Wall clock time and date at job start Wed Apr 1 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.53003 * 109.47006 * 119.99959 * 2 1 3 5 5 C 1.52998 * 109.47006 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47198 * 300.00107 * 5 4 2 7 7 C 1.52999 * 109.47678 * 59.99563 * 6 5 4 8 8 C 1.53001 * 109.46759 * 239.99798 * 2 1 3 9 9 H 1.08994 * 109.47136 * 299.99645 * 8 2 1 10 10 C 1.50694 * 109.47385 * 60.00153 * 8 2 1 11 11 O 1.21284 * 119.99719 * 35.52893 * 10 8 2 12 12 N 1.34778 * 120.00038 * 215.52518 * 10 8 2 13 13 C 1.47577 * 134.48880 * 174.89757 * 12 10 8 14 14 C 1.53948 * 86.11502 * 155.36174 * 13 12 10 15 15 N 1.46501 * 113.74405 * 137.94948 * 14 13 12 16 16 C 1.35304 * 125.87151 * 276.93115 * 15 14 13 17 17 C 1.35352 * 106.18022 * 179.97438 * 16 15 14 18 18 C 1.50690 * 126.75557 * 179.74095 * 17 16 15 19 19 N 1.46504 * 109.47607 * 94.99858 * 18 17 16 20 20 C 1.36932 * 119.99966 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00688 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99753 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00098 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47357 * 59.99733 * 24 22 20 26 26 H 1.48509 * 109.47226 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47291 * 299.99652 * 24 22 20 28 28 N 1.33776 * 106.49188 * 359.97438 * 17 16 15 29 29 N 1.28632 * 108.88609 * 0.02562 * 28 17 16 30 30 C 1.47805 * 134.45592 * 354.77177 * 12 10 8 31 31 H 1.09006 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47134 * 299.99931 * 1 2 3 33 33 H 1.08998 * 109.47453 * 60.00191 * 1 2 3 34 34 H 1.08998 * 109.47042 * 299.99561 * 4 2 1 35 35 H 1.08998 * 109.47145 * 60.00053 * 4 2 1 36 36 H 1.09006 * 109.47315 * 59.99754 * 5 4 2 37 37 H 1.08998 * 109.47453 * 179.97438 * 5 4 2 38 38 H 1.08996 * 109.47670 * 180.02562 * 6 5 4 39 39 H 1.09006 * 109.46699 * 300.00024 * 6 5 4 40 40 H 1.08994 * 109.47489 * 179.97438 * 7 6 5 41 41 H 1.09006 * 109.46678 * 60.00449 * 7 6 5 42 42 H 1.09003 * 113.77184 * 41.06320 * 13 12 10 43 43 H 1.08996 * 113.87653 * 269.67485 * 13 12 10 44 44 H 1.09002 * 113.74583 * 269.15767 * 14 13 12 45 45 H 1.08008 * 126.91267 * 359.93844 * 16 15 14 46 46 H 1.09002 * 109.47516 * 214.99833 * 18 17 16 47 47 H 1.08998 * 109.47233 * 334.99230 * 18 17 16 48 48 H 0.96994 * 119.99779 * 359.97438 * 19 18 17 49 49 H 0.97003 * 120.00241 * 180.02562 * 23 22 20 50 50 H 1.08996 * 113.77180 * 90.37841 * 30 12 10 51 51 H 1.09003 * 113.83825 * 318.91141 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5699 -0.7218 1.2490 6 6 4.0794 -1.4434 -0.0003 7 6 3.5694 -0.7223 -1.2496 8 6 2.0399 -0.7213 -1.2492 9 1 1.6766 -1.7489 -1.2492 10 6 1.5376 -0.0110 -2.4797 11 8 1.4310 1.1971 -2.4813 12 7 1.2070 -0.7182 -3.5783 13 6 0.6103 -0.3802 -4.8851 14 6 1.3115 -1.6443 -5.4145 15 7 0.4820 -2.4438 -6.3194 16 6 -0.4457 -3.3557 -5.9469 17 6 -0.9686 -3.8514 -7.0927 18 6 -2.0397 -4.9045 -7.2135 19 7 -3.3465 -4.2578 -7.3562 20 6 -4.4773 -5.0198 -7.4823 21 1 -4.4058 -6.0973 -7.4771 22 6 -5.7156 -4.4070 -7.6169 23 7 -5.8028 -3.0937 -7.6228 24 14 -7.2581 -5.4463 -7.7897 25 1 -7.4122 -6.3069 -6.5894 26 1 -8.4415 -4.5583 -7.9181 27 1 -7.1469 -6.3000 -8.9998 28 7 -0.3437 -3.2264 -8.0969 29 7 0.5098 -2.3989 -7.6055 30 6 1.2988 -2.1437 -3.9583 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6767 -0.2074 2.1392 35 1 1.6766 -1.7489 1.2493 36 1 3.9337 0.3058 1.2487 37 1 3.9333 -1.2352 2.1391 38 1 5.1694 -1.4442 -0.0003 39 1 3.7157 -2.4710 0.0000 40 1 3.9328 -1.2361 -2.1395 41 1 3.9332 0.3053 -1.2499 42 1 0.9909 0.5462 -5.3155 43 1 -0.4778 -0.4415 -4.9024 44 1 2.3117 -1.4599 -5.8064 45 1 -0.7146 -3.6327 -4.9382 46 1 -1.8434 -5.5238 -8.0888 47 1 -2.0385 -5.5282 -6.3196 48 1 -3.4108 -3.2900 -7.3605 49 1 -6.6682 -2.6655 -7.7165 50 1 0.4134 -2.7249 -3.7009 51 1 2.2281 -2.6228 -3.6500 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105315351.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:11 Heat of formation + Delta-G solvation = 73.626148 kcal Electronic energy + Delta-G solvation = -30434.308428 eV Core-core repulsion = 26370.947068 eV Total energy + Delta-G solvation = -4063.361360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.31882 -41.78663 -40.02744 -38.32946 -36.78614 -34.79286 -33.58398 -33.54173 -32.35240 -31.62437 -30.08968 -27.88740 -27.64446 -27.21400 -25.33709 -24.73306 -23.90218 -22.46652 -22.26282 -21.70463 -20.80994 -19.94886 -19.40528 -18.72986 -18.16722 -17.47733 -17.05122 -16.57949 -16.30081 -15.92915 -15.63974 -15.51430 -15.39674 -15.23129 -15.08538 -14.85505 -14.66933 -14.30214 -14.06688 -13.91275 -13.74196 -13.65383 -13.39984 -13.21117 -12.97290 -12.86224 -12.72057 -12.64118 -12.51560 -12.50452 -12.22093 -12.11914 -11.86647 -11.82611 -11.79892 -11.51890 -11.37406 -11.06346 -11.02194 -10.92691 -10.69195 -10.21706 -10.00343 -8.99878 -7.91720 -5.21815 0.56420 1.06141 1.39001 1.46681 1.52720 1.54886 1.60855 1.84421 2.61018 2.76670 3.00889 3.38119 3.43443 3.54310 3.62032 3.67664 3.75721 3.94148 3.98593 4.14027 4.19009 4.19314 4.25141 4.25655 4.32746 4.38498 4.42402 4.43693 4.51054 4.51793 4.54077 4.59444 4.66792 4.72174 4.84139 4.89628 4.96701 5.02196 5.14922 5.15922 5.18502 5.20925 5.30247 5.31073 5.34775 5.40199 5.53020 5.57772 5.63953 6.27814 6.40036 6.96055 7.34813 7.51810 8.07090 8.31986 9.31946 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013302 B = 0.002133 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.481757 B =13123.513166 C =14144.754912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.074 4.074 3 H 0.058 0.942 4 C -0.108 4.108 5 C -0.124 4.124 6 C -0.113 4.113 7 C -0.105 4.105 8 C -0.088 4.088 9 H 0.115 0.885 10 C 0.547 3.453 11 O -0.578 6.578 12 N -0.643 5.643 13 C 0.093 3.907 14 C 0.111 3.889 15 N -0.277 5.277 16 C -0.016 4.016 17 C -0.035 4.035 18 C 0.234 3.766 19 N -0.740 5.740 20 C -0.241 4.241 21 H 0.086 0.914 22 C -0.080 4.080 23 N -0.974 5.974 24 Si 0.978 3.022 25 H -0.271 1.271 26 H -0.300 1.300 27 H -0.279 1.279 28 N -0.297 5.297 29 N -0.108 5.108 30 C 0.110 3.890 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.166 0.834 45 H 0.230 0.770 46 H 0.029 0.971 47 H 0.067 0.933 48 H 0.370 0.630 49 H 0.250 0.750 50 H 0.118 0.882 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.734 1.048 21.874 33.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 H 0.076 0.924 4 C -0.146 4.146 5 C -0.161 4.161 6 C -0.150 4.150 7 C -0.143 4.143 8 C -0.109 4.109 9 H 0.133 0.867 10 C 0.339 3.661 11 O -0.457 6.457 12 N -0.379 5.379 13 C -0.031 4.031 14 C 0.009 3.991 15 N -0.071 5.071 16 C -0.167 4.167 17 C -0.173 4.173 18 C 0.107 3.893 19 N -0.383 5.383 20 C -0.373 4.373 21 H 0.104 0.896 22 C -0.271 4.271 23 N -0.625 5.625 24 Si 0.807 3.193 25 H -0.196 1.196 26 H -0.227 1.227 27 H -0.205 1.205 28 N -0.164 5.164 29 N -0.087 5.087 30 C -0.013 4.013 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.184 0.816 45 H 0.247 0.753 46 H 0.047 0.953 47 H 0.085 0.915 48 H 0.201 0.799 49 H 0.058 0.942 50 H 0.136 0.864 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 25.339 2.310 20.812 32.871 hybrid contribution -1.857 0.284 0.161 1.886 sum 23.482 2.593 20.973 31.591 Atomic orbital electron populations 1.21878 0.95511 1.02237 1.01199 1.20986 0.95196 0.99306 0.93859 0.92390 1.21574 0.95948 1.01074 0.95977 1.21588 0.95106 1.00755 0.98678 1.21517 1.01002 0.99719 0.92762 1.21479 0.91154 1.01445 1.00260 1.21419 0.98267 1.01034 0.90167 0.86737 1.21008 0.75508 0.86652 0.82931 1.90710 1.55733 1.16272 1.82953 1.49813 1.62359 1.10912 1.14828 1.23563 0.99277 0.98704 0.81536 1.24104 0.95954 0.90636 0.88385 1.47399 1.26645 1.27210 1.05868 1.23747 0.94788 0.95440 1.02737 1.22298 1.01882 1.03318 0.89815 1.19002 0.80407 0.90213 0.99722 1.42519 1.01603 1.05612 1.88520 1.19665 0.85849 0.91346 1.40415 0.89614 1.25641 1.01023 0.96767 1.03700 1.69851 1.24154 1.09230 1.59233 0.85145 0.78473 0.77307 0.78422 1.19625 1.22667 1.20511 1.75060 1.06271 1.06496 1.28556 1.78204 1.19470 1.19238 0.91747 1.23952 1.07432 0.83245 0.86637 0.91323 0.91907 0.95262 0.91430 0.90449 0.92827 0.90567 0.90693 0.90172 0.90043 0.92953 0.88754 0.89758 0.81640 0.75327 0.95344 0.91526 0.79905 0.94183 0.86435 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.93 71.98 0.64 -1.75 16 2 C -0.07 -1.03 1.94 -10.79 -0.02 -1.05 16 3 H 0.06 1.09 7.86 -2.39 -0.02 1.07 16 4 C -0.11 -0.96 5.20 30.59 0.16 -0.80 16 5 C -0.12 -0.92 5.92 30.59 0.18 -0.73 16 6 C -0.11 -0.65 5.92 30.59 0.18 -0.47 16 7 C -0.11 -0.95 5.18 30.58 0.16 -0.79 16 8 C -0.09 -1.03 1.91 -11.56 -0.02 -1.05 16 9 H 0.11 0.79 7.76 -2.39 -0.02 0.77 16 10 C 0.55 10.34 6.00 87.65 0.53 10.87 16 11 O -0.58 -16.63 16.50 -3.04 -0.05 -16.68 16 12 N -0.64 -9.49 3.61 -836.58 -3.02 -12.51 16 13 C 0.09 1.65 8.64 86.49 0.75 2.40 16 14 C 0.11 1.51 5.14 46.75 0.24 1.75 16 15 N -0.28 -6.41 3.54 -332.03 -1.18 -7.59 16 16 C -0.02 -0.39 10.72 83.49 0.89 0.50 16 17 C -0.03 -1.23 6.62 41.59 0.28 -0.95 16 18 C 0.23 9.31 6.82 85.63 0.58 9.90 16 19 N -0.74 -38.09 5.59 -347.19 -1.94 -40.03 16 20 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 21 H 0.09 4.42 7.83 -2.91 -0.02 4.39 16 22 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 23 N -0.97 -60.89 13.06 21.65 0.28 -60.60 16 24 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 28 N -0.30 -11.70 12.41 -48.60 -0.60 -12.30 16 29 N -0.11 -3.55 13.16 37.02 0.49 -3.07 16 30 C 0.11 0.79 7.73 86.44 0.67 1.45 16 31 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 33 H 0.03 0.63 6.84 -2.39 -0.02 0.61 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 40 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.17 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.23 3.48 6.73 -2.91 -0.02 3.46 16 46 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.37 21.00 7.66 -92.71 -0.71 20.29 16 49 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 50 H 0.12 0.60 6.31 -2.39 -0.02 0.59 16 51 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 Total: -1.00 -82.17 410.48 2.74 -79.43 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.22 Total: 22.64 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 6.52 Total: 2.63 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -5.97 Total: -136.09 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.05 Total: -16.68 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -82.17 2.74 -79.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105315351.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.052 kcal (2) G-P(sol) polarization free energy of solvation -82.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds