Wall clock time and date at job start Wed Apr 1 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.00006 * 2 1 4 4 C 1.54320 * 109.88149 * 238.89834 * 2 1 3 5 5 H 1.09002 * 110.72408 * 336.93523 * 4 2 1 6 6 N 1.46503 * 110.71908 * 100.03004 * 4 2 1 7 7 C 1.34771 * 119.99982 * 202.55791 * 6 4 2 8 8 O 1.21565 * 120.00443 * 0.02562 * 7 6 4 9 9 C 1.47713 * 119.99843 * 179.97438 * 7 6 4 10 10 C 1.41502 * 126.51665 * 180.28960 * 9 7 6 11 11 C 1.35367 * 105.50021 * 180.10422 * 10 9 7 12 12 C 1.50705 * 126.38335 * 179.90288 * 11 10 9 13 13 H 1.08997 * 109.90820 * 5.81206 * 12 11 10 14 14 C 1.54000 * 109.91424 * 244.71417 * 12 11 10 15 15 C 1.54598 * 105.22213 * 239.37034 * 14 12 11 16 16 C 1.55092 * 102.84998 * 338.15300 * 15 14 12 17 17 N 1.47897 * 109.92016 * 127.12600 * 12 11 10 18 18 C 1.46906 * 110.99555 * 265.19587 * 17 12 11 19 19 N 1.35032 * 107.22976 * 359.63770 * 11 10 9 20 20 H 0.96998 * 124.87980 * 180.21741 * 19 11 10 21 21 N 1.28462 * 110.23262 * 0.24443 * 19 11 10 22 22 C 1.55156 * 103.10201 * 218.48037 * 4 2 1 23 23 C 1.54908 * 101.57991 * 35.41613 * 22 4 2 24 24 N 1.47319 * 110.05942 * 121.16874 * 2 1 3 25 25 C 1.36940 * 125.61991 * 298.31775 * 24 2 1 26 26 H 1.08000 * 119.99172 * 359.80272 * 25 24 2 27 27 C 1.38803 * 120.00251 * 179.80018 * 25 24 2 28 28 N 1.31622 * 120.00067 * 0.02562 * 27 25 24 29 29 Si 1.86803 * 120.00027 * 179.97438 * 27 25 24 30 30 H 1.48504 * 109.47045 * 0.02562 * 29 27 25 31 31 H 1.48505 * 109.47081 * 120.00162 * 29 27 25 32 32 H 1.48496 * 109.47466 * 239.99980 * 29 27 25 33 33 H 1.09000 * 109.47107 * 181.10113 * 1 2 3 34 34 H 1.09000 * 109.47132 * 301.10339 * 1 2 3 35 35 H 1.09003 * 109.46931 * 61.09906 * 1 2 3 36 36 H 0.97003 * 120.00057 * 22.55814 * 6 4 2 37 37 H 1.07999 * 127.25196 * 359.97438 * 10 9 7 38 38 H 1.09002 * 110.31026 * 358.33789 * 14 12 11 39 39 H 1.09000 * 110.30915 * 120.40818 * 14 12 11 40 40 H 1.09003 * 110.72246 * 96.45403 * 15 14 12 41 41 H 1.09003 * 110.72391 * 219.72762 * 15 14 12 42 42 H 1.09003 * 110.59460 * 278.87433 * 16 15 14 43 43 H 1.08995 * 110.83386 * 155.84768 * 16 15 14 44 44 H 1.08997 * 109.47346 * 60.00077 * 18 17 12 45 45 H 1.09005 * 109.46817 * 179.97438 * 18 17 12 46 46 H 1.08998 * 109.46753 * 299.99603 * 18 17 12 47 47 H 1.08996 * 111.00410 * 153.49326 * 22 4 2 48 48 H 1.09003 * 111.00206 * 277.30203 * 22 4 2 49 49 H 1.08996 * 110.37014 * 81.83176 * 23 22 4 50 50 H 1.09004 * 110.36301 * 204.03993 * 23 22 4 51 51 H 0.97001 * 119.99810 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 1 1.3039 -1.4438 -1.6200 6 7 2.4555 0.1959 -2.2875 7 6 2.5056 -0.2028 -3.5739 8 8 2.2179 -1.3469 -3.8674 9 6 2.9091 0.7507 -4.6274 10 6 3.0030 0.4835 -6.0138 11 6 3.4085 1.6446 -6.5793 12 6 3.6611 1.8845 -8.0456 13 1 3.3708 1.0054 -8.6209 14 6 5.1517 2.1943 -8.2773 15 6 5.1790 3.6005 -8.9191 16 6 3.7529 3.7362 -9.5133 17 7 2.8965 3.0654 -8.5020 18 6 1.6085 2.6655 -9.0846 19 7 3.5388 2.5495 -5.5855 20 1 3.8152 3.4712 -5.7073 21 7 3.2446 2.0138 -4.4556 22 6 3.2869 -1.5178 -0.6956 23 6 2.8160 -1.8831 0.7342 24 7 2.0353 -0.7162 1.1841 25 6 1.8129 -0.3592 2.4873 26 1 1.2243 0.5175 2.7139 27 6 2.3437 -1.1240 3.5167 28 7 3.0614 -2.1922 3.2404 29 14 2.0408 -0.6365 5.2944 30 1 1.2106 0.5941 5.3356 31 1 1.3301 -1.7362 5.9951 32 1 3.3403 -0.3802 5.9658 33 1 -0.3633 -1.0275 0.0197 34 1 -0.3633 0.5309 0.8799 35 1 -0.3633 0.4967 -0.8997 36 1 2.6848 1.1089 -2.0534 37 1 2.7969 -0.4507 -6.5150 38 1 5.6887 2.2008 -7.3287 39 1 5.5897 1.4609 -8.9543 40 1 5.3562 4.3660 -8.1635 41 1 5.9326 3.6512 -9.7050 42 1 3.6873 3.2243 -10.4734 43 1 3.4748 4.7849 -9.6182 44 1 1.0197 2.1360 -8.3356 45 1 1.0665 3.5530 -9.4116 46 1 1.7836 2.0111 -9.9385 47 1 3.4811 -2.4145 -1.2841 48 1 4.1665 -0.8747 -0.6656 49 1 2.1879 -2.7736 0.7109 50 1 3.6742 -2.0421 1.3872 51 1 3.4327 -2.7264 3.9599 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088582283.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:53 Heat of formation + Delta-G solvation = 72.084119 kcal Electronic energy + Delta-G solvation = -30492.089700 eV Core-core repulsion = 26428.661473 eV Total energy + Delta-G solvation = -4063.428227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.83682 -39.54068 -39.19598 -37.36294 -33.93930 -32.80253 -32.30067 -32.00153 -31.56036 -30.28314 -28.64791 -28.13367 -26.10881 -25.27734 -23.94120 -23.33466 -22.13368 -21.75276 -21.12033 -20.24324 -19.97098 -19.22921 -17.99530 -16.87265 -16.66133 -16.53584 -15.81981 -15.70010 -15.43078 -14.90751 -14.66124 -14.27651 -14.16822 -13.91331 -13.85582 -13.73012 -13.65835 -13.23810 -13.00101 -12.69881 -12.25118 -12.08446 -12.01332 -11.97203 -11.87651 -11.64466 -11.49936 -11.31578 -11.07346 -10.94357 -10.82424 -10.78880 -10.46785 -10.37666 -10.02538 -9.79703 -9.67363 -9.50349 -9.44558 -9.20782 -9.09616 -8.62473 -8.49543 -6.81793 -5.60562 -3.03054 1.58876 1.95206 2.73572 3.33212 3.42519 3.46846 3.49981 3.51701 3.60984 4.02215 4.04765 4.33044 4.44234 4.49595 4.53794 4.72067 4.85704 4.90494 4.95743 5.13359 5.17918 5.26096 5.31826 5.40316 5.43772 5.46564 5.48199 5.52199 5.57754 5.62357 5.66814 5.70956 5.90747 6.19049 6.20978 6.27457 6.33540 6.38461 6.40037 6.43604 6.61894 6.69569 6.79934 6.85774 6.94153 7.19868 7.58328 7.68040 7.68862 7.90729 7.96020 8.39770 8.50423 9.25767 9.86381 10.50878 11.42809 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026342 B = 0.001891 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.666191 B =14803.994749 C =14837.001054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.038 0.962 4 C 0.135 3.865 5 H 0.094 0.906 6 N -0.701 5.701 7 C 0.601 3.399 8 O -0.537 6.537 9 C -0.006 4.006 10 C -0.176 4.176 11 C 0.032 3.968 12 C 0.133 3.867 13 H 0.083 0.917 14 C -0.129 4.129 15 C -0.126 4.126 16 C 0.033 3.967 17 N -0.522 5.522 18 C 0.016 3.984 19 N -0.364 5.364 20 H 0.445 0.555 21 N -0.255 5.255 22 C -0.153 4.153 23 C 0.153 3.847 24 N -0.596 5.596 25 C -0.217 4.217 26 H 0.078 0.922 27 C -0.013 4.013 28 N -0.921 5.921 29 Si 0.914 3.086 30 H -0.280 1.280 31 H -0.291 1.291 32 H -0.291 1.291 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.404 0.596 37 H 0.160 0.840 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.033 0.967 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.014 0.986 50 H 0.109 0.891 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 12.341 -28.759 31.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.046 3.954 3 H 0.055 0.945 4 C 0.031 3.969 5 H 0.112 0.888 6 N -0.351 5.351 7 C 0.384 3.616 8 O -0.412 6.412 9 C -0.167 4.167 10 C -0.205 4.205 11 C -0.095 4.095 12 C 0.023 3.977 13 H 0.101 0.899 14 C -0.167 4.167 15 C -0.164 4.164 16 C -0.094 4.094 17 N -0.247 5.247 18 C -0.133 4.133 19 N -0.077 5.077 20 H 0.290 0.710 21 N -0.092 5.092 22 C -0.192 4.192 23 C 0.028 3.972 24 N -0.321 5.321 25 C -0.345 4.345 26 H 0.096 0.904 27 C -0.208 4.208 28 N -0.570 5.570 29 Si 0.744 3.256 30 H -0.206 1.206 31 H -0.218 1.218 32 H -0.218 1.218 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.239 0.761 37 H 0.177 0.823 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.051 0.949 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.032 0.968 50 H 0.127 0.873 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.980 12.541 -27.445 30.322 hybrid contribution -0.008 -0.008 -0.348 0.349 sum 2.972 12.533 -27.794 30.633 Atomic orbital electron populations 1.22227 0.97820 1.01437 0.99945 1.21053 0.92577 0.94882 0.86856 0.94477 1.22191 0.97722 0.90745 0.86288 0.88833 1.45935 1.67691 1.15473 1.05996 1.16858 0.77458 0.85837 0.81415 1.90780 1.49746 1.18506 1.82173 1.21987 1.08301 0.91581 0.94809 1.21475 1.07377 0.99025 0.92620 1.20982 1.06597 0.90266 0.91656 1.20871 0.93959 0.94157 0.88753 0.89914 1.22529 0.94378 0.97639 1.02199 1.22561 0.96427 0.96880 1.00496 1.23310 0.92394 1.00134 0.93576 1.64561 1.03601 1.21939 1.34555 1.22536 0.91291 1.00806 0.98649 1.43130 1.48732 1.13018 1.02863 0.71048 1.73604 1.16904 1.09845 1.08843 1.23403 0.96771 0.99347 0.99726 1.21943 0.97406 0.88322 0.89518 1.44573 1.59278 1.28171 1.00057 1.19078 1.26981 1.07924 0.80524 0.90416 1.24788 1.00544 0.97450 0.98011 1.69814 1.39344 1.17818 1.29988 0.86009 0.77295 0.77493 0.84757 1.20575 1.21833 1.21823 0.92887 0.92736 0.94255 0.76108 0.82282 0.90490 0.90290 0.90620 0.90440 0.93228 0.89567 0.90841 0.90933 0.94889 0.91903 0.91956 0.96759 0.87332 0.93805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.15 37.16 0.34 -2.66 16 2 C 0.15 3.24 3.49 -66.79 -0.23 3.00 16 3 H 0.04 0.77 7.70 -51.93 -0.40 0.37 16 4 C 0.13 2.61 2.79 -66.10 -0.18 2.43 16 5 H 0.09 1.91 7.33 -51.93 -0.38 1.53 16 6 N -0.70 -11.79 5.19 -53.02 -0.27 -12.06 16 7 C 0.60 10.30 7.82 -12.39 -0.10 10.20 16 8 O -0.54 -10.71 16.61 5.31 0.09 -10.62 16 9 C -0.01 -0.09 7.13 -82.76 -0.59 -0.68 16 10 C -0.18 -2.12 10.72 -39.36 -0.42 -2.54 16 11 C 0.03 0.30 5.86 -82.21 -0.48 -0.18 16 12 C 0.13 0.86 2.95 -67.79 -0.20 0.66 16 13 H 0.08 0.51 7.73 -51.93 -0.40 0.11 16 14 C -0.13 -0.65 6.55 -25.37 -0.17 -0.82 16 15 C -0.13 -0.48 7.08 -24.79 -0.18 -0.66 16 16 C 0.03 0.14 6.56 -1.81 -0.01 0.13 16 17 N -0.52 -3.18 5.17 -232.06 -1.20 -4.38 16 18 C 0.02 0.09 9.40 60.07 0.56 0.65 16 19 N -0.36 -3.48 6.83 33.50 0.23 -3.25 16 20 H 0.45 3.09 8.96 -190.45 -1.71 1.38 16 21 N -0.26 -3.25 11.92 33.42 0.40 -2.85 16 22 C -0.15 -3.18 6.77 -24.58 -0.17 -3.34 16 23 C 0.15 3.83 5.89 -2.53 -0.01 3.81 16 24 N -0.60 -15.20 3.14 -162.35 -0.51 -15.71 16 25 C -0.22 -5.99 9.91 -15.06 -0.15 -6.14 16 26 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 27 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 28 N -0.92 -27.03 10.09 55.49 0.56 -26.47 16 29 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 31 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 32 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 1.08 8.06 -51.93 -0.42 0.66 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.40 6.21 8.06 -40.82 -0.33 5.88 16 37 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.08 0.45 7.68 -51.93 -0.40 0.05 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.05 0.19 7.96 -51.93 -0.41 -0.22 16 43 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.03 0.16 8.01 -51.93 -0.42 -0.26 16 47 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 49 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.11 3.02 5.88 -51.93 -0.31 2.71 16 51 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 408.51 15.07 6.16 6.16 Total: -1.00 -32.72 408.51 -11.45 -44.17 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -9.79 Total: 4.40 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.08 Total: 3.42 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -0.80 Total: -64.72 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.72 -11.45 -44.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088582283.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.250 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds