Wall clock time and date at job start Wed Apr 1 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47532 * 2 1 4 4 C 1.50698 * 109.46915 * 239.99966 * 2 1 3 5 5 O 1.21285 * 120.00356 * 326.68376 * 4 2 1 6 6 N 1.34777 * 119.99988 * 146.68530 * 4 2 1 7 7 C 1.47563 * 125.63092 * 4.62176 * 6 4 2 8 8 C 1.54136 * 104.78044 * 203.33152 * 7 6 4 9 9 C 1.54364 * 102.47899 * 323.91390 * 8 7 6 10 10 C 1.47088 * 125.62875 * 184.31404 * 6 4 2 11 11 H 1.09000 * 109.87617 * 59.57366 * 10 6 4 12 12 C 1.52997 * 109.88015 * 298.42471 * 10 6 4 13 13 C 1.52108 * 110.65026 * 206.01198 * 8 7 6 14 14 C 1.53343 * 109.44440 * 295.63116 * 13 8 7 15 15 N 1.46933 * 108.68815 * 306.70125 * 14 13 8 16 16 C 1.36933 * 120.55180 * 234.36597 * 15 14 13 17 17 H 1.08004 * 120.00053 * 148.66838 * 16 15 14 18 18 C 1.38818 * 119.99949 * 328.67430 * 16 15 14 19 19 N 1.31621 * 119.99614 * 161.74019 * 18 16 15 20 20 Si 1.86799 * 120.00031 * 341.73619 * 18 16 15 21 21 H 1.48488 * 109.47059 * 92.32522 * 20 18 16 22 22 H 1.48501 * 109.46947 * 212.32665 * 20 18 16 23 23 H 1.48505 * 109.46820 * 332.32201 * 20 18 16 24 24 C 1.46938 * 118.89414 * 54.34457 * 15 14 13 25 25 C 1.52109 * 110.64656 * 81.79293 * 8 7 6 26 26 N 1.46506 * 109.46807 * 120.00356 * 2 1 3 27 27 C 1.34423 * 126.82377 * 34.70577 * 26 2 1 28 28 N 1.30836 * 108.07821 * 179.89480 * 27 26 2 29 29 C 1.33244 * 109.82470 * 0.38254 * 28 27 26 30 30 N 1.30720 * 108.94637 * 359.76095 * 29 28 27 31 31 H 1.09000 * 109.47102 * 295.98508 * 1 2 3 32 32 H 1.09007 * 109.46797 * 55.98356 * 1 2 3 33 33 H 1.08997 * 109.47729 * 175.98217 * 1 2 3 34 34 H 1.09003 * 110.37663 * 322.16050 * 7 6 4 35 35 H 1.09005 * 110.37318 * 84.50804 * 7 6 4 36 36 H 1.08996 * 110.73420 * 152.99057 * 9 8 7 37 37 H 1.09004 * 110.73105 * 276.29614 * 9 8 7 38 38 H 1.08992 * 109.47152 * 61.45324 * 12 10 6 39 39 H 1.09004 * 109.47022 * 181.45115 * 12 10 6 40 40 H 1.09000 * 109.46667 * 301.45006 * 12 10 6 41 41 H 1.08998 * 109.47342 * 55.62287 * 13 8 7 42 42 H 1.09000 * 109.47510 * 175.63959 * 13 8 7 43 43 H 1.08998 * 109.59960 * 186.94765 * 14 13 8 44 44 H 1.08995 * 109.73287 * 66.54101 * 14 13 8 45 45 H 0.97001 * 119.99681 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.59546 * 185.89241 * 24 15 14 47 47 H 1.08997 * 109.60269 * 65.41164 * 24 15 14 48 48 H 1.09004 * 109.47188 * 184.36057 * 25 8 7 49 49 H 1.09000 * 109.47431 * 304.36669 * 25 8 7 50 50 H 1.08000 * 125.96392 * 0.03959 * 27 26 2 51 51 H 1.07994 * 125.52521 * 179.72882 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.4069 -1.6422 -1.6905 6 7 3.1765 -0.3104 -1.8197 7 6 4.0823 0.7393 -1.3144 8 6 4.8513 1.2271 -2.5580 9 6 5.0313 -0.0733 -3.3701 10 6 3.7318 -0.8524 -3.0692 11 1 3.0206 -0.7109 -3.8829 12 6 4.0416 -2.3409 -2.8982 13 6 6.2031 1.8011 -2.1618 14 6 5.9936 3.0511 -1.2987 15 7 5.1052 3.9755 -2.0165 16 6 5.4870 5.2702 -2.2466 17 1 5.1463 5.7842 -3.1333 18 6 6.3120 5.9220 -1.3402 19 7 6.9673 7.0032 -1.7064 20 14 6.4920 5.2649 0.3991 21 1 7.6528 4.3409 0.4614 22 1 6.7093 6.3965 1.3358 23 1 5.2570 4.5349 0.7826 24 6 3.8005 3.4872 -2.4838 25 6 4.0226 2.2347 -3.3401 26 7 2.0183 -0.6907 1.1962 27 6 1.4528 -1.7486 1.8030 28 7 2.1928 -2.0692 2.8332 29 6 3.2301 -1.2374 2.9208 30 7 3.1668 -0.3753 1.9402 31 1 -0.3633 0.4503 0.9238 32 1 -0.3633 0.5750 -0.8519 33 1 -0.3634 -1.0251 -0.0720 34 1 3.5091 1.5572 -0.8776 35 1 4.7724 0.3238 -0.5801 36 1 5.1158 0.1452 -4.4346 37 1 5.9001 -0.6302 -3.0193 38 1 3.1211 -2.8803 -2.6752 39 1 4.4764 -2.7296 -3.8191 40 1 4.7480 -2.4732 -2.0787 41 1 6.7616 1.0569 -1.5941 42 1 6.7615 2.0683 -3.0589 43 1 6.9534 3.5344 -1.1160 44 1 5.5388 2.7705 -0.3487 45 1 7.5435 7.4589 -1.0730 46 1 3.3147 4.2579 -3.0822 47 1 3.1750 3.2379 -1.6266 48 1 4.5504 2.5080 -4.2539 49 1 3.0593 1.7931 -3.5951 50 1 0.5470 -2.2483 1.4927 51 1 3.9981 -1.2699 3.6794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086917875.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:14 Heat of formation + Delta-G solvation = 88.191458 kcal Electronic energy + Delta-G solvation = -33074.778817 eV Core-core repulsion = 29012.049057 eV Total energy + Delta-G solvation = -4062.729760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.36434 -40.87779 -38.98633 -36.47782 -35.20235 -33.25200 -32.05245 -31.56022 -31.23696 -30.55755 -30.16015 -27.59890 -26.14885 -25.51213 -24.14398 -23.25742 -22.70323 -22.06579 -21.40525 -20.80141 -19.50411 -18.53006 -17.74986 -17.45922 -16.74677 -16.19386 -15.70019 -15.39565 -15.30831 -14.88768 -14.45125 -14.41545 -14.27495 -14.02208 -13.85808 -13.72287 -13.30093 -13.11654 -13.00790 -12.82607 -12.62354 -12.47537 -12.46059 -12.21562 -12.08291 -11.90243 -11.80726 -11.64800 -11.20689 -10.99741 -10.91646 -10.78302 -10.62171 -10.52643 -10.22610 -10.12981 -9.97977 -9.93262 -9.68735 -9.59325 -9.49836 -8.81978 -8.64924 -6.96744 -5.99702 -3.39993 1.33790 1.61345 2.56821 2.74248 2.80290 3.28810 3.45565 3.47832 4.01111 4.03584 4.12255 4.43275 4.48644 4.50193 4.57589 4.64760 4.77659 4.90558 4.97092 5.04250 5.12518 5.16847 5.20221 5.24097 5.34981 5.39552 5.48809 5.57739 5.60352 5.63709 5.72924 5.77457 5.84295 5.92020 5.96633 5.98739 6.07020 6.12638 6.20732 6.21618 6.25828 6.35244 6.38235 6.50516 6.57332 6.60556 6.62152 6.85550 7.26225 7.77809 7.87128 7.95115 8.29683 8.89850 9.67032 10.05589 11.16308 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.004093 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.540826 B = 6840.053364 C = 8072.505703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 H 0.124 0.876 4 C 0.523 3.477 5 O -0.531 6.531 6 N -0.597 5.597 7 C 0.106 3.894 8 C -0.056 4.056 9 C -0.121 4.121 10 C 0.136 3.864 11 H 0.077 0.923 12 C -0.161 4.161 13 C -0.118 4.118 14 C 0.126 3.874 15 N -0.603 5.603 16 C -0.263 4.263 17 H 0.083 0.917 18 C 0.027 3.973 19 N -0.909 5.909 20 Si 0.883 3.117 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.149 3.851 25 C -0.120 4.120 26 N -0.370 5.370 27 C 0.265 3.735 28 N -0.546 5.546 29 C 0.198 3.802 30 N -0.310 5.310 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.025 0.975 45 H 0.263 0.737 46 H 0.065 0.935 47 H 0.018 0.982 48 H 0.068 0.932 49 H 0.054 0.946 50 H 0.217 0.783 51 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 -17.839 1.468 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 H 0.142 0.858 4 C 0.308 3.692 5 O -0.408 6.408 6 N -0.329 5.329 7 C -0.016 4.016 8 C -0.057 4.057 9 C -0.159 4.159 10 C 0.033 3.967 11 H 0.095 0.905 12 C -0.219 4.219 13 C -0.158 4.158 14 C 0.000 4.000 15 N -0.327 5.327 16 C -0.391 4.391 17 H 0.101 0.899 18 C -0.172 4.172 19 N -0.551 5.551 20 Si 0.713 3.287 21 H -0.215 1.215 22 H -0.231 1.231 23 H -0.195 1.195 24 C 0.023 3.977 25 C -0.159 4.159 26 N -0.162 5.162 27 C -0.031 4.031 28 N -0.273 5.273 29 C -0.104 4.104 30 N -0.136 5.136 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.043 0.957 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.036 0.964 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.233 0.767 51 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.829 -17.851 1.325 20.421 hybrid contribution 0.196 -0.226 0.926 0.973 sum -9.633 -18.076 2.250 20.606 Atomic orbital electron populations 1.22062 0.89683 1.04971 1.04481 1.21465 0.97018 0.98244 0.79955 0.85836 1.20086 0.80171 0.84066 0.84911 1.90697 1.56866 1.28023 1.65176 1.48687 1.21273 1.38002 1.24961 1.22604 0.92451 0.89538 0.97043 1.20987 0.96585 0.94205 0.93933 1.22826 0.96071 0.95680 1.01351 1.21651 0.95408 0.93664 0.85930 0.90464 1.22124 1.02430 0.95404 1.01900 1.21868 0.94279 0.98232 1.01396 1.21382 0.95377 0.90002 0.93232 1.44303 1.13229 1.08474 1.66718 1.18891 1.28530 0.87187 1.04481 0.89908 1.25365 0.98422 0.95610 0.97792 1.69815 1.29407 1.20863 1.35051 0.86929 0.78152 0.77088 0.86486 1.21534 1.23122 1.19461 1.20976 0.87766 0.93833 0.95161 1.21856 0.98351 0.96361 0.99326 1.50381 1.19316 1.24764 1.21765 1.26037 0.99297 0.88038 0.89767 1.70611 1.07095 1.29037 1.20557 1.26070 0.97303 0.89885 0.97191 1.78207 1.02856 1.24412 1.08130 0.90316 0.89058 0.90014 0.89810 0.90820 0.89733 0.90501 0.91358 0.91629 0.92749 0.92537 0.90960 0.90935 0.95670 0.92721 0.91697 0.96392 0.91283 0.92757 0.76664 0.76581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.47 37.16 0.31 -0.86 16 2 C 0.14 1.49 3.38 -69.08 -0.23 1.26 16 3 H 0.12 1.36 6.45 -51.93 -0.34 1.03 16 4 C 0.52 6.57 7.01 -10.99 -0.08 6.50 16 5 O -0.53 -7.62 15.05 5.55 0.08 -7.54 16 6 N -0.60 -7.46 3.06 -163.25 -0.50 -7.96 16 7 C 0.11 1.41 4.69 -2.87 -0.01 1.40 16 8 C -0.06 -0.76 0.54 -154.11 -0.08 -0.85 16 9 C -0.12 -1.36 5.43 -25.24 -0.14 -1.49 16 10 C 0.14 1.57 3.13 -66.84 -0.21 1.36 16 11 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.16 -1.78 9.10 37.16 0.34 -1.44 16 13 C -0.12 -1.87 4.83 -27.01 -0.13 -2.00 16 14 C 0.13 2.54 3.94 -3.63 -0.01 2.53 16 15 N -0.60 -13.34 2.70 -172.12 -0.47 -13.80 16 16 C -0.26 -7.03 10.00 -15.06 -0.15 -7.19 16 17 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 18 C 0.03 0.77 5.24 -17.43 -0.09 0.68 16 19 N -0.91 -27.29 13.97 55.49 0.78 -26.51 16 20 Si 0.88 21.90 24.37 -169.99 -4.14 17.75 16 21 H -0.29 -6.89 6.66 56.52 0.38 -6.52 16 22 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 23 H -0.27 -6.55 6.65 56.52 0.38 -6.18 16 24 C 0.15 2.66 6.20 -3.63 -0.02 2.64 16 25 C -0.12 -1.74 4.83 -27.01 -0.13 -1.87 16 26 N -0.37 -4.34 3.53 -57.24 -0.20 -4.54 16 27 C 0.27 2.84 11.78 -90.66 -1.07 1.77 16 28 N -0.55 -6.67 11.19 -15.83 -0.18 -6.84 16 29 C 0.20 2.34 13.03 -91.80 -1.20 1.15 16 30 N -0.31 -4.15 12.70 29.29 0.37 -3.78 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.08 0.60 7.00 -51.93 -0.36 0.23 16 34 H 0.08 1.20 4.72 -51.93 -0.25 0.95 16 35 H 0.07 1.05 7.97 -51.93 -0.41 0.64 16 36 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 37 H 0.08 0.82 7.69 -51.93 -0.40 0.42 16 38 H 0.07 0.87 6.75 -51.93 -0.35 0.52 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.65 4.78 -51.93 -0.25 1.40 16 44 H 0.03 0.51 6.54 -51.93 -0.34 0.17 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 47 H 0.02 0.31 6.57 -51.93 -0.34 -0.03 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.05 0.71 7.85 -51.93 -0.41 0.30 16 50 H 0.22 1.55 7.43 -52.49 -0.39 1.16 16 51 H 0.22 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -32.92 387.82 -9.39 -42.31 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.07 Total: 1.48 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -2.90 Total: 3.59 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.20 Total: -63.44 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.08 Total: -7.54 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.75 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.92 -9.39 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086917875.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.503 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds