Wall clock time and date at job start Wed Apr 1 2020 06:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.00006 * 2 1 4 4 C 1.54320 * 109.88149 * 238.89834 * 2 1 3 5 5 H 1.09002 * 110.72408 * 336.93523 * 4 2 1 6 6 N 1.46503 * 110.71908 * 100.03004 * 4 2 1 7 7 C 1.34771 * 119.99982 * 202.55791 * 6 4 2 8 8 O 1.21565 * 120.00443 * 0.02562 * 7 6 4 9 9 C 1.47713 * 119.99843 * 179.97438 * 7 6 4 10 10 C 1.41502 * 126.51665 * 180.28960 * 9 7 6 11 11 C 1.35367 * 105.50021 * 180.10422 * 10 9 7 12 12 C 1.50705 * 126.38335 * 179.90288 * 11 10 9 13 13 H 1.08997 * 109.90820 * 5.81206 * 12 11 10 14 14 C 1.54000 * 109.91424 * 244.71417 * 12 11 10 15 15 C 1.54598 * 105.22213 * 239.37034 * 14 12 11 16 16 C 1.55092 * 102.84998 * 338.15300 * 15 14 12 17 17 N 1.47897 * 109.92016 * 127.12600 * 12 11 10 18 18 C 1.46906 * 110.99555 * 265.19587 * 17 12 11 19 19 N 1.35032 * 107.22976 * 359.63770 * 11 10 9 20 20 H 0.96998 * 124.87980 * 180.21741 * 19 11 10 21 21 N 1.28462 * 110.23262 * 0.24443 * 19 11 10 22 22 C 1.55156 * 103.10201 * 218.48037 * 4 2 1 23 23 C 1.54908 * 101.57991 * 35.41613 * 22 4 2 24 24 N 1.47319 * 110.05942 * 121.16874 * 2 1 3 25 25 C 1.36940 * 125.61991 * 298.31775 * 24 2 1 26 26 H 1.08000 * 119.99172 * 359.80272 * 25 24 2 27 27 C 1.38803 * 120.00251 * 179.80018 * 25 24 2 28 28 N 1.31622 * 120.00067 * 0.02562 * 27 25 24 29 29 Si 1.86803 * 120.00027 * 179.97438 * 27 25 24 30 30 H 1.48504 * 109.47045 * 0.02562 * 29 27 25 31 31 H 1.48505 * 109.47081 * 120.00162 * 29 27 25 32 32 H 1.48496 * 109.47466 * 239.99980 * 29 27 25 33 33 H 1.09000 * 109.47107 * 181.10113 * 1 2 3 34 34 H 1.09000 * 109.47132 * 301.10339 * 1 2 3 35 35 H 1.09003 * 109.46931 * 61.09906 * 1 2 3 36 36 H 0.97003 * 120.00057 * 22.55814 * 6 4 2 37 37 H 1.07999 * 127.25196 * 359.97438 * 10 9 7 38 38 H 1.09002 * 110.31026 * 358.33789 * 14 12 11 39 39 H 1.09000 * 110.30915 * 120.40818 * 14 12 11 40 40 H 1.09003 * 110.72246 * 96.45403 * 15 14 12 41 41 H 1.09003 * 110.72391 * 219.72762 * 15 14 12 42 42 H 1.09003 * 110.59460 * 278.87433 * 16 15 14 43 43 H 1.08995 * 110.83386 * 155.84768 * 16 15 14 44 44 H 1.08997 * 109.47346 * 60.00077 * 18 17 12 45 45 H 1.09005 * 109.46817 * 179.97438 * 18 17 12 46 46 H 1.08998 * 109.46753 * 299.99603 * 18 17 12 47 47 H 1.08996 * 111.00410 * 153.49326 * 22 4 2 48 48 H 1.09003 * 111.00206 * 277.30203 * 22 4 2 49 49 H 1.08996 * 110.37014 * 81.83176 * 23 22 4 50 50 H 1.09004 * 110.36301 * 204.03993 * 23 22 4 51 51 H 0.97001 * 119.99810 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 1 1.3039 -1.4438 -1.6200 6 7 2.4555 0.1959 -2.2875 7 6 2.5056 -0.2028 -3.5739 8 8 2.2179 -1.3469 -3.8674 9 6 2.9091 0.7507 -4.6274 10 6 3.0030 0.4835 -6.0138 11 6 3.4085 1.6446 -6.5793 12 6 3.6611 1.8845 -8.0456 13 1 3.3708 1.0054 -8.6209 14 6 5.1517 2.1943 -8.2773 15 6 5.1790 3.6005 -8.9191 16 6 3.7529 3.7362 -9.5133 17 7 2.8965 3.0654 -8.5020 18 6 1.6085 2.6655 -9.0846 19 7 3.5388 2.5495 -5.5855 20 1 3.8152 3.4712 -5.7073 21 7 3.2446 2.0138 -4.4556 22 6 3.2869 -1.5178 -0.6956 23 6 2.8160 -1.8831 0.7342 24 7 2.0353 -0.7162 1.1841 25 6 1.8129 -0.3592 2.4873 26 1 1.2243 0.5175 2.7139 27 6 2.3437 -1.1240 3.5167 28 7 3.0614 -2.1922 3.2404 29 14 2.0408 -0.6365 5.2944 30 1 1.2106 0.5941 5.3356 31 1 1.3301 -1.7362 5.9951 32 1 3.3403 -0.3802 5.9658 33 1 -0.3633 -1.0275 0.0197 34 1 -0.3633 0.5309 0.8799 35 1 -0.3633 0.4967 -0.8997 36 1 2.6848 1.1089 -2.0534 37 1 2.7969 -0.4507 -6.5150 38 1 5.6887 2.2008 -7.3287 39 1 5.5897 1.4609 -8.9543 40 1 5.3562 4.3660 -8.1635 41 1 5.9326 3.6512 -9.7050 42 1 3.6873 3.2243 -10.4734 43 1 3.4748 4.7849 -9.6182 44 1 1.0197 2.1360 -8.3356 45 1 1.0665 3.5530 -9.4116 46 1 1.7836 2.0111 -9.9385 47 1 3.4811 -2.4145 -1.2841 48 1 4.1665 -0.8747 -0.6656 49 1 2.1879 -2.7736 0.7109 50 1 3.6742 -2.0421 1.3872 51 1 3.4327 -2.7264 3.9599 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088582283.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:52 Heat of formation + Delta-G solvation = 48.883769 kcal Electronic energy + Delta-G solvation = -30493.095743 eV Core-core repulsion = 26428.661473 eV Total energy + Delta-G solvation = -4064.434270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.74078 -40.84395 -39.83524 -39.05227 -35.61941 -33.95703 -33.21609 -32.80660 -32.69367 -32.03472 -30.44545 -28.80727 -26.90374 -26.51446 -25.87159 -24.63907 -22.87287 -22.18228 -22.03093 -21.80981 -21.52672 -20.67779 -18.78503 -18.63285 -17.97829 -17.37949 -16.98488 -16.70437 -16.59589 -16.10615 -15.71910 -15.60649 -15.45446 -15.28020 -14.92080 -14.61908 -14.55513 -14.36707 -14.15814 -13.99539 -13.71516 -13.38432 -13.23662 -12.93193 -12.74837 -12.68060 -12.62419 -12.49197 -12.38174 -12.24230 -12.11854 -12.03136 -11.94434 -11.92906 -11.57576 -11.54275 -11.45268 -11.21878 -10.73078 -10.45923 -10.02087 -9.99088 -9.56482 -8.88985 -7.73380 -5.18440 0.51880 1.06827 1.48923 1.49801 1.59934 1.84102 2.19408 2.35231 2.53244 2.92722 3.34612 3.37360 3.56998 3.60900 3.64090 3.84771 3.89863 3.96305 4.07789 4.16417 4.21797 4.34225 4.44422 4.50589 4.51985 4.55723 4.60837 4.62210 4.67725 4.78370 4.81117 4.82163 4.93810 4.94885 5.02421 5.05675 5.06753 5.12187 5.15477 5.25346 5.28952 5.34748 5.51426 5.59712 5.61288 5.80583 5.81289 5.94823 6.10308 6.31547 6.47312 6.89566 7.12565 7.16201 7.79410 8.43607 9.28799 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026342 B = 0.001891 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.666191 B =14803.994749 C =14837.001054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.049 0.951 4 C 0.152 3.848 5 H 0.085 0.915 6 N -0.693 5.693 7 C 0.602 3.398 8 O -0.570 6.570 9 C -0.031 4.031 10 C -0.193 4.193 11 C 0.055 3.945 12 C 0.133 3.867 13 H 0.089 0.911 14 C -0.127 4.127 15 C -0.121 4.121 16 C 0.034 3.966 17 N -0.532 5.532 18 C 0.016 3.984 19 N -0.347 5.347 20 H 0.458 0.542 21 N -0.263 5.263 22 C -0.138 4.138 23 C 0.159 3.841 24 N -0.613 5.613 25 C -0.224 4.224 26 H 0.085 0.915 27 C -0.071 4.071 28 N -0.951 5.951 29 Si 0.980 3.020 30 H -0.265 1.265 31 H -0.296 1.296 32 H -0.293 1.293 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.413 0.587 37 H 0.162 0.838 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.042 0.958 47 H 0.068 0.932 48 H 0.067 0.933 49 H -0.012 1.012 50 H 0.079 0.921 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 14.838 -30.911 34.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.067 0.933 4 C 0.046 3.954 5 H 0.103 0.897 6 N -0.344 5.344 7 C 0.388 3.612 8 O -0.447 6.447 9 C -0.191 4.191 10 C -0.222 4.222 11 C -0.073 4.073 12 C 0.023 3.977 13 H 0.106 0.894 14 C -0.165 4.165 15 C -0.159 4.159 16 C -0.093 4.093 17 N -0.257 5.257 18 C -0.132 4.132 19 N -0.063 5.063 20 H 0.306 0.694 21 N -0.101 5.101 22 C -0.178 4.178 23 C 0.033 3.967 24 N -0.339 5.339 25 C -0.353 4.353 26 H 0.103 0.897 27 C -0.263 4.263 28 N -0.601 5.601 29 Si 0.808 3.192 30 H -0.189 1.189 31 H -0.223 1.223 32 H -0.220 1.220 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.250 0.750 37 H 0.180 0.820 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.006 0.994 50 H 0.097 0.903 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.127 15.102 -29.628 33.402 hybrid contribution -0.047 -0.709 0.197 0.738 sum 3.081 14.392 -29.431 32.906 Atomic orbital electron populations 1.22108 0.96289 1.00934 1.01172 1.21232 0.93658 0.94939 0.85795 0.93349 1.21809 0.96508 0.90714 0.86355 0.89709 1.45746 1.67721 1.15364 1.05528 1.17184 0.76470 0.85863 0.81656 1.90757 1.51205 1.20090 1.82682 1.21633 1.10626 0.91968 0.94834 1.21620 1.08451 1.00272 0.91876 1.21313 1.04097 0.89048 0.92860 1.20959 0.95220 0.94879 0.86679 0.89353 1.22525 0.92945 0.98839 1.02226 1.22568 0.96533 0.95953 1.00832 1.23364 0.92182 1.00326 0.93392 1.64521 1.03925 1.21620 1.35629 1.22525 0.91085 1.01191 0.98448 1.43189 1.47234 1.13618 1.02234 0.69446 1.73532 1.17181 1.09234 1.10132 1.23209 0.97487 0.99952 0.97169 1.21667 0.95831 0.87799 0.91396 1.44804 1.59762 1.28506 1.00810 1.19435 1.26330 1.07886 0.81670 0.89707 1.25631 1.00952 0.97777 1.01988 1.70054 1.40506 1.18891 1.30656 0.84981 0.76982 0.77404 0.79791 1.18932 1.22322 1.21991 0.94188 0.93196 0.91324 0.75034 0.82030 0.91288 0.89221 0.90503 0.89041 0.92488 0.88939 0.92407 0.90216 0.93969 0.91294 0.91470 0.99376 0.90334 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.15 71.98 0.66 -4.84 16 2 C 0.15 6.23 3.49 45.28 0.16 6.39 16 3 H 0.05 1.93 7.70 -2.39 -0.02 1.91 16 4 C 0.15 5.83 2.79 46.18 0.13 5.96 16 5 H 0.08 3.47 7.33 -2.39 -0.02 3.45 16 6 N -0.69 -22.78 5.19 -439.92 -2.28 -25.06 16 7 C 0.60 20.45 7.82 86.75 0.68 21.13 16 8 O -0.57 -22.86 16.61 -3.92 -0.07 -22.92 16 9 C -0.03 -0.88 7.13 42.46 0.30 -0.58 16 10 C -0.19 -4.47 10.72 22.41 0.24 -4.23 16 11 C 0.05 0.92 5.86 41.40 0.24 1.17 16 12 C 0.13 1.42 2.95 44.32 0.13 1.55 16 13 H 0.09 0.89 7.73 -2.39 -0.02 0.87 16 14 C -0.13 -0.94 6.55 31.48 0.21 -0.74 16 15 C -0.12 -0.56 7.08 31.85 0.23 -0.33 16 16 C 0.03 0.19 6.56 86.70 0.57 0.76 16 17 N -0.53 -5.17 5.17 -888.09 -4.59 -9.76 16 18 C 0.02 0.15 9.40 127.69 1.20 1.35 16 19 N -0.35 -5.97 6.83 -47.93 -0.33 -6.30 16 20 H 0.46 5.26 8.96 -220.00 -1.97 3.28 16 21 N -0.26 -6.32 11.92 -48.17 -0.57 -6.89 16 22 C -0.14 -5.83 6.77 31.99 0.22 -5.61 16 23 C 0.16 8.20 5.89 86.86 0.51 8.71 16 24 N -0.61 -31.69 3.14 -667.57 -2.10 -33.79 16 25 C -0.22 -12.47 9.91 84.03 0.83 -11.64 16 26 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 27 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 28 N -0.95 -57.51 10.09 21.65 0.22 -57.29 16 29 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 30 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 31 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 32 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.41 12.16 8.06 -92.71 -0.75 11.42 16 37 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.07 0.65 7.68 -2.39 -0.02 0.63 16 39 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.06 0.26 7.96 -2.39 -0.02 0.24 16 43 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 46 H 0.04 0.32 8.01 -2.39 -0.02 0.30 16 47 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 48 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 49 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 50 H 0.08 4.57 5.88 -2.39 -0.01 4.55 16 51 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -71.58 408.51 -2.69 -74.27 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -1.77 Total: 24.15 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.77 Total: 15.44 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -9.65 Total: -139.10 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.07 Total: -22.92 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -71.58 -2.69 -74.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088582283.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.154 kcal (2) G-P(sol) polarization free energy of solvation -71.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds