Wall clock time and date at job start Wed Apr 1 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47532 * 2 1 4 4 C 1.50698 * 109.46915 * 239.99966 * 2 1 3 5 5 O 1.21285 * 120.00356 * 326.68376 * 4 2 1 6 6 N 1.34777 * 119.99988 * 146.68530 * 4 2 1 7 7 C 1.47563 * 125.63092 * 4.62176 * 6 4 2 8 8 C 1.54136 * 104.78044 * 203.33152 * 7 6 4 9 9 C 1.54364 * 102.47899 * 323.91390 * 8 7 6 10 10 C 1.47088 * 125.62875 * 184.31404 * 6 4 2 11 11 H 1.09000 * 109.87617 * 59.57366 * 10 6 4 12 12 C 1.52997 * 109.88015 * 298.42471 * 10 6 4 13 13 C 1.52108 * 110.65026 * 206.01198 * 8 7 6 14 14 C 1.53343 * 109.44440 * 295.63116 * 13 8 7 15 15 N 1.46933 * 108.68815 * 306.70125 * 14 13 8 16 16 C 1.36933 * 120.55180 * 234.36597 * 15 14 13 17 17 H 1.08004 * 120.00053 * 148.66838 * 16 15 14 18 18 C 1.38818 * 119.99949 * 328.67430 * 16 15 14 19 19 N 1.31621 * 119.99614 * 161.74019 * 18 16 15 20 20 Si 1.86799 * 120.00031 * 341.73619 * 18 16 15 21 21 H 1.48488 * 109.47059 * 92.32522 * 20 18 16 22 22 H 1.48501 * 109.46947 * 212.32665 * 20 18 16 23 23 H 1.48505 * 109.46820 * 332.32201 * 20 18 16 24 24 C 1.46938 * 118.89414 * 54.34457 * 15 14 13 25 25 C 1.52109 * 110.64656 * 81.79293 * 8 7 6 26 26 N 1.46506 * 109.46807 * 120.00356 * 2 1 3 27 27 C 1.34423 * 126.82377 * 34.70577 * 26 2 1 28 28 N 1.30836 * 108.07821 * 179.89480 * 27 26 2 29 29 C 1.33244 * 109.82470 * 0.38254 * 28 27 26 30 30 N 1.30720 * 108.94637 * 359.76095 * 29 28 27 31 31 H 1.09000 * 109.47102 * 295.98508 * 1 2 3 32 32 H 1.09007 * 109.46797 * 55.98356 * 1 2 3 33 33 H 1.08997 * 109.47729 * 175.98217 * 1 2 3 34 34 H 1.09003 * 110.37663 * 322.16050 * 7 6 4 35 35 H 1.09005 * 110.37318 * 84.50804 * 7 6 4 36 36 H 1.08996 * 110.73420 * 152.99057 * 9 8 7 37 37 H 1.09004 * 110.73105 * 276.29614 * 9 8 7 38 38 H 1.08992 * 109.47152 * 61.45324 * 12 10 6 39 39 H 1.09004 * 109.47022 * 181.45115 * 12 10 6 40 40 H 1.09000 * 109.46667 * 301.45006 * 12 10 6 41 41 H 1.08998 * 109.47342 * 55.62287 * 13 8 7 42 42 H 1.09000 * 109.47510 * 175.63959 * 13 8 7 43 43 H 1.08998 * 109.59960 * 186.94765 * 14 13 8 44 44 H 1.08995 * 109.73287 * 66.54101 * 14 13 8 45 45 H 0.97001 * 119.99681 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.59546 * 185.89241 * 24 15 14 47 47 H 1.08997 * 109.60269 * 65.41164 * 24 15 14 48 48 H 1.09004 * 109.47188 * 184.36057 * 25 8 7 49 49 H 1.09000 * 109.47431 * 304.36669 * 25 8 7 50 50 H 1.08000 * 125.96392 * 0.03959 * 27 26 2 51 51 H 1.07994 * 125.52521 * 179.72882 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.4069 -1.6422 -1.6905 6 7 3.1765 -0.3104 -1.8197 7 6 4.0823 0.7393 -1.3144 8 6 4.8513 1.2271 -2.5580 9 6 5.0313 -0.0733 -3.3701 10 6 3.7318 -0.8524 -3.0692 11 1 3.0206 -0.7109 -3.8829 12 6 4.0416 -2.3409 -2.8982 13 6 6.2031 1.8011 -2.1618 14 6 5.9936 3.0511 -1.2987 15 7 5.1052 3.9755 -2.0165 16 6 5.4870 5.2702 -2.2466 17 1 5.1463 5.7842 -3.1333 18 6 6.3120 5.9220 -1.3402 19 7 6.9673 7.0032 -1.7064 20 14 6.4920 5.2649 0.3991 21 1 7.6528 4.3409 0.4614 22 1 6.7093 6.3965 1.3358 23 1 5.2570 4.5349 0.7826 24 6 3.8005 3.4872 -2.4838 25 6 4.0226 2.2347 -3.3401 26 7 2.0183 -0.6907 1.1962 27 6 1.4528 -1.7486 1.8030 28 7 2.1928 -2.0692 2.8332 29 6 3.2301 -1.2374 2.9208 30 7 3.1668 -0.3753 1.9402 31 1 -0.3633 0.4503 0.9238 32 1 -0.3633 0.5750 -0.8519 33 1 -0.3634 -1.0251 -0.0720 34 1 3.5091 1.5572 -0.8776 35 1 4.7724 0.3238 -0.5801 36 1 5.1158 0.1452 -4.4346 37 1 5.9001 -0.6302 -3.0193 38 1 3.1211 -2.8803 -2.6752 39 1 4.4764 -2.7296 -3.8191 40 1 4.7480 -2.4732 -2.0787 41 1 6.7616 1.0569 -1.5941 42 1 6.7615 2.0683 -3.0589 43 1 6.9534 3.5344 -1.1160 44 1 5.5388 2.7705 -0.3487 45 1 7.5435 7.4589 -1.0730 46 1 3.3147 4.2579 -3.0822 47 1 3.1750 3.2379 -1.6266 48 1 4.5504 2.5080 -4.2539 49 1 3.0593 1.7931 -3.5951 50 1 0.5470 -2.2483 1.4927 51 1 3.9981 -1.2699 3.6794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086917875.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:13 Heat of formation + Delta-G solvation = 69.163576 kcal Electronic energy + Delta-G solvation = -33075.603928 eV Core-core repulsion = 29012.049057 eV Total energy + Delta-G solvation = -4063.554871 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.21539 -41.91579 -40.10437 -37.84064 -36.06584 -34.84762 -33.23687 -32.76910 -32.41785 -32.00470 -30.93002 -28.98338 -27.12652 -26.38264 -25.72371 -24.57769 -23.76125 -22.97963 -22.76227 -21.81098 -20.49203 -19.84530 -18.70424 -18.59159 -18.24354 -17.27051 -17.08091 -16.64113 -16.22182 -16.00576 -15.78453 -15.42782 -15.33750 -15.20712 -15.15348 -15.02262 -14.49820 -14.29357 -14.21012 -13.92442 -13.80518 -13.53495 -13.41781 -13.28437 -13.23969 -13.17179 -12.91032 -12.58687 -12.53062 -12.35483 -12.20588 -12.18127 -12.02978 -11.72570 -11.61921 -11.49590 -11.18092 -11.12739 -11.09843 -10.87448 -10.64604 -10.51564 -9.81526 -8.83731 -8.16400 -5.51157 0.48674 0.75944 1.29894 1.41353 1.49424 1.66818 1.83966 1.94220 2.41507 3.07230 3.09719 3.27875 3.34086 3.38920 3.40821 3.62764 3.68841 3.79604 3.92497 4.03635 4.07938 4.19071 4.21299 4.32541 4.37887 4.40342 4.52328 4.55375 4.59920 4.62607 4.65355 4.72606 4.74815 4.82101 4.87579 4.98925 5.00209 5.03376 5.13469 5.16433 5.17243 5.21674 5.24516 5.31373 5.32632 5.38590 5.50306 5.72143 5.91498 6.15425 6.27941 6.82544 6.95288 7.01945 7.64036 8.05553 9.03861 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.004093 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.540826 B = 6840.053364 C = 8072.505703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.140 3.860 3 H 0.118 0.882 4 C 0.521 3.479 5 O -0.549 6.549 6 N -0.598 5.598 7 C 0.116 3.884 8 C -0.055 4.055 9 C -0.109 4.109 10 C 0.133 3.867 11 H 0.081 0.919 12 C -0.152 4.152 13 C -0.108 4.108 14 C 0.122 3.878 15 N -0.616 5.616 16 C -0.245 4.245 17 H 0.050 0.950 18 C -0.029 4.029 19 N -0.959 5.959 20 Si 0.943 3.057 21 H -0.275 1.275 22 H -0.314 1.314 23 H -0.261 1.261 24 C 0.144 3.856 25 C -0.106 4.106 26 N -0.375 5.375 27 C 0.269 3.731 28 N -0.567 5.567 29 C 0.197 3.803 30 N -0.344 5.344 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.029 0.971 45 H 0.261 0.739 46 H 0.054 0.946 47 H 0.031 0.969 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.247 0.753 51 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.006 -20.611 1.643 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.034 3.966 3 H 0.136 0.864 4 C 0.307 3.693 5 O -0.427 6.427 6 N -0.330 5.330 7 C -0.007 4.007 8 C -0.055 4.055 9 C -0.147 4.147 10 C 0.031 3.969 11 H 0.099 0.901 12 C -0.210 4.210 13 C -0.148 4.148 14 C -0.003 4.003 15 N -0.341 5.341 16 C -0.375 4.375 17 H 0.068 0.932 18 C -0.224 4.224 19 N -0.605 5.605 20 Si 0.772 3.228 21 H -0.202 1.202 22 H -0.243 1.243 23 H -0.185 1.185 24 C 0.019 3.981 25 C -0.145 4.145 26 N -0.167 5.167 27 C -0.027 4.027 28 N -0.295 5.295 29 C -0.106 4.106 30 N -0.171 5.171 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.263 0.737 51 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -10.886 -20.675 1.489 23.413 hybrid contribution 0.447 0.601 0.800 1.096 sum -10.439 -20.074 2.290 22.741 Atomic orbital electron populations 1.22099 0.87407 1.05658 1.05513 1.21572 0.98704 0.97427 0.78916 0.86407 1.20405 0.79876 0.83784 0.85208 1.90689 1.57326 1.28810 1.65825 1.48739 1.21227 1.37760 1.25273 1.22394 0.92273 0.89416 0.96592 1.20896 0.95121 0.95042 0.94491 1.22769 0.96306 0.93826 1.01808 1.21761 0.95560 0.93964 0.85621 0.90086 1.22043 1.01424 0.94849 1.02695 1.21732 0.95899 0.96644 1.00505 1.21388 0.93588 0.91148 0.94149 1.44414 1.15318 1.07256 1.67094 1.18837 1.26860 0.89004 1.02832 0.93195 1.25937 0.99034 0.96206 1.01203 1.69944 1.31350 1.23034 1.36137 0.85954 0.78782 0.76264 0.81795 1.20180 1.24313 1.18532 1.21143 0.85925 0.95077 0.95953 1.21692 0.99654 0.94872 0.98299 1.50428 1.19128 1.25169 1.21929 1.26659 0.99658 0.87406 0.88998 1.70640 1.07689 1.29662 1.21475 1.26615 0.97585 0.89192 0.97210 1.78148 1.04134 1.25676 1.09146 0.89093 0.88225 0.89448 0.90765 0.91452 0.88236 0.89454 0.93144 0.89539 0.93403 0.90254 0.91554 0.93650 0.95275 0.93027 0.92748 0.95086 0.91845 0.90560 0.73738 0.74249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.47 71.98 0.61 -1.30 16 2 C 0.14 2.71 3.38 44.24 0.15 2.86 16 3 H 0.12 2.41 6.45 -2.39 -0.02 2.39 16 4 C 0.52 11.98 7.01 87.66 0.61 12.60 16 5 O -0.55 -14.56 15.05 -3.04 -0.05 -14.60 16 6 N -0.60 -13.45 3.06 -788.78 -2.41 -15.86 16 7 C 0.12 2.82 4.69 86.56 0.41 3.23 16 8 C -0.05 -1.33 0.54 -51.92 -0.03 -1.36 16 9 C -0.11 -2.05 5.43 31.56 0.17 -1.87 16 10 C 0.13 2.65 3.13 45.38 0.14 2.79 16 11 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 12 C -0.15 -2.93 9.10 71.98 0.65 -2.28 16 13 C -0.11 -3.19 4.83 30.41 0.15 -3.04 16 14 C 0.12 4.79 3.94 86.41 0.34 5.13 16 15 N -0.62 -27.01 2.70 -698.48 -1.89 -28.90 16 16 C -0.25 -13.45 10.00 84.04 0.84 -12.61 16 17 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 18 C -0.03 -1.65 5.24 84.86 0.44 -1.21 16 19 N -0.96 -59.52 13.97 21.65 0.30 -59.22 16 20 Si 0.94 45.96 24.37 68.60 1.67 47.63 16 21 H -0.28 -12.70 6.66 99.48 0.66 -12.04 16 22 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 23 H -0.26 -12.16 6.65 99.48 0.66 -11.50 16 24 C 0.14 4.99 6.20 86.41 0.54 5.53 16 25 C -0.11 -2.84 4.83 30.41 0.15 -2.70 16 26 N -0.37 -8.11 3.53 -335.01 -1.18 -9.29 16 27 C 0.27 5.19 11.78 180.36 2.13 7.32 16 28 N -0.57 -12.88 11.19 -204.00 -2.28 -15.16 16 29 C 0.20 4.35 13.03 180.76 2.36 6.70 16 30 N -0.34 -8.74 12.70 -61.24 -0.78 -9.52 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 1.12 8.14 -2.38 -0.02 1.11 16 33 H 0.09 1.04 7.00 -2.39 -0.02 1.02 16 34 H 0.07 1.97 4.72 -2.39 -0.01 1.96 16 35 H 0.07 1.77 7.97 -2.38 -0.02 1.75 16 36 H 0.10 1.63 8.01 -2.39 -0.02 1.61 16 37 H 0.09 1.51 7.69 -2.38 -0.02 1.49 16 38 H 0.05 1.17 6.75 -2.39 -0.02 1.15 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 1.99 8.09 -2.39 -0.02 1.97 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.05 2.03 4.78 -2.39 -0.01 2.01 16 44 H 0.03 1.13 6.54 -2.39 -0.02 1.11 16 45 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 47 H 0.03 1.02 6.57 -2.39 -0.02 1.01 16 48 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 49 H 0.08 1.74 7.85 -2.39 -0.02 1.73 16 50 H 0.25 2.84 7.43 -2.91 -0.02 2.82 16 51 H 0.24 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -72.68 387.82 3.89 -68.80 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.84 Total: 16.33 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 9.66 Total: 19.79 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -8.24 Total: -137.95 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.05 Total: -14.60 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.67 Total: 47.63 kcal Total: -72.68 3.89 -68.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086917875.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.959 kcal (2) G-P(sol) polarization free energy of solvation -72.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds