Wall clock time and date at job start Wed Apr 1 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47774 * 2 1 4 4 C 1.53005 * 109.47190 * 120.00179 * 2 1 3 5 5 C 1.53003 * 109.47146 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47116 * 300.00199 * 5 4 2 7 7 C 1.52999 * 109.47172 * 60.00158 * 6 5 4 8 8 H 1.09001 * 109.47225 * 59.99555 * 7 6 5 9 9 C 1.50696 * 109.47205 * 180.02562 * 7 6 5 10 10 O 1.21281 * 120.00583 * 119.99878 * 9 7 6 11 11 N 1.34782 * 119.99788 * 299.99380 * 9 7 6 12 12 C 1.47577 * 134.49169 * 179.97438 * 11 9 7 13 13 C 1.53942 * 86.11475 * 155.36499 * 12 11 9 14 14 N 1.46498 * 113.74444 * 137.95486 * 13 12 11 15 15 C 1.35313 * 125.87024 * 276.92422 * 14 13 12 16 16 C 1.35345 * 106.18104 * 179.97438 * 15 14 13 17 17 C 1.50700 * 126.75544 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.46769 * 95.00431 * 17 16 15 19 19 C 1.36943 * 119.99752 * 179.72432 * 18 17 16 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47294 * 90.00155 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00015 * 23 21 19 26 26 H 1.48496 * 109.47166 * 329.99846 * 23 21 19 27 27 N 1.33776 * 106.49291 * 0.26875 * 16 15 14 28 28 N 1.28628 * 108.88461 * 359.55705 * 27 16 15 29 29 C 1.47816 * 134.45419 * 359.87255 * 11 9 7 30 30 C 1.53001 * 109.47092 * 240.00146 * 2 1 3 31 31 H 1.09003 * 109.46929 * 300.00063 * 1 2 3 32 32 H 1.09002 * 109.47421 * 59.99219 * 1 2 3 33 33 H 1.08997 * 109.47774 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46948 * 60.00039 * 4 2 1 35 35 H 1.08998 * 109.47423 * 299.99897 * 4 2 1 36 36 H 1.08996 * 109.47332 * 180.02562 * 5 4 2 37 37 H 1.09001 * 109.46838 * 60.00373 * 5 4 2 38 38 H 1.08993 * 109.47300 * 300.00138 * 6 5 4 39 39 H 1.09002 * 109.47089 * 179.97438 * 6 5 4 40 40 H 1.08994 * 113.76961 * 41.06350 * 12 11 9 41 41 H 1.09003 * 113.87160 * 269.67650 * 12 11 9 42 42 H 1.08999 * 113.74459 * 269.15237 * 13 12 11 43 43 H 1.08006 * 126.90932 * 359.93985 * 15 14 13 44 44 H 1.09004 * 109.47210 * 335.00789 * 17 16 15 45 45 H 1.08994 * 109.47121 * 215.00759 * 17 16 15 46 46 H 0.97001 * 120.00384 * 0.02562 * 18 17 16 47 47 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 48 48 H 1.08997 * 113.76910 * 90.37778 * 29 11 9 49 49 H 1.08997 * 113.83607 * 318.91325 * 29 11 9 50 50 H 1.09000 * 109.47183 * 60.00237 * 30 2 1 51 51 H 1.09001 * 109.47283 * 300.00106 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7219 1.2489 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7221 -1.2496 8 1 3.9332 0.3055 -1.2497 9 6 4.0708 -1.4331 -2.4801 10 8 3.2821 -1.8937 -3.2780 11 7 5.3957 -1.5572 -2.6939 12 6 6.2193 -2.1704 -3.7539 13 6 7.3197 -1.1830 -3.3249 14 7 8.6572 -1.7782 -3.2690 15 6 9.1672 -2.4868 -2.2351 16 6 10.4193 -2.8443 -2.6041 17 6 11.4035 -3.6478 -1.7936 18 7 11.3090 -5.0601 -2.1713 19 6 12.1174 -5.9859 -1.5673 20 1 12.8213 -5.6754 -0.8093 21 6 12.0320 -7.3233 -1.9292 22 7 11.1744 -7.7014 -2.8534 23 14 13.1341 -8.5862 -1.1048 24 1 12.4537 -9.1257 0.0999 25 1 13.4132 -9.6940 -2.0534 26 1 14.4115 -7.9429 -0.7054 27 7 10.6138 -2.3385 -3.8272 28 7 9.5491 -1.7175 -4.1950 29 6 6.6069 -1.1316 -1.9612 30 6 2.0399 -0.7212 -1.2493 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.6766 -1.7490 1.2492 35 1 1.6767 -0.2075 2.1393 36 1 3.9334 -1.2361 2.1386 37 1 3.9337 0.3057 1.2488 38 1 3.7158 -2.4709 -0.0003 39 1 5.1695 -1.4434 -0.0009 40 1 5.8406 -1.9957 -4.7609 41 1 6.4699 -3.2150 -3.5690 42 1 7.2976 -0.2381 -3.8678 43 1 8.6743 -2.7196 -1.3027 44 1 11.1753 -3.5392 -0.7333 45 1 12.4136 -3.2867 -1.9867 46 1 10.6771 -5.3389 -2.8523 47 1 11.1145 -8.6360 -3.1060 48 1 6.9707 -1.8705 -1.2472 49 1 6.5370 -0.1290 -1.5393 50 1 1.6766 -0.2074 -2.1392 51 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105313430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:06 Heat of formation + Delta-G solvation = 96.972436 kcal Electronic energy + Delta-G solvation = -30228.047667 eV Core-core repulsion = 26165.698679 eV Total energy + Delta-G solvation = -4062.348989 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.15214 -41.03260 -39.29560 -37.81420 -35.02218 -33.69416 -33.13074 -31.86980 -31.52156 -29.98027 -29.33642 -27.19960 -26.66366 -25.90449 -24.64958 -23.09706 -22.83586 -22.13671 -21.07177 -20.67077 -20.21658 -19.40739 -17.90830 -17.47874 -17.05153 -16.59929 -16.05291 -15.67959 -15.23984 -15.02504 -14.89230 -14.68171 -14.46203 -14.09280 -13.91791 -13.84740 -13.53429 -13.32145 -13.27272 -13.04500 -12.86300 -12.70238 -12.61260 -12.26953 -12.10755 -11.99289 -11.78470 -11.63298 -11.45019 -11.30968 -10.98564 -10.91427 -10.90523 -10.81624 -10.57646 -10.50932 -10.11750 -10.06056 -9.92324 -9.74825 -9.30997 -8.93156 -8.88176 -6.93245 -5.74913 -3.04850 1.68127 1.89324 2.12580 2.61705 2.84538 3.44501 3.44996 3.50304 3.52455 3.65188 4.08301 4.16491 4.18590 4.26608 4.48163 4.59613 4.60423 4.62802 4.64277 4.70664 4.79259 4.82166 4.94404 4.95596 5.05793 5.08993 5.14572 5.19190 5.23565 5.30407 5.34664 5.40221 5.43565 5.52363 5.54403 5.60147 5.65095 5.72912 5.74351 5.75514 5.80491 5.87707 6.03603 6.15106 6.34484 6.60769 6.65503 6.74445 7.07843 7.68262 7.70161 8.42169 8.76260 9.54016 10.09273 10.44933 11.47718 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013074 B = 0.002069 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.166307 B =13531.119701 C =14558.428882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.117 4.117 6 C -0.114 4.114 7 C -0.099 4.099 8 H 0.097 0.903 9 C 0.547 3.453 10 O -0.529 6.529 11 N -0.643 5.643 12 C 0.103 3.897 13 C 0.113 3.887 14 N -0.295 5.295 15 C -0.047 4.047 16 C 0.000 4.000 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 N -0.250 5.250 28 N -0.090 5.090 29 C 0.099 3.901 30 C -0.095 4.095 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.145 0.855 43 H 0.188 0.812 44 H 0.038 0.962 45 H 0.040 0.960 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.070 0.930 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.848 21.105 8.399 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.120 4.120 8 H 0.116 0.884 9 C 0.337 3.663 10 O -0.404 6.404 11 N -0.381 5.381 12 C -0.021 4.021 13 C 0.009 3.991 14 N -0.089 5.089 15 C -0.196 4.196 16 C -0.137 4.137 17 C 0.103 3.897 18 N -0.371 5.371 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.118 5.118 28 N -0.069 5.069 29 C -0.025 4.025 30 C -0.133 4.133 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.163 0.837 43 H 0.205 0.795 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.088 0.912 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.061 21.335 6.682 30.715 hybrid contribution 0.049 -1.292 1.171 1.745 sum -21.012 20.042 7.853 30.081 Atomic orbital electron populations 1.21813 0.94928 1.02046 1.01699 1.21149 0.95768 0.99504 0.94594 0.91154 1.21644 0.95332 1.01020 0.97513 1.21521 0.95851 1.00750 0.97341 1.21590 1.00669 0.99926 0.92958 1.21314 0.98030 1.00395 0.92276 0.88448 1.20446 0.79261 0.79248 0.87306 1.90743 1.53569 1.48786 1.47271 1.49736 1.03953 1.58296 1.26090 1.23605 0.85770 0.98299 0.94376 1.23695 0.76675 0.99085 0.99661 1.47114 1.12807 1.36699 1.12317 1.23303 0.96843 1.02797 0.96691 1.22493 0.95489 1.02018 0.93746 1.18964 0.93225 0.84246 0.93295 1.42305 1.46758 1.00030 1.47966 1.19222 1.14104 0.87735 1.16088 0.90863 1.24769 0.99684 0.97213 0.99263 1.69682 1.38656 1.16047 1.33578 0.86154 0.80084 0.81361 0.78357 1.21742 1.21798 1.20655 1.75130 1.15424 1.09515 1.11708 1.78304 0.94133 1.20167 1.14252 1.23710 0.81465 1.02934 0.94355 1.21433 0.91874 1.02071 0.97903 0.92630 0.92585 0.92549 0.91741 0.91787 0.91298 0.91697 0.91148 0.91319 0.88111 0.88227 0.83731 0.79496 0.94434 0.94251 0.78105 0.93493 0.87803 0.87779 0.91154 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.19 37.15 0.34 -0.43 16 2 C -0.09 -0.50 2.72 -90.62 -0.25 -0.74 16 3 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 4 C -0.12 -0.60 5.20 -26.73 -0.14 -0.74 16 5 C -0.12 -0.56 5.92 -26.73 -0.16 -0.72 16 6 C -0.11 -0.66 5.08 -26.73 -0.14 -0.80 16 7 C -0.10 -0.66 2.36 -91.80 -0.22 -0.88 16 8 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 9 C 0.55 5.42 7.38 -10.98 -0.08 5.34 16 10 O -0.53 -7.46 16.71 5.56 0.09 -7.36 16 11 N -0.64 -5.32 3.57 -178.36 -0.64 -5.96 16 12 C 0.10 0.95 8.64 -2.97 -0.03 0.92 16 13 C 0.11 0.91 5.14 -70.15 -0.36 0.55 16 14 N -0.29 -3.70 3.54 -56.30 -0.20 -3.90 16 15 C -0.05 -0.63 10.72 -17.05 -0.18 -0.81 16 16 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 17 C 0.23 4.69 6.82 -5.19 -0.04 4.66 16 18 N -0.73 -18.61 5.59 -61.09 -0.34 -18.95 16 19 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 N -0.25 -4.89 12.41 33.29 0.41 -4.48 16 28 N -0.09 -1.50 13.16 60.35 0.79 -0.71 16 29 C 0.10 0.56 6.27 -2.83 -0.02 0.54 16 30 C -0.09 -0.68 3.77 -26.75 -0.10 -0.78 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.34 6.13 -51.93 -0.32 0.02 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.15 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.19 1.86 6.73 -52.48 -0.35 1.51 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.39 10.70 7.66 -40.82 -0.31 10.39 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.10 0.54 6.13 -51.93 -0.32 0.22 16 49 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 51 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 409.51 15.07 6.17 6.17 Total: -1.00 -35.98 409.51 -8.61 -44.59 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.45 Total: 2.82 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.15 Total: -1.76 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.75 Total: -61.82 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: 0.09 Total: -7.36 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.98 -8.61 -44.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105313430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.567 kcal (2) G-P(sol) polarization free energy of solvation -35.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds