Wall clock time and date at job start Wed Apr 1 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46768 * 2 1 4 4 C 1.53005 * 109.47232 * 240.00581 * 2 1 3 5 5 C 1.52996 * 109.47126 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46891 * 60.00026 * 5 4 2 7 7 C 1.52999 * 109.47476 * 299.99499 * 6 5 4 8 8 H 1.09005 * 109.46983 * 300.00603 * 7 6 5 9 9 C 1.50694 * 109.47546 * 180.02562 * 7 6 5 10 10 O 1.21284 * 120.00308 * 240.00314 * 9 7 6 11 11 N 1.34776 * 120.00279 * 60.00306 * 9 7 6 12 12 C 1.46500 * 120.00499 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47207 * 180.02562 * 12 11 9 14 14 C 1.35347 * 126.75515 * 94.99691 * 13 12 11 15 15 N 1.35308 * 106.17713 * 180.02562 * 14 13 12 16 16 C 1.46499 * 125.86944 * 180.02562 * 15 14 13 17 17 C 1.53937 * 113.74217 * 13.73654 * 16 15 14 18 18 N 1.47816 * 86.04045 * 222.08502 * 17 16 15 19 19 C 1.36936 * 134.46045 * 204.64375 * 18 17 16 20 20 H 1.08006 * 119.99878 * 179.86884 * 19 18 17 21 21 C 1.38804 * 119.99927 * 359.86444 * 19 18 17 22 22 N 1.31616 * 120.00171 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99738 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47182 * 60.00404 * 23 21 19 25 25 H 1.48503 * 109.46859 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47209 * 299.99888 * 23 21 19 27 27 C 1.47582 * 91.04708 * 24.54960 * 18 17 16 28 28 N 1.28720 * 108.26434 * 359.97438 * 15 14 13 29 29 N 1.28637 * 110.17708 * 0.02562 * 28 15 14 30 30 C 1.53001 * 109.47515 * 120.00086 * 2 1 3 31 31 H 1.09005 * 109.46768 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47100 * 299.99497 * 1 2 3 33 33 H 1.08995 * 109.47265 * 60.00008 * 1 2 3 34 34 H 1.08996 * 109.46960 * 59.99473 * 4 2 1 35 35 H 1.08995 * 109.46681 * 299.99997 * 4 2 1 36 36 H 1.09000 * 109.47325 * 300.00093 * 5 4 2 37 37 H 1.09004 * 109.47170 * 179.97438 * 5 4 2 38 38 H 1.09007 * 109.46922 * 179.97438 * 6 5 4 39 39 H 1.08997 * 109.47815 * 59.99966 * 6 5 4 40 40 H 0.97004 * 119.99586 * 359.97438 * 11 9 7 41 41 H 1.09000 * 109.47031 * 59.99825 * 12 11 9 42 42 H 1.09004 * 109.46732 * 299.99913 * 12 11 9 43 43 H 1.07997 * 126.91128 * 0.02562 * 14 13 12 44 44 H 1.09002 * 112.94832 * 145.32772 * 16 15 14 45 45 H 1.08996 * 113.77163 * 336.34772 * 17 16 15 46 46 H 1.08998 * 113.77351 * 107.75266 * 17 16 15 47 47 H 0.97003 * 119.99809 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.77111 * 221.15325 * 27 18 17 49 49 H 1.08998 * 113.87659 * 89.76380 * 27 18 17 50 50 H 1.09000 * 109.46747 * 60.00299 * 30 2 1 51 51 H 1.08996 * 109.47277 * 300.00309 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0005 7 6 3.5706 -0.7204 1.2489 8 1 3.9335 0.3074 1.2487 9 6 4.0738 -1.4302 2.4792 10 8 3.2864 -1.8915 3.2780 11 7 5.3991 -1.5524 2.6921 12 6 5.8884 -2.2429 3.8879 13 6 7.3954 -2.2412 3.8877 14 6 8.2044 -1.3522 4.5099 15 7 9.4715 -1.7399 4.2363 16 6 10.6917 -1.0756 4.7010 17 6 10.4508 -0.0539 5.8270 18 7 11.4071 0.8125 5.1060 19 6 12.2354 1.8395 5.4723 20 1 12.8562 2.3228 4.7324 21 6 12.2770 2.2595 6.7946 22 7 11.5208 1.6704 7.6964 23 14 13.4075 3.6601 7.2945 24 1 13.0407 4.8856 6.5403 25 1 13.2659 3.9148 8.7507 26 1 14.8140 3.2938 6.9900 27 6 11.1126 0.1248 3.8338 28 7 9.4206 -2.7934 3.4984 29 7 8.1966 -3.1180 3.2723 30 6 2.0401 -0.7213 1.2492 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6767 -0.2073 -2.1392 35 1 1.6767 -1.7487 -1.2494 36 1 3.9330 0.3072 -1.2497 37 1 3.9334 -1.2347 -2.1395 38 1 5.1705 -1.4416 -0.0009 39 1 3.7176 -2.4694 -0.0003 40 1 6.0289 -1.1838 2.0530 41 1 5.5258 -3.2708 3.8878 42 1 5.5249 -1.7295 4.7781 43 1 7.8998 -0.5040 5.1049 44 1 11.5031 -1.7734 4.9079 45 1 9.4347 0.3398 5.8529 46 1 10.8054 -0.3842 6.8033 47 1 11.5496 1.9642 8.6204 48 1 11.9946 -0.0633 3.2216 49 1 10.2917 0.5697 3.2715 50 1 1.6768 -1.7489 1.2491 51 1 1.6768 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094314676.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:18 Heat of formation + Delta-G solvation = 90.109337 kcal Electronic energy + Delta-G solvation = -29993.857386 eV Core-core repulsion = 25931.210791 eV Total energy + Delta-G solvation = -4062.646595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.09694 -40.37743 -38.42931 -38.16970 -35.25738 -33.50407 -33.06895 -31.99465 -31.49722 -30.93187 -28.00319 -27.08386 -26.51416 -25.30865 -24.42779 -23.59239 -22.02025 -21.95800 -21.11059 -20.40407 -19.95978 -19.64276 -17.64903 -17.15633 -16.65115 -16.42311 -15.79068 -15.53291 -15.26711 -15.13787 -14.81051 -14.66501 -14.33017 -14.19940 -14.11462 -13.63772 -13.41347 -13.09448 -12.97728 -12.74525 -12.64773 -12.22598 -12.13640 -12.11955 -11.88366 -11.82386 -11.47382 -11.40373 -11.29145 -11.20391 -10.99403 -10.96241 -10.83114 -10.73877 -10.55734 -10.39376 -10.28662 -9.93947 -9.87461 -9.58061 -9.17162 -9.12058 -9.05893 -7.29042 -6.07283 -3.42899 1.79098 2.41470 2.54677 2.61583 3.24932 3.29504 3.30710 3.33453 4.19685 4.31444 4.32034 4.36144 4.36934 4.68661 4.71116 4.76944 4.77417 4.86231 4.93095 5.01253 5.10834 5.12683 5.17178 5.17820 5.26239 5.36097 5.37912 5.41977 5.51328 5.53379 5.59974 5.65987 5.69431 5.73615 5.80406 5.87833 5.89725 5.93914 6.02094 6.04033 6.07835 6.13481 6.17904 6.26871 6.29321 6.50740 6.76586 7.00020 7.13222 7.38943 7.64761 8.11445 8.70973 8.72770 9.39084 10.16320 11.09855 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.001932 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.114634 B =14485.764427 C =15225.133595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.106 4.106 8 H 0.097 0.903 9 C 0.518 3.482 10 O -0.542 6.542 11 N -0.723 5.723 12 C 0.214 3.786 13 C -0.063 4.063 14 C -0.015 4.015 15 N -0.265 5.265 16 C 0.077 3.923 17 C 0.164 3.836 18 N -0.598 5.598 19 C -0.234 4.234 20 H 0.087 0.913 21 C -0.001 4.001 22 N -0.919 5.919 23 Si 0.920 3.080 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.281 1.281 27 C 0.120 3.880 28 N -0.089 5.089 29 N -0.267 5.267 30 C -0.093 4.093 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.191 0.809 44 H 0.132 0.868 45 H 0.041 0.959 46 H 0.092 0.908 47 H 0.260 0.740 48 H 0.062 0.938 49 H 0.042 0.958 50 H 0.070 0.930 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.926 -4.073 -14.497 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.088 0.912 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.149 4.149 7 C -0.127 4.127 8 H 0.115 0.885 9 C 0.305 3.695 10 O -0.419 6.419 11 N -0.375 5.375 12 C 0.089 3.911 13 C -0.202 4.202 14 C -0.169 4.169 15 N -0.057 5.057 16 C -0.025 4.025 17 C 0.037 3.963 18 N -0.325 5.325 19 C -0.360 4.360 20 H 0.105 0.895 21 C -0.198 4.198 22 N -0.565 5.565 23 Si 0.749 3.251 24 H -0.209 1.209 25 H -0.213 1.213 26 H -0.207 1.207 27 C -0.007 4.007 28 N -0.068 5.068 29 N -0.134 5.134 30 C -0.131 4.131 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.237 0.763 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.208 0.792 44 H 0.150 0.850 45 H 0.059 0.941 46 H 0.110 0.890 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.060 0.940 50 H 0.089 0.911 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.449 -5.251 -14.395 22.480 hybrid contribution 0.513 1.890 0.720 2.087 sum -15.936 -3.361 -13.674 21.266 Atomic orbital electron populations 1.21811 0.95078 1.01907 1.01627 1.21168 0.95633 0.99620 0.94763 0.91160 1.21627 0.95382 1.00863 0.97490 1.21528 0.95779 1.00856 0.97410 1.21537 1.00591 0.99741 0.93018 1.21366 0.97971 1.00599 0.92791 0.88498 1.20656 0.81851 0.79611 0.87419 1.90701 1.55329 1.48649 1.47199 1.46094 1.07160 1.58755 1.25496 1.19275 0.84894 0.98621 0.88267 1.21732 0.96818 0.96876 1.04731 1.23503 0.84025 1.03627 1.05730 1.47912 1.08203 1.18278 1.31328 1.25290 0.83236 0.93708 1.00263 1.22745 0.93885 0.84703 0.94981 1.45661 1.45234 1.39260 1.02325 1.18951 1.15584 1.08064 0.93434 0.89539 1.24853 0.99558 0.99786 0.95633 1.69749 1.41425 1.43169 1.02140 0.86087 0.80108 0.81347 0.77553 1.20865 1.21305 1.20727 1.22926 0.98474 0.88095 0.91214 1.78274 1.15368 1.02018 1.11142 1.75021 0.95671 1.22829 1.19868 1.21406 0.92186 1.01813 0.97647 0.92640 0.92579 0.92771 0.91993 0.91856 0.91696 0.91576 0.91367 0.91255 0.76342 0.89836 0.89697 0.79245 0.85035 0.94104 0.89017 0.93019 0.91976 0.93997 0.91140 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 2 C -0.09 -0.63 2.72 -90.62 -0.25 -0.88 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.12 -0.72 5.20 -26.73 -0.14 -0.86 16 5 C -0.12 -0.74 5.92 -26.73 -0.16 -0.89 16 6 C -0.11 -0.81 5.10 -26.73 -0.14 -0.95 16 7 C -0.11 -0.89 2.53 -91.75 -0.23 -1.12 16 8 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 9 C 0.52 5.90 7.15 -10.99 -0.08 5.82 16 10 O -0.54 -8.09 15.98 5.55 0.09 -8.00 16 11 N -0.72 -7.72 5.44 -61.47 -0.33 -8.06 16 12 C 0.21 2.56 6.23 -5.19 -0.03 2.53 16 13 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 14 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 15 N -0.26 -4.25 3.54 -56.30 -0.20 -4.45 16 16 C 0.08 1.31 5.14 -70.14 -0.36 0.95 16 17 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 18 N -0.60 -13.64 3.70 -177.87 -0.66 -14.30 16 19 C -0.23 -5.96 10.70 -15.06 -0.16 -6.12 16 20 H 0.09 2.12 7.83 -52.48 -0.41 1.71 16 21 C 0.00 -0.02 5.50 -17.43 -0.10 -0.11 16 22 N -0.92 -24.93 11.39 55.49 0.63 -24.30 16 23 Si 0.92 20.55 29.55 -169.99 -5.02 15.52 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.12 2.19 8.74 -2.96 -0.03 2.16 16 28 N -0.09 -1.53 13.17 60.35 0.79 -0.73 16 29 N -0.27 -4.39 12.41 33.29 0.41 -3.97 16 30 C -0.09 -0.79 3.78 -26.71 -0.10 -0.89 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.40 3.81 7.88 -40.82 -0.32 3.48 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.19 2.40 6.73 -52.49 -0.35 2.05 16 44 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 45 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 46 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 47 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 51 H 0.07 0.67 8.10 -51.93 -0.42 0.24 16 LS Contribution 408.77 15.07 6.16 6.16 Total: -1.00 -30.05 408.77 -8.80 -38.84 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -8.50 Total: 2.76 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.18 Total: 0.52 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.65 Total: -55.82 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.09 Total: -8.00 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.05 -8.80 -38.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094314676.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.954 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds