Wall clock time and date at job start Wed Apr 1 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.53003 * 109.47006 * 119.99959 * 2 1 3 5 5 C 1.52998 * 109.47006 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47198 * 300.00107 * 5 4 2 7 7 C 1.52999 * 109.47678 * 59.99563 * 6 5 4 8 8 C 1.53001 * 109.46759 * 239.99798 * 2 1 3 9 9 H 1.08994 * 109.47136 * 299.99645 * 8 2 1 10 10 C 1.50694 * 109.47385 * 60.00153 * 8 2 1 11 11 O 1.21284 * 119.99719 * 35.52893 * 10 8 2 12 12 N 1.34778 * 120.00038 * 215.52518 * 10 8 2 13 13 C 1.47577 * 134.48880 * 174.89757 * 12 10 8 14 14 C 1.53948 * 86.11502 * 155.36174 * 13 12 10 15 15 N 1.46501 * 113.74405 * 137.94948 * 14 13 12 16 16 C 1.35304 * 125.87151 * 276.93115 * 15 14 13 17 17 C 1.35352 * 106.18022 * 179.97438 * 16 15 14 18 18 C 1.50690 * 126.75557 * 179.74095 * 17 16 15 19 19 N 1.46504 * 109.47607 * 94.99858 * 18 17 16 20 20 C 1.36932 * 119.99966 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00688 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99753 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00098 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47357 * 59.99733 * 24 22 20 26 26 H 1.48509 * 109.47226 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47291 * 299.99652 * 24 22 20 28 28 N 1.33776 * 106.49188 * 359.97438 * 17 16 15 29 29 N 1.28632 * 108.88609 * 0.02562 * 28 17 16 30 30 C 1.47805 * 134.45592 * 354.77177 * 12 10 8 31 31 H 1.09006 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47134 * 299.99931 * 1 2 3 33 33 H 1.08998 * 109.47453 * 60.00191 * 1 2 3 34 34 H 1.08998 * 109.47042 * 299.99561 * 4 2 1 35 35 H 1.08998 * 109.47145 * 60.00053 * 4 2 1 36 36 H 1.09006 * 109.47315 * 59.99754 * 5 4 2 37 37 H 1.08998 * 109.47453 * 179.97438 * 5 4 2 38 38 H 1.08996 * 109.47670 * 180.02562 * 6 5 4 39 39 H 1.09006 * 109.46699 * 300.00024 * 6 5 4 40 40 H 1.08994 * 109.47489 * 179.97438 * 7 6 5 41 41 H 1.09006 * 109.46678 * 60.00449 * 7 6 5 42 42 H 1.09003 * 113.77184 * 41.06320 * 13 12 10 43 43 H 1.08996 * 113.87653 * 269.67485 * 13 12 10 44 44 H 1.09002 * 113.74583 * 269.15767 * 14 13 12 45 45 H 1.08008 * 126.91267 * 359.93844 * 16 15 14 46 46 H 1.09002 * 109.47516 * 214.99833 * 18 17 16 47 47 H 1.08998 * 109.47233 * 334.99230 * 18 17 16 48 48 H 0.96994 * 119.99779 * 359.97438 * 19 18 17 49 49 H 0.97003 * 120.00241 * 180.02562 * 23 22 20 50 50 H 1.08996 * 113.77180 * 90.37841 * 30 12 10 51 51 H 1.09003 * 113.83825 * 318.91141 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5699 -0.7218 1.2490 6 6 4.0794 -1.4434 -0.0003 7 6 3.5694 -0.7223 -1.2496 8 6 2.0399 -0.7213 -1.2492 9 1 1.6766 -1.7489 -1.2492 10 6 1.5376 -0.0110 -2.4797 11 8 1.4310 1.1971 -2.4813 12 7 1.2070 -0.7182 -3.5783 13 6 0.6103 -0.3802 -4.8851 14 6 1.3115 -1.6443 -5.4145 15 7 0.4820 -2.4438 -6.3194 16 6 -0.4457 -3.3557 -5.9469 17 6 -0.9686 -3.8514 -7.0927 18 6 -2.0397 -4.9045 -7.2135 19 7 -3.3465 -4.2578 -7.3562 20 6 -4.4773 -5.0198 -7.4823 21 1 -4.4058 -6.0973 -7.4771 22 6 -5.7156 -4.4070 -7.6169 23 7 -5.8028 -3.0937 -7.6228 24 14 -7.2581 -5.4463 -7.7897 25 1 -7.4122 -6.3069 -6.5894 26 1 -8.4415 -4.5583 -7.9181 27 1 -7.1469 -6.3000 -8.9998 28 7 -0.3437 -3.2264 -8.0969 29 7 0.5098 -2.3989 -7.6055 30 6 1.2988 -2.1437 -3.9583 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6767 -0.2074 2.1392 35 1 1.6766 -1.7489 1.2493 36 1 3.9337 0.3058 1.2487 37 1 3.9333 -1.2352 2.1391 38 1 5.1694 -1.4442 -0.0003 39 1 3.7157 -2.4710 0.0000 40 1 3.9328 -1.2361 -2.1395 41 1 3.9332 0.3053 -1.2499 42 1 0.9909 0.5462 -5.3155 43 1 -0.4778 -0.4415 -4.9024 44 1 2.3117 -1.4599 -5.8064 45 1 -0.7146 -3.6327 -4.9382 46 1 -1.8434 -5.5238 -8.0888 47 1 -2.0385 -5.5282 -6.3196 48 1 -3.4108 -3.2900 -7.3605 49 1 -6.6682 -2.6655 -7.7165 50 1 0.4134 -2.7249 -3.7009 51 1 2.2281 -2.6228 -3.6500 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105315351.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:12 Heat of formation + Delta-G solvation = 97.992977 kcal Electronic energy + Delta-G solvation = -30433.251803 eV Core-core repulsion = 26370.947068 eV Total energy + Delta-G solvation = -4062.304735 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.14805 -41.07505 -39.39248 -37.61437 -35.01712 -33.54719 -33.04299 -31.94161 -31.71644 -29.97740 -29.31811 -27.19070 -26.77821 -25.87792 -24.46058 -23.27492 -22.83672 -21.86055 -21.11737 -20.70881 -20.30501 -19.29010 -18.04636 -17.55676 -17.03806 -16.60651 -16.07077 -15.48118 -15.08905 -14.99329 -14.86178 -14.69330 -14.55618 -14.23678 -14.04601 -13.73952 -13.42729 -13.28873 -13.17632 -13.05925 -12.89632 -12.65982 -12.58945 -12.38192 -12.09259 -11.98186 -11.80490 -11.72630 -11.34589 -11.30353 -10.97268 -10.92495 -10.90784 -10.80250 -10.58562 -10.52524 -10.14358 -10.03047 -9.91442 -9.74359 -9.29191 -8.92852 -8.87498 -6.93210 -5.74604 -3.04603 1.68443 1.89586 2.12945 2.61731 2.84696 3.45412 3.45774 3.50277 3.51456 3.66053 4.06412 4.15596 4.19641 4.28574 4.46827 4.60314 4.61488 4.64534 4.68574 4.71655 4.81231 4.88090 4.90917 4.98235 5.02348 5.09286 5.11336 5.19657 5.27050 5.30015 5.34388 5.43745 5.45711 5.48395 5.59272 5.60235 5.61079 5.69204 5.75573 5.77545 5.81673 5.91748 6.03799 6.15354 6.34756 6.60990 6.65778 6.74620 7.08579 7.69793 7.69828 8.42446 8.76487 9.54217 10.09490 10.45231 11.47966 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013302 B = 0.002133 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.481757 B =13123.513166 C =14144.754912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.075 4.075 3 H 0.083 0.917 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.108 4.108 8 C -0.094 4.094 9 H 0.090 0.910 10 C 0.551 3.449 11 O -0.528 6.528 12 N -0.645 5.645 13 C 0.102 3.898 14 C 0.113 3.887 15 N -0.295 5.295 16 C -0.047 4.047 17 C 0.000 4.000 18 C 0.232 3.768 19 N -0.726 5.726 20 C -0.241 4.241 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.910 3.090 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 N -0.250 5.250 29 N -0.090 5.090 30 C 0.099 3.901 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.145 0.855 45 H 0.188 0.812 46 H 0.040 0.960 47 H 0.038 0.962 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.104 0.896 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.191 3.708 19.620 30.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.094 4.094 3 H 0.101 0.899 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.146 4.146 8 C -0.116 4.116 9 H 0.108 0.892 10 C 0.341 3.659 11 O -0.402 6.402 12 N -0.382 5.382 13 C -0.021 4.021 14 C 0.010 3.990 15 N -0.089 5.089 16 C -0.196 4.196 17 C -0.137 4.137 18 C 0.103 3.897 19 N -0.371 5.371 20 C -0.372 4.372 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 N -0.118 5.118 29 N -0.069 5.069 30 C -0.025 4.025 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.163 0.837 45 H 0.205 0.795 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.122 0.878 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 23.732 5.025 18.561 30.544 hybrid contribution -1.480 -0.615 0.824 1.803 sum 22.251 4.410 19.385 29.838 Atomic orbital electron populations 1.21898 0.94735 1.01885 1.02527 1.21014 0.95893 1.00129 0.92346 0.89882 1.21607 0.95447 1.00800 0.97254 1.21571 0.95688 1.01003 0.97749 1.21522 1.00522 0.99384 0.94020 1.21471 0.92291 1.02095 0.98726 1.21366 0.97413 1.00519 0.92274 0.89219 1.20388 0.76297 0.87084 0.82106 1.90732 1.53561 1.13886 1.82059 1.49792 1.63293 1.09495 1.15655 1.23608 0.99958 0.98162 0.80373 1.23673 0.96148 0.91561 0.87655 1.47114 1.27249 1.28054 1.06512 1.23309 0.96682 0.97348 1.02300 1.22490 1.00893 1.02060 0.88291 1.18963 0.82001 0.89549 0.99209 1.42292 0.99922 1.06310 1.88534 1.19174 0.85005 0.90509 1.42530 0.90919 1.24765 0.97693 0.95657 1.02771 1.69670 1.24006 1.07364 1.56966 0.86234 0.82791 0.78985 0.77941 1.21238 1.21739 1.21164 1.75131 1.04838 1.05084 1.26736 1.78307 1.19410 1.19263 0.89877 1.23686 1.04654 0.84701 0.89467 0.92647 0.92147 0.92332 0.91422 0.91719 0.91782 0.91753 0.91476 0.91656 0.91552 0.90965 0.88108 0.88204 0.83744 0.79480 0.94252 0.94448 0.78104 0.93435 0.87842 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.93 37.16 0.33 -0.92 16 2 C -0.07 -0.55 1.94 -90.62 -0.18 -0.73 16 3 H 0.08 0.74 7.86 -51.93 -0.41 0.33 16 4 C -0.11 -0.63 5.20 -26.73 -0.14 -0.76 16 5 C -0.12 -0.59 5.92 -26.73 -0.16 -0.75 16 6 C -0.12 -0.53 5.92 -26.73 -0.16 -0.69 16 7 C -0.11 -0.62 5.18 -26.76 -0.14 -0.76 16 8 C -0.09 -0.66 1.91 -91.80 -0.18 -0.83 16 9 H 0.09 0.51 7.76 -51.93 -0.40 0.11 16 10 C 0.55 5.47 6.00 -10.99 -0.07 5.40 16 11 O -0.53 -7.32 16.50 5.55 0.09 -7.22 16 12 N -0.64 -5.43 3.61 -178.35 -0.64 -6.07 16 13 C 0.10 0.95 8.64 -2.97 -0.03 0.93 16 14 C 0.11 0.93 5.14 -70.15 -0.36 0.57 16 15 N -0.29 -3.72 3.54 -56.30 -0.20 -3.92 16 16 C -0.05 -0.63 10.72 -17.05 -0.18 -0.82 16 17 C 0.00 0.00 6.62 -82.78 -0.55 -0.54 16 18 C 0.23 4.71 6.82 -5.20 -0.04 4.67 16 19 N -0.73 -18.65 5.59 -61.09 -0.34 -18.99 16 20 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 24 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 N -0.25 -4.91 12.41 33.29 0.41 -4.49 16 29 N -0.09 -1.51 13.16 60.35 0.79 -0.71 16 30 C 0.10 0.58 7.73 -2.84 -0.02 0.55 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.61 6.84 -51.93 -0.36 0.26 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.19 1.88 6.73 -52.48 -0.35 1.53 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.39 10.72 7.66 -40.82 -0.31 10.40 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 50 H 0.10 0.55 6.31 -51.93 -0.33 0.22 16 51 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 410.48 15.07 6.19 6.19 Total: -1.00 -35.81 410.48 -8.57 -44.38 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.47 Total: 3.37 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.10 Total: -2.03 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.75 Total: -62.03 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.09 Total: -7.22 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.81 -8.57 -44.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105315351.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.370 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds