Wall clock time and date at job start Wed Apr 1 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47774 * 2 1 4 4 C 1.53005 * 109.47190 * 120.00179 * 2 1 3 5 5 C 1.53003 * 109.47146 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47116 * 300.00199 * 5 4 2 7 7 C 1.52999 * 109.47172 * 60.00158 * 6 5 4 8 8 H 1.09001 * 109.47225 * 59.99555 * 7 6 5 9 9 C 1.50696 * 109.47205 * 180.02562 * 7 6 5 10 10 O 1.21281 * 120.00583 * 119.99878 * 9 7 6 11 11 N 1.34782 * 119.99788 * 299.99380 * 9 7 6 12 12 C 1.47577 * 134.49169 * 179.97438 * 11 9 7 13 13 C 1.53942 * 86.11475 * 155.36499 * 12 11 9 14 14 N 1.46498 * 113.74444 * 137.95486 * 13 12 11 15 15 C 1.35313 * 125.87024 * 276.92422 * 14 13 12 16 16 C 1.35345 * 106.18104 * 179.97438 * 15 14 13 17 17 C 1.50700 * 126.75544 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.46769 * 95.00431 * 17 16 15 19 19 C 1.36943 * 119.99752 * 179.72432 * 18 17 16 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47294 * 90.00155 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00015 * 23 21 19 26 26 H 1.48496 * 109.47166 * 329.99846 * 23 21 19 27 27 N 1.33776 * 106.49291 * 0.26875 * 16 15 14 28 28 N 1.28628 * 108.88461 * 359.55705 * 27 16 15 29 29 C 1.47816 * 134.45419 * 359.87255 * 11 9 7 30 30 C 1.53001 * 109.47092 * 240.00146 * 2 1 3 31 31 H 1.09003 * 109.46929 * 300.00063 * 1 2 3 32 32 H 1.09002 * 109.47421 * 59.99219 * 1 2 3 33 33 H 1.08997 * 109.47774 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46948 * 60.00039 * 4 2 1 35 35 H 1.08998 * 109.47423 * 299.99897 * 4 2 1 36 36 H 1.08996 * 109.47332 * 180.02562 * 5 4 2 37 37 H 1.09001 * 109.46838 * 60.00373 * 5 4 2 38 38 H 1.08993 * 109.47300 * 300.00138 * 6 5 4 39 39 H 1.09002 * 109.47089 * 179.97438 * 6 5 4 40 40 H 1.08994 * 113.76961 * 41.06350 * 12 11 9 41 41 H 1.09003 * 113.87160 * 269.67650 * 12 11 9 42 42 H 1.08999 * 113.74459 * 269.15237 * 13 12 11 43 43 H 1.08006 * 126.90932 * 359.93985 * 15 14 13 44 44 H 1.09004 * 109.47210 * 335.00789 * 17 16 15 45 45 H 1.08994 * 109.47121 * 215.00759 * 17 16 15 46 46 H 0.97001 * 120.00384 * 0.02562 * 18 17 16 47 47 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 48 48 H 1.08997 * 113.76910 * 90.37778 * 29 11 9 49 49 H 1.08997 * 113.83607 * 318.91325 * 29 11 9 50 50 H 1.09000 * 109.47183 * 60.00237 * 30 2 1 51 51 H 1.09001 * 109.47283 * 300.00106 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7219 1.2489 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7221 -1.2496 8 1 3.9332 0.3055 -1.2497 9 6 4.0708 -1.4331 -2.4801 10 8 3.2821 -1.8937 -3.2780 11 7 5.3957 -1.5572 -2.6939 12 6 6.2193 -2.1704 -3.7539 13 6 7.3197 -1.1830 -3.3249 14 7 8.6572 -1.7782 -3.2690 15 6 9.1672 -2.4868 -2.2351 16 6 10.4193 -2.8443 -2.6041 17 6 11.4035 -3.6478 -1.7936 18 7 11.3090 -5.0601 -2.1713 19 6 12.1174 -5.9859 -1.5673 20 1 12.8213 -5.6754 -0.8093 21 6 12.0320 -7.3233 -1.9292 22 7 11.1744 -7.7014 -2.8534 23 14 13.1341 -8.5862 -1.1048 24 1 12.4537 -9.1257 0.0999 25 1 13.4132 -9.6940 -2.0534 26 1 14.4115 -7.9429 -0.7054 27 7 10.6138 -2.3385 -3.8272 28 7 9.5491 -1.7175 -4.1950 29 6 6.6069 -1.1316 -1.9612 30 6 2.0399 -0.7212 -1.2493 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.6766 -1.7490 1.2492 35 1 1.6767 -0.2075 2.1393 36 1 3.9334 -1.2361 2.1386 37 1 3.9337 0.3057 1.2488 38 1 3.7158 -2.4709 -0.0003 39 1 5.1695 -1.4434 -0.0009 40 1 5.8406 -1.9957 -4.7609 41 1 6.4699 -3.2150 -3.5690 42 1 7.2976 -0.2381 -3.8678 43 1 8.6743 -2.7196 -1.3027 44 1 11.1753 -3.5392 -0.7333 45 1 12.4136 -3.2867 -1.9867 46 1 10.6771 -5.3389 -2.8523 47 1 11.1145 -8.6360 -3.1060 48 1 6.9707 -1.8705 -1.2472 49 1 6.5370 -0.1290 -1.5393 50 1 1.6766 -0.2074 -2.1392 51 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105313430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:05 Heat of formation + Delta-G solvation = 72.428228 kcal Electronic energy + Delta-G solvation = -30229.111984 eV Core-core repulsion = 26165.698679 eV Total energy + Delta-G solvation = -4063.413305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.31526 -41.74439 -39.90352 -38.53364 -36.78584 -34.83130 -33.79926 -33.49648 -32.03385 -31.62257 -30.13047 -27.90549 -27.54802 -27.08751 -25.52845 -24.73715 -23.79620 -22.60739 -22.30035 -21.63764 -20.68701 -20.07456 -19.38250 -18.59414 -18.10752 -17.48117 -16.98957 -16.58182 -16.39963 -15.98706 -15.79286 -15.59255 -15.33351 -15.16369 -15.09249 -14.67258 -14.60702 -14.27068 -14.18853 -13.93355 -13.83184 -13.56975 -13.36086 -13.26120 -12.96558 -12.77075 -12.73630 -12.64032 -12.48447 -12.40900 -12.15178 -12.07909 -11.88182 -11.85820 -11.78805 -11.48593 -11.35448 -11.05694 -10.98772 -10.93792 -10.73704 -10.21395 -10.01895 -8.99723 -7.91978 -5.21919 0.56807 1.06663 1.38825 1.46965 1.52797 1.53416 1.62002 1.84812 2.60824 2.76713 3.01070 3.38327 3.43511 3.55007 3.66918 3.68791 3.74474 3.94888 4.01541 4.14491 4.15346 4.18537 4.22575 4.25227 4.33452 4.35791 4.40554 4.47737 4.52722 4.53683 4.60427 4.66008 4.69073 4.78811 4.87237 4.90016 4.98038 5.10588 5.14356 5.15281 5.19433 5.21246 5.29999 5.34412 5.39221 5.42715 5.53331 5.60906 5.64492 6.27812 6.39610 6.94247 7.34761 7.52245 8.07103 8.31826 9.31884 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013074 B = 0.002069 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.166307 B =13531.119701 C =14558.428882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.085 0.915 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.090 4.090 8 H 0.127 0.873 9 C 0.543 3.457 10 O -0.582 6.582 11 N -0.640 5.640 12 C 0.093 3.907 13 C 0.111 3.889 14 N -0.277 5.277 15 C -0.016 4.016 16 C -0.035 4.035 17 C 0.234 3.766 18 N -0.740 5.740 19 C -0.240 4.240 20 H 0.086 0.914 21 C -0.080 4.080 22 N -0.974 5.974 23 Si 0.978 3.022 24 H -0.283 1.283 25 H -0.301 1.301 26 H -0.267 1.267 27 N -0.297 5.297 28 N -0.108 5.108 29 C 0.109 3.891 30 C -0.094 4.094 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.167 0.833 43 H 0.230 0.770 44 H 0.067 0.933 45 H 0.029 0.971 46 H 0.370 0.630 47 H 0.249 0.751 48 H 0.117 0.883 49 H 0.147 0.853 50 H 0.056 0.944 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.856 23.422 11.338 33.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 H 0.103 0.897 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.149 4.149 7 C -0.111 4.111 8 H 0.145 0.855 9 C 0.334 3.666 10 O -0.461 6.461 11 N -0.376 5.376 12 C -0.031 4.031 13 C 0.009 3.991 14 N -0.071 5.071 15 C -0.167 4.167 16 C -0.174 4.174 17 C 0.106 3.894 18 N -0.382 5.382 19 C -0.371 4.371 20 H 0.104 0.896 21 C -0.272 4.272 22 N -0.625 5.625 23 Si 0.807 3.193 24 H -0.210 1.210 25 H -0.228 1.228 26 H -0.191 1.191 27 N -0.164 5.164 28 N -0.087 5.087 29 C -0.013 4.013 30 C -0.132 4.132 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.185 0.815 43 H 0.247 0.753 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.201 0.799 47 H 0.058 0.942 48 H 0.135 0.865 49 H 0.165 0.835 50 H 0.075 0.925 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.038 23.725 9.653 33.146 hybrid contribution -0.048 -1.927 0.225 1.941 sum -21.086 21.798 9.877 31.896 Atomic orbital electron populations 1.21829 0.95115 1.01574 1.02116 1.21124 0.95651 0.99945 0.93693 0.89675 1.21653 0.96010 1.00310 0.97616 1.21516 0.95167 1.01640 0.96709 1.21599 1.01614 0.98780 0.92889 1.21351 0.97311 1.01511 0.90950 0.85522 1.21104 0.79216 0.78658 0.87584 1.90721 1.55051 1.51116 1.49230 1.49743 1.04197 1.57505 1.26136 1.23569 0.86821 0.97906 0.94808 1.24131 0.73917 0.98981 1.02090 1.47403 1.13413 1.35272 1.11044 1.23740 0.95131 1.00233 0.97592 1.22302 0.97184 1.03886 0.93992 1.19007 0.93633 0.81671 0.95061 1.42532 1.46069 1.02168 1.47466 1.19705 1.13647 0.88318 1.15457 0.89586 1.25642 1.01620 0.99462 1.00471 1.69859 1.40934 1.15906 1.35758 0.85070 0.78753 0.78401 0.77103 1.20987 1.22840 1.19125 1.75060 1.17298 1.11068 1.12935 1.78200 0.94432 1.20707 1.15331 1.23995 0.78747 1.05685 0.92875 1.21392 0.92680 1.00660 0.98435 0.91536 0.92822 0.93524 0.93108 0.90737 0.90839 0.89890 0.93270 0.89601 0.88655 0.89902 0.81519 0.75340 0.91488 0.95343 0.79908 0.94209 0.86492 0.83494 0.92479 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.19 71.98 0.66 -0.77 16 2 C -0.09 -0.78 2.72 -10.79 -0.03 -0.81 16 3 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 4 C -0.12 -0.95 5.20 30.60 0.16 -0.79 16 5 C -0.11 -0.68 5.92 30.60 0.18 -0.50 16 6 C -0.11 -0.97 5.08 30.60 0.16 -0.81 16 7 C -0.09 -1.00 2.36 -11.56 -0.03 -1.03 16 8 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 9 C 0.54 10.14 7.38 87.65 0.65 10.79 16 10 O -0.58 -16.91 16.71 -3.03 -0.05 -16.96 16 11 N -0.64 -9.13 3.57 -836.59 -2.99 -12.12 16 12 C 0.09 1.62 8.64 86.49 0.75 2.37 16 13 C 0.11 1.45 5.14 46.76 0.24 1.69 16 14 N -0.28 -6.34 3.54 -332.05 -1.18 -7.51 16 15 C -0.02 -0.38 10.72 83.49 0.89 0.51 16 16 C -0.04 -1.24 6.61 41.59 0.28 -0.96 16 17 C 0.23 9.27 6.82 85.63 0.58 9.85 16 18 N -0.74 -37.99 5.59 -347.18 -1.94 -39.93 16 19 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 20 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 21 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 22 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 23 Si 0.98 46.11 29.55 68.60 2.03 48.13 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 N -0.30 -11.63 12.41 -48.60 -0.60 -12.24 16 28 N -0.11 -3.53 13.16 37.02 0.49 -3.05 16 29 C 0.11 0.73 6.27 86.45 0.54 1.27 16 30 C -0.09 -1.30 3.77 30.58 0.12 -1.18 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 0.45 6.13 -2.39 -0.01 0.44 16 40 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.23 3.42 6.73 -2.91 -0.02 3.40 16 44 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.37 20.97 7.66 -92.71 -0.71 20.26 16 47 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 48 H 0.12 0.56 6.13 -2.39 -0.01 0.55 16 49 H 0.15 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 51 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 Total: -1.00 -82.65 409.51 2.71 -79.94 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.22 Total: 21.30 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 6.45 Total: 3.03 kcal Atomic # 7 Polarization: -129.50 SS G_CDS: -5.94 Total: -135.44 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.05 Total: -16.96 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -82.65 2.71 -79.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105313430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.369 kcal (2) G-P(sol) polarization free energy of solvation -82.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds