Wall clock time and date at job start Wed Apr 1 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.46919 * 2 1 4 4 C 1.50696 * 109.47327 * 240.00277 * 2 1 3 5 5 O 1.21280 * 119.99872 * 240.00001 * 4 2 1 6 6 N 1.34780 * 120.00061 * 59.99664 * 4 2 1 7 7 C 1.47575 * 125.62669 * 359.69310 * 6 4 2 8 8 C 1.54347 * 104.66492 * 156.60177 * 7 6 4 9 9 C 1.54387 * 102.37966 * 36.39448 * 8 7 6 10 10 C 1.47083 * 125.62933 * 180.02562 * 6 4 2 11 11 H 1.09007 * 109.87304 * 300.54121 * 10 6 4 12 12 C 1.52994 * 109.87803 * 61.53709 * 10 6 4 13 13 C 1.52104 * 110.59660 * 154.14821 * 8 7 6 14 14 C 1.53342 * 109.44474 * 183.25678 * 13 8 7 15 15 N 1.46929 * 108.68806 * 306.70080 * 14 13 8 16 16 C 1.36936 * 120.55035 * 234.36258 * 15 14 13 17 17 H 1.08002 * 119.99705 * 152.00925 * 16 15 14 18 18 C 1.38812 * 120.00348 * 332.01326 * 16 15 14 19 19 N 1.31615 * 120.00164 * 342.47467 * 18 16 15 20 20 Si 1.86799 * 120.00024 * 162.47926 * 18 16 15 21 21 H 1.48499 * 109.47311 * 94.32975 * 20 18 16 22 22 H 1.48498 * 109.47481 * 214.33333 * 20 18 16 23 23 H 1.48503 * 109.47019 * 334.32919 * 20 18 16 24 24 C 1.46935 * 118.89346 * 54.34817 * 15 14 13 25 25 C 1.52105 * 110.89350 * 278.50547 * 8 7 6 26 26 N 1.46500 * 109.47074 * 119.99749 * 2 1 3 27 27 C 1.34425 * 126.82360 * 35.00860 * 26 2 1 28 28 N 1.30829 * 108.07782 * 180.20072 * 27 26 2 29 29 C 1.33241 * 109.82879 * 359.60266 * 28 27 26 30 30 N 1.30716 * 108.94626 * 0.39833 * 29 28 27 31 31 H 1.09006 * 109.47143 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47341 * 299.99759 * 1 2 3 33 33 H 1.09001 * 109.47309 * 60.00024 * 1 2 3 34 34 H 1.08999 * 110.37756 * 275.52451 * 7 6 4 35 35 H 1.08995 * 110.37604 * 37.87437 * 7 6 4 36 36 H 1.08997 * 110.73237 * 206.82895 * 9 8 7 37 37 H 1.08991 * 110.89124 * 83.58828 * 9 8 7 38 38 H 1.09000 * 109.47044 * 58.55069 * 12 10 6 39 39 H 1.09003 * 109.46919 * 178.54940 * 12 10 6 40 40 H 1.09003 * 109.47594 * 298.54665 * 12 10 6 41 41 H 1.09002 * 109.47653 * 303.24548 * 13 8 7 42 42 H 1.09004 * 109.47969 * 63.26644 * 13 8 7 43 43 H 1.09003 * 109.60651 * 186.93606 * 14 13 8 44 44 H 1.09002 * 109.60296 * 66.46733 * 14 13 8 45 45 H 0.97003 * 120.00080 * 179.97438 * 19 18 16 46 46 H 1.09007 * 109.60015 * 185.88726 * 24 15 14 47 47 H 1.08999 * 109.60376 * 65.41045 * 24 15 14 48 48 H 1.09004 * 109.47818 * 296.89680 * 25 8 7 49 49 H 1.08997 * 109.47887 * 56.91334 * 25 8 7 50 50 H 1.08001 * 125.95663 * 359.93112 * 27 26 2 51 51 H 1.07996 * 125.52717 * 180.13522 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2498 -2.4546 7 6 0.8647 0.9296 -2.7334 8 6 1.2772 1.3778 -4.1516 9 6 1.5380 0.0317 -4.8613 10 6 2.1262 -0.8439 -3.7330 11 1 3.2143 -0.8539 -3.7977 12 6 1.5856 -2.2707 -3.8459 13 6 0.1389 2.1255 -4.8288 14 6 0.5467 2.4867 -6.2622 15 7 1.8299 3.2012 -6.2206 16 6 1.9612 4.4311 -6.8082 17 1 2.6845 5.1370 -6.4275 18 6 1.1645 4.7706 -7.8931 19 7 0.5430 3.8305 -8.5730 20 14 0.9747 6.5617 -8.3882 21 1 1.9640 6.8905 -9.4457 22 1 -0.3981 6.7892 -8.9068 23 1 1.2071 7.4295 -7.2057 24 6 2.9699 2.5741 -5.5377 25 6 2.5480 2.2125 -4.1085 26 7 2.0183 -0.6906 1.1962 27 6 1.4559 -1.7518 1.7998 28 7 2.1911 -2.0669 2.8351 29 6 3.2314 -1.2386 2.9195 30 7 3.1676 -0.3759 1.9395 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.1903 0.6567 -2.7108 35 1 1.0685 1.7206 -2.0117 36 1 2.2586 0.1550 -5.6698 37 1 0.6086 -0.3962 -5.2367 38 1 0.4982 -2.2541 -3.7725 39 1 1.8784 -2.6953 -4.8062 40 1 1.9949 -2.8793 -3.0396 41 1 -0.7485 1.4929 -4.8520 42 1 -0.0791 3.0371 -4.2723 43 1 -0.2141 3.1271 -6.7086 44 1 0.6539 1.5765 -6.8523 45 1 -0.0140 4.0678 -9.3308 46 1 3.8065 3.2722 -5.5066 47 1 3.2642 1.6707 -6.0718 48 1 2.3642 3.1254 -3.5419 49 1 3.3424 1.6408 -3.6288 50 1 0.5521 -2.2539 1.4874 51 1 4.0001 -1.2718 3.6773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086917874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:09 Heat of formation + Delta-G solvation = 69.350286 kcal Electronic energy + Delta-G solvation = -32214.851800 eV Core-core repulsion = 28151.305025 eV Total energy + Delta-G solvation = -4063.546775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.14189 -41.84531 -39.95043 -37.57420 -36.17277 -34.80193 -33.06521 -32.68380 -32.30473 -31.51386 -30.64502 -28.74149 -27.26701 -26.38793 -25.59720 -24.19195 -23.67576 -22.91450 -22.58617 -22.04673 -20.28238 -19.65073 -18.58061 -18.32290 -18.10549 -17.12801 -16.79246 -16.55572 -16.23447 -16.02560 -15.73179 -15.49891 -15.17341 -15.12303 -14.99660 -14.68348 -14.45761 -14.33286 -14.14214 -13.72522 -13.51067 -13.33263 -13.24984 -13.16194 -13.09209 -12.98456 -12.87590 -12.55905 -12.51753 -12.30178 -12.13712 -12.01081 -11.81009 -11.74950 -11.53462 -11.27920 -11.09227 -11.05736 -11.00453 -10.80404 -10.52449 -10.45361 -9.75360 -8.61026 -7.84594 -5.28129 0.56649 1.14635 1.37538 1.46983 1.49778 1.58520 1.90764 2.01648 2.53399 3.14416 3.28130 3.41280 3.44514 3.49586 3.68914 3.74070 3.76600 3.85571 3.94712 4.11923 4.21364 4.25276 4.29089 4.44467 4.48548 4.54302 4.61339 4.63882 4.65298 4.70856 4.79042 4.86571 4.91073 4.96919 5.04595 5.07955 5.10262 5.20762 5.23407 5.27633 5.30660 5.36175 5.42092 5.44523 5.45673 5.59418 5.70678 5.79544 5.88456 6.38747 6.43462 6.92700 7.07239 7.20286 7.92368 8.41907 9.20760 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021828 B = 0.002510 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.434531 B =11154.711575 C =11616.840453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.136 0.864 4 C 0.518 3.482 5 O -0.572 6.572 6 N -0.597 5.597 7 C 0.104 3.896 8 C -0.053 4.053 9 C -0.110 4.110 10 C 0.140 3.860 11 H 0.054 0.946 12 C -0.152 4.152 13 C -0.110 4.110 14 C 0.177 3.823 15 N -0.607 5.607 16 C -0.260 4.260 17 H 0.060 0.940 18 C -0.047 4.047 19 N -0.931 5.931 20 Si 0.960 3.040 21 H -0.291 1.291 22 H -0.291 1.291 23 H -0.271 1.271 24 C 0.143 3.857 25 C -0.105 4.105 26 N -0.367 5.367 27 C 0.270 3.730 28 N -0.573 5.573 29 C 0.194 3.806 30 N -0.352 5.352 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.000 1.000 45 H 0.249 0.751 46 H 0.042 0.958 47 H 0.013 0.987 48 H 0.062 0.938 49 H 0.059 0.941 50 H 0.248 0.752 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.960 -9.494 18.050 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.154 0.846 4 C 0.305 3.695 5 O -0.451 6.451 6 N -0.329 5.329 7 C -0.017 4.017 8 C -0.054 4.054 9 C -0.148 4.148 10 C 0.037 3.963 11 H 0.072 0.928 12 C -0.209 4.209 13 C -0.150 4.150 14 C 0.051 3.949 15 N -0.331 5.331 16 C -0.390 4.390 17 H 0.078 0.922 18 C -0.243 4.243 19 N -0.577 5.577 20 Si 0.788 3.212 21 H -0.218 1.218 22 H -0.217 1.217 23 H -0.196 1.196 24 C 0.017 3.983 25 C -0.143 4.143 26 N -0.157 5.157 27 C -0.026 4.026 28 N -0.301 5.301 29 C -0.108 4.108 30 N -0.179 5.179 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.018 0.982 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.031 0.969 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.263 0.737 51 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -4.215 -9.661 18.099 20.944 hybrid contribution 0.379 0.863 -1.210 1.534 sum -3.835 -8.798 16.889 19.425 Atomic orbital electron populations 1.22398 0.86829 1.05845 1.07034 1.21361 0.98748 0.97314 0.78828 0.84619 1.20630 0.80209 0.84413 0.84220 1.90742 1.39620 1.28301 1.86447 1.48550 1.50461 1.29628 1.04300 1.22830 0.95721 0.86719 0.96461 1.20929 0.95854 0.94365 0.94281 1.22685 1.01981 0.94007 0.96122 1.21559 0.98260 0.93893 0.82542 0.92754 1.22034 1.01771 0.94939 1.02206 1.21816 0.96592 0.99628 0.96932 1.20641 0.87582 0.93779 0.92877 1.44296 1.06839 1.18552 1.63408 1.19447 1.20121 0.91307 1.08145 0.92213 1.25672 1.01883 1.00750 0.95948 1.70165 1.35341 1.32218 1.20020 0.85386 0.76656 0.81226 0.77905 1.21819 1.21741 1.19587 1.21036 0.90024 0.95107 0.92111 1.21645 0.96582 0.99006 0.97116 1.50192 1.18681 1.24923 1.21884 1.26561 0.99680 0.87347 0.88998 1.70578 1.07915 1.29600 1.21962 1.26575 0.97548 0.89489 0.97211 1.77995 1.04117 1.26590 1.09149 0.89688 0.88406 0.86855 0.87433 0.88537 0.91465 0.89331 0.91065 0.90962 0.93435 0.90026 0.92123 0.93022 0.98170 0.94167 0.93901 0.96879 0.91944 0.92259 0.73650 0.74157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.66 71.98 0.62 -0.54 16 2 C 0.14 2.32 3.13 44.24 0.14 2.46 16 3 H 0.14 2.03 7.86 -2.39 -0.02 2.01 16 4 C 0.52 11.63 7.08 87.66 0.62 12.25 16 5 O -0.57 -18.08 15.45 -3.03 -0.05 -18.12 16 6 N -0.60 -11.89 3.05 -788.39 -2.41 -14.29 16 7 C 0.10 1.66 4.05 86.63 0.35 2.02 16 8 C -0.05 -1.29 0.55 -51.84 -0.03 -1.32 16 9 C -0.11 -2.67 4.45 31.56 0.14 -2.53 16 10 C 0.14 3.22 3.08 45.37 0.14 3.36 16 11 H 0.05 1.47 8.14 -2.38 -0.02 1.46 16 12 C -0.15 -3.16 9.10 71.98 0.65 -2.51 16 13 C -0.11 -3.16 4.84 30.41 0.15 -3.01 16 14 C 0.18 7.47 5.06 86.41 0.44 7.91 16 15 N -0.61 -28.14 2.98 -698.47 -2.08 -30.22 16 16 C -0.26 -13.66 9.57 84.03 0.80 -12.86 16 17 H 0.06 3.12 7.89 -2.91 -0.02 3.10 16 18 C -0.05 -2.52 4.90 84.86 0.42 -2.10 16 19 N -0.93 -52.67 11.20 21.65 0.24 -52.43 16 20 Si 0.96 43.34 29.59 68.60 2.03 45.37 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.14 5.50 6.21 86.41 0.54 6.03 16 25 C -0.10 -3.02 4.87 30.41 0.15 -2.88 16 26 N -0.37 -7.72 3.04 -335.04 -1.02 -8.74 16 27 C 0.27 5.10 11.77 180.36 2.12 7.23 16 28 N -0.57 -13.13 11.19 -204.01 -2.28 -15.41 16 29 C 0.19 4.30 13.03 180.76 2.36 6.66 16 30 N -0.35 -8.97 12.70 -61.25 -0.78 -9.74 16 31 H 0.08 0.46 7.22 -2.38 -0.02 0.45 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.11 0.53 4.97 -2.39 -0.01 0.52 16 34 H 0.11 1.15 6.89 -2.39 -0.02 1.13 16 35 H 0.10 1.24 7.30 -2.39 -0.02 1.22 16 36 H 0.07 1.97 6.17 -2.39 -0.01 1.96 16 37 H 0.09 1.97 7.69 -2.39 -0.02 1.96 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.05 1.18 6.88 -2.39 -0.02 1.16 16 41 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 42 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.05 2.57 6.02 -2.39 -0.01 2.55 16 44 H 0.00 0.01 7.62 -2.39 -0.02 -0.01 16 45 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 46 H 0.04 1.70 7.93 -2.38 -0.02 1.68 16 47 H 0.01 0.53 6.55 -2.39 -0.02 0.51 16 48 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 49 H 0.06 1.62 7.82 -2.39 -0.02 1.60 16 50 H 0.25 2.45 7.32 -2.91 -0.02 2.43 16 51 H 0.24 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -74.99 390.29 4.20 -70.80 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.93 Total: 12.64 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 9.61 Total: 20.15 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -8.32 Total: -130.83 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.05 Total: -18.12 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -74.99 4.20 -70.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086917874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.147 kcal (2) G-P(sol) polarization free energy of solvation -74.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds