Wall clock time and date at job start Wed Apr 1 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.01410 * 2 1 4 4 C 1.54265 * 110.03378 * 121.39223 * 2 1 3 5 5 C 1.54886 * 104.31278 * 95.65828 * 4 2 1 6 6 C 1.55229 * 102.58940 * 37.93255 * 5 4 2 7 7 C 1.53879 * 110.07474 * 238.58254 * 2 1 3 8 8 C 1.53000 * 110.02945 * 121.40932 * 7 2 1 9 9 C 1.50699 * 110.03048 * 359.97438 * 7 2 1 10 10 O 1.21281 * 119.99448 * 253.44529 * 9 7 2 11 11 N 1.34772 * 120.00157 * 73.44392 * 9 7 2 12 12 C 1.47073 * 136.05943 * 0.97146 * 11 9 7 13 13 C 1.53759 * 87.88650 * 152.96336 * 12 11 9 14 14 N 1.46502 * 114.57372 * 272.66263 * 13 12 11 15 15 C 1.35304 * 125.86769 * 3.48056 * 14 13 12 16 16 C 1.35357 * 106.17513 * 180.02562 * 15 14 13 17 17 C 1.50694 * 126.75398 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.47414 * 94.99698 * 17 16 15 19 19 C 1.36941 * 120.00057 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00173 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00076 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00259 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 120.00002 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46921 * 90.00537 * 23 21 19 25 25 H 1.48495 * 109.46986 * 210.00422 * 23 21 19 26 26 H 1.48505 * 109.46999 * 330.00287 * 23 21 19 27 27 N 1.33773 * 106.49383 * 359.97438 * 16 15 14 28 28 N 1.28638 * 108.88396 * 359.73936 * 27 16 15 29 29 C 1.47068 * 136.05693 * 181.34509 * 11 9 7 30 30 H 1.08999 * 109.46874 * 305.10639 * 1 2 3 31 31 H 1.09005 * 109.47023 * 65.10335 * 1 2 3 32 32 H 1.09001 * 109.46878 * 185.10104 * 1 2 3 33 33 H 1.09001 * 110.48853 * 214.40663 * 4 2 1 34 34 H 1.09004 * 110.48363 * 336.91203 * 4 2 1 35 35 H 1.09001 * 110.75452 * 156.32556 * 5 4 2 36 36 H 1.08999 * 110.75588 * 279.69335 * 5 4 2 37 37 H 1.08998 * 110.46975 * 203.39443 * 6 5 4 38 38 H 1.09005 * 110.47153 * 80.77763 * 6 5 4 39 39 H 1.08998 * 109.47686 * 70.56263 * 8 7 2 40 40 H 1.09001 * 109.46871 * 190.56267 * 8 7 2 41 41 H 1.09003 * 109.47199 * 310.55838 * 8 7 2 42 42 H 1.08994 * 113.46771 * 267.69811 * 12 11 9 43 43 H 1.09001 * 113.46376 * 38.13644 * 12 11 9 44 44 H 1.09000 * 114.08166 * 139.77889 * 13 12 11 45 45 H 1.08004 * 126.92109 * 359.97438 * 15 14 13 46 46 H 1.09002 * 109.47208 * 214.99641 * 17 16 15 47 47 H 1.09003 * 109.46942 * 334.99326 * 17 16 15 48 48 H 0.96999 * 120.00218 * 359.97438 * 18 17 16 49 49 H 0.96996 * 120.00085 * 179.97438 * 22 21 19 50 50 H 1.09000 * 113.46995 * 321.86070 * 29 11 9 51 51 H 1.08997 * 113.46838 * 92.24694 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 1.2372 5 6 2.3287 -2.1908 0.7230 6 6 2.8891 -1.9398 -0.7027 7 6 2.0582 -0.7534 -1.2334 8 6 2.9417 0.1710 -2.0735 9 6 0.9055 -1.2600 -2.0615 10 8 0.6350 -2.4422 -2.0651 11 7 0.1754 -0.3993 -2.7981 12 6 0.1944 1.0469 -3.0647 13 6 -0.4689 0.7482 -4.4194 14 7 0.4692 0.4501 -5.5044 15 6 1.8138 0.3561 -5.3865 16 6 2.2818 0.0694 -6.6238 17 6 3.7218 -0.1343 -7.0185 18 7 4.0376 -1.5646 -6.9927 19 6 5.2970 -1.9936 -7.3170 20 1 6.0573 -1.2777 -7.5921 21 6 5.5962 -3.3489 -7.2931 22 7 6.8068 -3.7613 -7.6043 23 14 4.2810 -4.5875 -6.8179 24 1 3.5495 -5.0240 -8.0343 25 1 4.9186 -5.7643 -6.1747 26 1 3.3293 -3.9587 -5.8669 27 7 1.2144 0.0023 -7.4274 28 7 0.1554 0.2269 -6.7326 29 6 -0.9951 -0.4920 -3.6837 30 1 -0.3633 0.5910 0.8407 31 1 -0.3633 0.4326 -0.9322 32 1 -0.3633 -1.0236 0.0914 33 1 2.9806 -0.2988 1.5973 34 1 1.3066 -0.7674 2.0263 35 1 3.0672 -2.6924 1.3484 36 1 1.4037 -2.7657 0.6790 37 1 2.7426 -2.8190 -1.3300 38 1 3.9455 -1.6751 -0.6559 39 1 3.8754 0.3612 -1.5443 40 1 3.1569 -0.3034 -3.0309 41 1 2.4221 1.1140 -2.2440 42 1 -0.4389 1.6213 -2.3886 43 1 1.1997 1.4588 -3.1533 44 1 -1.2427 1.4617 -4.7026 45 1 2.3968 0.4848 -4.4864 46 1 3.8815 0.2550 -8.0240 47 1 4.3687 0.3934 -6.3176 48 1 3.3550 -2.2077 -6.7453 49 1 7.0159 -4.7083 -7.5872 50 1 -1.0032 -1.3911 -4.2998 51 1 -1.9420 -0.3242 -3.1707 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105318825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:17 Heat of formation + Delta-G solvation = 131.768213 kcal Electronic energy + Delta-G solvation = -32674.361121 eV Core-core repulsion = 28613.520991 eV Total energy + Delta-G solvation = -4060.840130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.31099 -41.48200 -39.41462 -37.32344 -35.18561 -33.51123 -32.23110 -31.91611 -31.50397 -30.34376 -29.34519 -27.00325 -26.64663 -26.08810 -24.88878 -23.94731 -22.42315 -22.11542 -21.11939 -20.67280 -20.22972 -18.94070 -17.98917 -17.39143 -17.10641 -16.46022 -16.23631 -15.91764 -15.76075 -14.88445 -14.85076 -14.47921 -14.15701 -14.13469 -13.71808 -13.57769 -13.47519 -13.17075 -13.05668 -12.88177 -12.80567 -12.69894 -12.67907 -12.49290 -12.10447 -11.75318 -11.59853 -11.56329 -11.12483 -11.10082 -11.06335 -10.97262 -10.84193 -10.80459 -10.76237 -10.59428 -10.13658 -10.04076 -9.85464 -9.56458 -9.25647 -9.01242 -8.87226 -7.21231 -5.73696 -3.09303 1.60878 2.09005 2.23694 2.39615 2.73214 3.29365 3.45080 3.50211 3.52888 3.73928 4.05747 4.10848 4.21986 4.34071 4.49540 4.53464 4.61121 4.64923 4.67429 4.83410 4.89227 4.96604 4.98767 5.06928 5.07320 5.11057 5.14825 5.21817 5.27370 5.33053 5.42233 5.51246 5.55234 5.56845 5.63216 5.66866 5.68055 5.68367 5.74209 5.80516 5.87660 5.96482 6.10765 6.15231 6.23050 6.53428 6.59629 6.66321 7.21209 7.85271 8.00301 8.45074 8.66566 9.23006 9.96044 10.15713 11.44308 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009588 B = 0.004226 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.733653 B = 6624.065318 C = 8407.725950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.080 4.080 3 H 0.082 0.918 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.110 4.110 7 C -0.074 4.074 8 C -0.156 4.156 9 C 0.567 3.433 10 O -0.523 6.523 11 N -0.649 5.649 12 C 0.089 3.911 13 C 0.104 3.896 14 N -0.282 5.282 15 C -0.042 4.042 16 C -0.010 4.010 17 C 0.238 3.762 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.094 0.906 21 C 0.011 3.989 22 N -0.932 5.932 23 Si 0.880 3.120 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.279 1.279 27 N -0.250 5.250 28 N -0.089 5.089 29 C 0.097 3.903 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.143 0.857 45 H 0.185 0.815 46 H 0.049 0.951 47 H 0.045 0.955 48 H 0.363 0.637 49 H 0.260 0.740 50 H 0.090 0.910 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.381 15.515 20.640 30.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.098 4.098 3 H 0.100 0.900 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.147 4.147 7 C -0.077 4.077 8 C -0.213 4.213 9 C 0.358 3.642 10 O -0.397 6.397 11 N -0.387 5.387 12 C -0.035 4.035 13 C -0.001 4.001 14 N -0.075 5.075 15 C -0.192 4.192 16 C -0.148 4.148 17 C 0.109 3.891 18 N -0.395 5.395 19 C -0.374 4.374 20 H 0.112 0.888 21 C -0.185 4.185 22 N -0.580 5.580 23 Si 0.710 3.290 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.206 1.206 27 N -0.118 5.118 28 N -0.067 5.067 29 C -0.027 4.027 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.119 0.881 44 H 0.161 0.839 45 H 0.202 0.798 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.195 0.805 49 H 0.070 0.930 50 H 0.109 0.891 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.292 14.588 19.681 29.986 hybrid contribution -0.214 -0.930 1.217 1.546 sum -17.506 13.657 20.897 30.491 Atomic orbital electron populations 1.22253 0.94996 1.02498 1.02425 1.21775 0.95802 0.99175 0.93075 0.90015 1.22439 1.00900 0.95794 0.96555 1.22536 1.01240 0.96440 0.95807 1.22486 0.98488 0.97106 0.96653 1.21482 0.93520 0.97736 0.94971 1.22284 0.99920 0.98384 1.00681 1.20048 0.82318 0.84797 0.77022 1.90737 1.69715 1.15890 1.63360 1.49692 1.31589 1.08504 1.48911 1.23731 1.03606 0.84235 0.91922 1.22752 0.92497 0.99965 0.84842 1.46735 1.05951 1.46714 1.08118 1.23444 0.84096 1.09848 1.01855 1.22528 0.98100 1.04264 0.89870 1.18911 0.83367 0.87421 0.99385 1.42658 1.11645 1.00992 1.84228 1.19024 0.87062 0.92570 1.38707 0.88844 1.24590 0.96079 0.96509 1.01361 1.69692 1.18725 1.14672 1.54914 0.86619 0.81885 0.81927 0.78542 1.20931 1.21631 1.20558 1.75122 0.95203 1.15595 1.25852 1.78296 1.21994 1.18644 0.87774 1.23355 0.90665 0.98508 0.90127 0.92221 0.91586 0.92351 0.91246 0.91485 0.91222 0.91298 0.89880 0.90341 0.90459 0.91247 0.91776 0.86484 0.88093 0.83916 0.79805 0.93360 0.93764 0.80488 0.93026 0.89123 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 7.88 37.16 0.29 -0.83 16 2 C -0.08 -0.57 3.14 -89.50 -0.28 -0.85 16 3 H 0.08 0.46 7.64 -51.93 -0.40 0.06 16 4 C -0.12 -0.87 6.36 -25.07 -0.16 -1.03 16 5 C -0.12 -1.16 6.93 -24.56 -0.17 -1.33 16 6 C -0.11 -1.24 5.63 -24.89 -0.14 -1.38 16 7 C -0.07 -0.72 0.77 -154.54 -0.12 -0.84 16 8 C -0.16 -1.34 6.87 37.16 0.26 -1.09 16 9 C 0.57 6.99 4.93 -10.99 -0.05 6.93 16 10 O -0.52 -8.91 16.30 5.56 0.09 -8.82 16 11 N -0.65 -5.89 2.35 -185.05 -0.43 -6.33 16 12 C 0.09 0.45 5.93 -8.36 -0.05 0.40 16 13 C 0.10 0.73 5.36 -67.67 -0.36 0.37 16 14 N -0.28 -3.57 3.56 -54.44 -0.19 -3.76 16 15 C -0.04 -0.61 10.52 -17.05 -0.18 -0.79 16 16 C -0.01 -0.18 6.62 -82.78 -0.55 -0.73 16 17 C 0.24 4.83 6.82 -5.20 -0.04 4.80 16 18 N -0.75 -18.84 5.40 -61.09 -0.33 -19.17 16 19 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 20 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 21 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 22 N -0.93 -29.79 13.97 55.49 0.78 -29.02 16 23 Si 0.88 23.69 27.74 -169.99 -4.71 18.97 16 24 H -0.28 -7.65 7.11 56.52 0.40 -7.24 16 25 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 26 H -0.28 -7.39 6.52 56.52 0.37 -7.02 16 27 N -0.25 -4.85 12.41 33.29 0.41 -4.44 16 28 N -0.09 -1.45 13.16 60.35 0.79 -0.66 16 29 C 0.10 0.78 8.42 -8.50 -0.07 0.70 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.38 3.93 -51.93 -0.20 0.18 16 32 H 0.06 0.54 7.69 -51.93 -0.40 0.14 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.45 7.84 -51.93 -0.41 0.04 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.20 7.02 -51.93 -0.36 0.84 16 38 H 0.08 0.80 7.66 -51.93 -0.40 0.40 16 39 H 0.08 0.59 7.85 -51.93 -0.41 0.19 16 40 H 0.07 0.77 6.39 -51.93 -0.33 0.44 16 41 H 0.06 0.38 5.04 -51.93 -0.26 0.12 16 42 H 0.12 0.18 7.14 -51.93 -0.37 -0.19 16 43 H 0.10 0.50 4.06 -51.93 -0.21 0.28 16 44 H 0.14 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.19 2.17 4.37 -52.48 -0.23 1.94 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.36 9.40 5.52 -40.82 -0.23 9.18 16 49 H 0.26 7.92 8.31 -40.82 -0.34 7.59 16 50 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 389.57 15.07 5.87 5.87 Total: -1.00 -38.65 389.57 -7.21 -45.86 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.60 Total: 4.17 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.88 Total: -2.67 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: 1.02 Total: -63.38 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.71 Total: 18.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.65 -7.21 -45.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105318825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.624 kcal (2) G-P(sol) polarization free energy of solvation -38.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds