214.33333 * 20 18 16 23 23 H 1.48503 * 109.47019 * 334.32919 * 20 18 16 24 24 C 1.46935 * 118.89346 * 54.34817 * 15 14 13 25 25 C 1.52105 * 110.89350 * 278.50547 * 8 7 6 26 26 N 1.46500 * 109.47074 * 119.99749 * 2 1 3 27 27 C 1.34425 * 126.82360 * 35.00860 * 26 2 1 28 28 N 1.30829 * 108.07782 * 180.20072 * 27 26 2 29 29 C 1.33241 * 109.82879 * 359.60266 * 28 27 26 30 30 N 1.30716 * 108.94626 * 0.39833 * 29 28 27 31 31 H 1.09006 * 109.47143 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47341 * 299.99759 * 1 2 3 33 33 H 1.09001 * 109.47309 * 60.00024 * 1 2 3 34 34 H 1.08999 * 110.37756 * 275.52451 * 7 6 4 35 35 H 1.08995 * 110.37604 * 37.87437 * 7 6 4 36 36 H 1.08997 * 110.73237 * 206.82895 * 9 8 7 37 37 H 1.08991 * 110.89124 * 83.58828 * 9 8 7 38 38 H 1.09000 * 109.47044 * 58.55069 * 12 10 6 39 39 H 1.09003 * 109.46919 * 178.54940 * 12 10 6 40 40 H 1.09003 * 109.47594 * 298.54665 * 12 10 6 41 41 H 1.09002 * 109.47653 * 303.24548 * 13 8 7 42 42 H 1.09004 * 109.47969 * 63.26644 * 13 8 7 43 43 H 1.09003 * 109.60651 * 186.93606 * 14 13 8 44 44 H 1.09002 * 109.60296 * 66.46733 * 14 13 8 45 45 H 0.97003 * 120.00080 * 179.97438 * 19 18 16 46 46 H 1.09007 * 109.60015 * 185.88726 * 24 15 14 47 47 H 1.08999 * 109.60376 * 65.41045 * 24 15 14 48 48 H 1.09004 * 109.47818 * 296.89680 * 25 8 7 49 49 H 1.08997 * 109.47887 * 56.91334 * 25 8 7 50 50 H 1.08001 * 125.95663 * 359.93112 * 27 26 2 51 51 H 1.07996 * 125.52717 * 180.13522 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2498 -2.4546 7 6 0.8647 0.9296 -2.7334 8 6 1.2772 1.3778 -4.1516 9 6 1.5380 0.0317 -4.8613 10 6 2.1262 -0.8439 -3.7330 11 1 3.2143 -0.8539 -3.7977 12 6 1.5856 -2.2707 -3.8459 13 6 0.1389 2.1255 -4.8288 14 6 0.5467 2.4867 -6.2622 15 7 1.8299 3.2012 -6.2206 16 6 1.9612 4.4311 -6.8082 17 1 2.6845 5.1370 -6.4275 18 6 1.1645 4.7706 -7.8931 19 7 0.5430 3.8305 -8.5730 20 14 0.9747 6.5617 -8.3882 21 1 1.9640 6.8905 -9.4457 22 1 -0.3981 6.7892 -8.9068 23 1 1.2071 7.4295 -7.2057 24 6 2.9699 2.5741 -5.5377 25 6 2.5480 2.2125 -4.1085 26 7 2.0183 -0.6906 1.1962 27 6 1.4559 -1.7518 1.7998 28 7 2.1911 -2.0669 2.8351 29 6 3.2314 -1.2386 2.9195 30 7 3.1676 -0.3759 1.9395 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.1903 0.6567 -2.7108 35 1 1.0685 1.7206 -2.0117 36 1 2.2586 0.1550 -5.6698 37 1 0.6086 -0.3962 -5.2367 38 1 0.4982 -2.2541 -3.7725 39 1 1.8784 -2.6953 -4.8062 40 1 1.9949 -2.8793 -3.0396 41 1 -0.7485 1.4929 -4.8520 42 1 -0.0791 3.0371 -4.2723 43 1 -0.2141 3.1271 -6.7086 44 1 0.6539 1.5765 -6.8523 45 1 -0.0140 4.0678 -9.3308 46 1 3.8065 3.2722 -5.5066 47 1 3.2642 1.6707 -6.0718 48 1 2.3642 3.1254 -3.5419 49 1 3.3424 1.6408 -3.6288 50 1 0.5521 -2.2539 1.4874 51 1 4.0001 -1.2718 3.6773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086917874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:10 Heat of formation + Delta-G solvation = 87.621195 kcal Electronic energy + Delta-G solvation = -32214.059513 eV Core-core repulsion = 28151.305025 eV Total energy + Delta-G solvation = -4062.754489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.33679 -40.83418 -38.81843 -36.17785 -35.39219 -33.23589 -32.15793 -31.47414 -31.05312 -30.07045 -29.84985 -27.33940 -26.31703 -25.49333 -24.13669 -23.14114 -22.37767 -22.07437 -21.18696 -21.07181 -19.36915 -18.25826 -17.56183 -17.42389 -16.63770 -16.19692 -15.61158 -15.42052 -15.19266 -14.93766 -14.50417 -14.29483 -14.10841 -14.03945 -13.65862 -13.58882 -13.22382 -13.10149 -13.04972 -12.78787 -12.62627 -12.56659 -12.35056 -12.17274 -11.83599 -11.82739 -11.52536 -11.26440 -11.02536 -10.79690 -10.71629 -10.61370 -10.52787 -10.33636 -10.21801 -10.16190 -9.94665 -9.92908 -9.70080 -9.64917 -9.47378 -8.80324 -8.52547 -6.73464 -5.86247 -3.27923 1.37358 1.87659 2.27898 2.76918 2.84825 3.32066 3.40127 3.42007 3.93208 4.07281 4.11323 4.35674 4.43664 4.49206 4.57637 4.71284 4.90839 4.91622 4.96933 5.07641 5.12841 5.22063 5.27804 5.31019 5.37071 5.48318 5.49364 5.55456 5.63087 5.73748 5.87700 5.94807 5.99004 6.02818 6.05539 6.19941 6.21973 6.23532 6.31237 6.40315 6.51120 6.53557 6.54057 6.61594 6.74049 6.88297 7.25433 7.30222 7.56945 7.73547 7.84226 7.88831 8.38217 9.14728 9.77978 10.34002 11.22155 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021828 B = 0.002510 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.434531 B =11154.711575 C =11616.840453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.143 3.857 3 H 0.130 0.870 4 C 0.518 3.482 5 O -0.527 6.527 6 N -0.602 5.602 7 C 0.097 3.903 8 C -0.054 4.054 9 C -0.117 4.117 10 C 0.137 3.863 11 H 0.075 0.925 12 C -0.160 4.160 13 C -0.126 4.126 14 C 0.173 3.827 15 N -0.590 5.590 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.900 3.100 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.146 3.854 25 C -0.118 4.118 26 N -0.360 5.360 27 C 0.269 3.731 28 N -0.547 5.547 29 C 0.198 3.802 30 N -0.313 5.313 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.020 0.980 45 H 0.254 0.746 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.060 0.940 49 H 0.050 0.950 50 H 0.214 0.786 51 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.207 -9.436 16.054 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.035 3.965 3 H 0.148 0.852 4 C 0.304 3.696 5 O -0.403 6.403 6 N -0.336 5.336 7 C -0.025 4.025 8 C -0.054 4.054 9 C -0.155 4.155 10 C 0.035 3.965 11 H 0.093 0.907 12 C -0.218 4.218 13 C -0.166 4.166 14 C 0.047 3.953 15 N -0.313 5.313 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.020 3.980 25 C -0.158 4.158 26 N -0.150 5.150 27 C -0.028 4.028 28 N -0.274 5.274 29 C -0.105 4.105 30 N -0.139 5.139 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.079 0.921 49 H 0.068 0.932 50 H 0.230 0.770 51 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.458 -9.619 16.087 18.904 hybrid contribution -0.263 0.885 -0.527 1.063 sum -2.721 -8.734 15.560 18.050 Atomic orbital electron populations 1.22336 0.90112 1.04628 1.05687 1.21148 0.96433 0.97981 0.80914 0.85199 1.20113 0.81095 0.84945 0.83479 1.90756 1.37600 1.26111 1.85827 1.48578 1.50628 1.29578 1.04773 1.22778 0.94341 0.86703 0.98714 1.21032 0.97623 0.94906 0.91884 1.22801 1.02124 0.93935 0.96635 1.21694 0.99373 0.93261 0.82191 0.90708 1.22124 1.01056 0.96074 1.02588 1.22054 0.94908 0.98679 1.00969 1.20791 0.89211 0.95763 0.89574 1.44041 1.05109 1.18913 1.63243 1.19170 1.20683 0.90031 1.08338 0.91790 1.25016 1.01470 0.97474 0.95591 1.70024 1.34385 1.30718 1.19522 0.86325 0.77228 0.85149 0.78339 1.21471 1.21554 1.20451 1.20935 0.91176 0.95939 0.89971 1.21838 0.95205 0.98439 1.00283 1.50058 1.19021 1.24434 1.21536 1.25857 0.99204 0.87953 0.89795 1.70561 1.07215 1.28871 1.20782 1.25983 0.97215 0.90177 0.97121 1.78071 1.02628 1.25173 1.08069 0.90771 0.89919 0.88169 0.90732 0.90641 0.89068 0.90450 0.92559 0.91496 0.91718 0.92954 0.92295 0.89369 0.96205 0.93635 0.92817 0.96295 0.92105 0.93163 0.77009 0.76667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 8.66 37.15 0.32 -0.67 16 2 C 0.14 1.36 3.13 -69.09 -0.22 1.14 16 3 H 0.13 1.17 7.86 -51.93 -0.41 0.77 16 4 C 0.52 6.41 7.08 -10.99 -0.08 6.33 16 5 O -0.53 -8.58 15.45 5.56 0.09 -8.49 16 6 N -0.60 -6.85 3.05 -163.12 -0.50 -7.34 16 7 C 0.10 0.98 4.05 -2.75 -0.01 0.97 16 8 C -0.05 -0.71 0.55 -153.99 -0.08 -0.80 16 9 C -0.12 -1.51 4.45 -25.24 -0.11 -1.62 16 10 C 0.14 1.68 3.08 -66.85 -0.21 1.47 16 11 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 12 C -0.16 -1.81 9.10 37.15 0.34 -1.47 16 13 C -0.13 -1.96 4.84 -27.01 -0.13 -2.09 16 14 C 0.17 3.63 5.06 -3.63 -0.02 3.61 16 15 N -0.59 -13.50 2.98 -172.12 -0.51 -14.01 16 16 C -0.25 -6.54 9.57 -15.06 -0.14 -6.69 16 17 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 18 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 19 N -0.90 -24.87 11.20 55.49 0.62 -24.25 16 20 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.15 2.79 6.21 -3.63 -0.02 2.77 16 25 C -0.12 -1.80 4.87 -27.01 -0.13 -1.93 16 26 N -0.36 -4.16 3.04 -57.25 -0.17 -4.33 16 27 C 0.27 2.83 11.77 -90.66 -1.07 1.77 16 28 N -0.55 -6.66 11.19 -15.83 -0.18 -6.84 16 29 C 0.20 2.29 13.03 -91.81 -1.20 1.09 16 30 N -0.31 -4.15 12.70 29.29 0.37 -3.78 16 31 H 0.07 0.38 7.22 -51.93 -0.38 0.00 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.52 4.97 -51.93 -0.26 0.26 16 34 H 0.07 0.63 6.89 -51.93 -0.36 0.27 16 35 H 0.08 0.68 7.30 -51.93 -0.38 0.30 16 36 H 0.09 1.34 6.17 -51.93 -0.32 1.02 16 37 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.84 6.88 -51.93 -0.36 0.48 16 41 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 2.15 6.02 -51.93 -0.31 1.84 16 44 H 0.02 0.44 7.62 -51.93 -0.40 0.04 16 45 H 0.25 6.79 8.31 -40.82 -0.34 6.46 16 46 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 47 H 0.02 0.37 6.55 -51.93 -0.34 0.03 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.05 0.72 7.82 -51.93 -0.41 0.32 16 50 H 0.21 1.41 7.32 -52.49 -0.38 1.02 16 51 H 0.22 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 390.29 15.07 5.88 5.88 Total: -1.00 -33.00 390.29 -10.31 -43.30 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.03 Total: 0.20 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -2.84 Total: 3.88 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.37 Total: -60.55 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.00 -10.31 -43.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086917874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.924 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds