Wall clock time and date at job start Wed Apr 1 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.01410 * 2 1 4 4 C 1.54265 * 110.03378 * 121.39223 * 2 1 3 5 5 C 1.54886 * 104.31278 * 95.65828 * 4 2 1 6 6 C 1.55229 * 102.58940 * 37.93255 * 5 4 2 7 7 C 1.53879 * 110.07474 * 238.58254 * 2 1 3 8 8 C 1.53000 * 110.02945 * 121.40932 * 7 2 1 9 9 C 1.50699 * 110.03048 * 359.97438 * 7 2 1 10 10 O 1.21281 * 119.99448 * 253.44529 * 9 7 2 11 11 N 1.34772 * 120.00157 * 73.44392 * 9 7 2 12 12 C 1.47073 * 136.05943 * 0.97146 * 11 9 7 13 13 C 1.53759 * 87.88650 * 152.96336 * 12 11 9 14 14 N 1.46502 * 114.57372 * 272.66263 * 13 12 11 15 15 C 1.35304 * 125.86769 * 3.48056 * 14 13 12 16 16 C 1.35357 * 106.17513 * 180.02562 * 15 14 13 17 17 C 1.50694 * 126.75398 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.47414 * 94.99698 * 17 16 15 19 19 C 1.36941 * 120.00057 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00173 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00076 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00259 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 120.00002 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46921 * 90.00537 * 23 21 19 25 25 H 1.48495 * 109.46986 * 210.00422 * 23 21 19 26 26 H 1.48505 * 109.46999 * 330.00287 * 23 21 19 27 27 N 1.33773 * 106.49383 * 359.97438 * 16 15 14 28 28 N 1.28638 * 108.88396 * 359.73936 * 27 16 15 29 29 C 1.47068 * 136.05693 * 181.34509 * 11 9 7 30 30 H 1.08999 * 109.46874 * 305.10639 * 1 2 3 31 31 H 1.09005 * 109.47023 * 65.10335 * 1 2 3 32 32 H 1.09001 * 109.46878 * 185.10104 * 1 2 3 33 33 H 1.09001 * 110.48853 * 214.40663 * 4 2 1 34 34 H 1.09004 * 110.48363 * 336.91203 * 4 2 1 35 35 H 1.09001 * 110.75452 * 156.32556 * 5 4 2 36 36 H 1.08999 * 110.75588 * 279.69335 * 5 4 2 37 37 H 1.08998 * 110.46975 * 203.39443 * 6 5 4 38 38 H 1.09005 * 110.47153 * 80.77763 * 6 5 4 39 39 H 1.08998 * 109.47686 * 70.56263 * 8 7 2 40 40 H 1.09001 * 109.46871 * 190.56267 * 8 7 2 41 41 H 1.09003 * 109.47199 * 310.55838 * 8 7 2 42 42 H 1.08994 * 113.46771 * 267.69811 * 12 11 9 43 43 H 1.09001 * 113.46376 * 38.13644 * 12 11 9 44 44 H 1.09000 * 114.08166 * 139.77889 * 13 12 11 45 45 H 1.08004 * 126.92109 * 359.97438 * 15 14 13 46 46 H 1.09002 * 109.47208 * 214.99641 * 17 16 15 47 47 H 1.09003 * 109.46942 * 334.99326 * 17 16 15 48 48 H 0.96999 * 120.00218 * 359.97438 * 18 17 16 49 49 H 0.96996 * 120.00085 * 179.97438 * 22 21 19 50 50 H 1.09000 * 113.46995 * 321.86070 * 29 11 9 51 51 H 1.08997 * 113.46838 * 92.24694 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 1.2372 5 6 2.3287 -2.1908 0.7230 6 6 2.8891 -1.9398 -0.7027 7 6 2.0582 -0.7534 -1.2334 8 6 2.9417 0.1710 -2.0735 9 6 0.9055 -1.2600 -2.0615 10 8 0.6350 -2.4422 -2.0651 11 7 0.1754 -0.3993 -2.7981 12 6 0.1944 1.0469 -3.0647 13 6 -0.4689 0.7482 -4.4194 14 7 0.4692 0.4501 -5.5044 15 6 1.8138 0.3561 -5.3865 16 6 2.2818 0.0694 -6.6238 17 6 3.7218 -0.1343 -7.0185 18 7 4.0376 -1.5646 -6.9927 19 6 5.2970 -1.9936 -7.3170 20 1 6.0573 -1.2777 -7.5921 21 6 5.5962 -3.3489 -7.2931 22 7 6.8068 -3.7613 -7.6043 23 14 4.2810 -4.5875 -6.8179 24 1 3.5495 -5.0240 -8.0343 25 1 4.9186 -5.7643 -6.1747 26 1 3.3293 -3.9587 -5.8669 27 7 1.2144 0.0023 -7.4274 28 7 0.1554 0.2269 -6.7326 29 6 -0.9951 -0.4920 -3.6837 30 1 -0.3633 0.5910 0.8407 31 1 -0.3633 0.4326 -0.9322 32 1 -0.3633 -1.0236 0.0914 33 1 2.9806 -0.2988 1.5973 34 1 1.3066 -0.7674 2.0263 35 1 3.0672 -2.6924 1.3484 36 1 1.4037 -2.7657 0.6790 37 1 2.7426 -2.8190 -1.3300 38 1 3.9455 -1.6751 -0.6559 39 1 3.8754 0.3612 -1.5443 40 1 3.1569 -0.3034 -3.0309 41 1 2.4221 1.1140 -2.2440 42 1 -0.4389 1.6213 -2.3886 43 1 1.1997 1.4588 -3.1533 44 1 -1.2427 1.4617 -4.7026 45 1 2.3968 0.4848 -4.4864 46 1 3.8815 0.2550 -8.0240 47 1 4.3687 0.3934 -6.3176 48 1 3.3550 -2.2077 -6.7453 49 1 7.0159 -4.7083 -7.5872 50 1 -1.0032 -1.3911 -4.2998 51 1 -1.9420 -0.3242 -3.1707 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105318825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:16 Heat of formation + Delta-G solvation = 103.571789 kcal Electronic energy + Delta-G solvation = -32675.583810 eV Core-core repulsion = 28613.520991 eV Total energy + Delta-G solvation = -4062.062819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.45677 -42.25699 -40.12404 -38.21366 -37.04338 -34.77816 -33.76041 -32.96692 -32.20512 -32.01196 -30.12955 -28.14836 -27.31328 -27.22453 -25.71828 -24.71533 -24.39472 -23.02842 -22.44419 -21.51311 -21.03971 -19.96498 -19.56182 -18.41555 -17.94165 -17.47523 -17.16217 -16.76060 -16.58767 -16.46440 -16.07005 -15.83226 -15.55606 -15.03834 -14.90598 -14.50612 -14.42451 -14.26869 -14.15824 -13.88150 -13.83726 -13.70675 -13.45420 -13.36783 -13.25299 -13.04966 -13.00522 -12.69844 -12.43155 -12.30629 -12.24583 -11.95168 -11.90769 -11.88687 -11.67111 -11.54413 -11.45559 -11.42702 -11.14062 -11.08318 -10.72992 -10.34922 -9.94043 -9.37305 -8.08977 -5.40618 0.47074 1.22285 1.26693 1.29276 1.33040 1.37838 1.51444 1.60573 2.38637 2.67720 3.05425 3.22342 3.30670 3.39631 3.48833 3.63095 3.72259 3.81303 3.89500 3.91841 4.04604 4.14492 4.22389 4.28114 4.31819 4.34419 4.38376 4.43982 4.46678 4.50589 4.56159 4.59803 4.66940 4.77111 4.79472 4.87102 4.93545 4.98897 5.02579 5.04828 5.08670 5.12555 5.16408 5.23929 5.26854 5.37429 5.47861 5.60318 5.70517 6.15609 6.47798 6.99164 7.01339 7.41175 7.74744 7.93542 9.12336 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009588 B = 0.004226 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.733653 B = 6624.065318 C = 8407.725950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.073 4.073 3 H 0.115 0.885 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.119 4.119 7 C -0.073 4.073 8 C -0.156 4.156 9 C 0.560 3.440 10 O -0.589 6.589 11 N -0.656 5.656 12 C 0.098 3.902 13 C 0.093 3.907 14 N -0.265 5.265 15 C -0.021 4.021 16 C -0.042 4.042 17 C 0.238 3.762 18 N -0.755 5.755 19 C -0.226 4.226 20 H 0.076 0.924 21 C -0.046 4.046 22 N -0.974 5.974 23 Si 0.937 3.063 24 H -0.284 1.284 25 H -0.288 1.288 26 H -0.277 1.277 27 N -0.294 5.294 28 N -0.098 5.098 29 C 0.093 3.907 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.024 0.976 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.038 0.962 41 H 0.099 0.901 42 H 0.174 0.826 43 H 0.110 0.890 44 H 0.190 0.810 45 H 0.211 0.789 46 H 0.040 0.960 47 H 0.068 0.932 48 H 0.358 0.642 49 H 0.259 0.741 50 H 0.047 0.953 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.574 19.452 23.355 35.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.092 4.092 3 H 0.133 0.867 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.156 4.156 7 C -0.076 4.076 8 C -0.212 4.212 9 C 0.352 3.648 10 O -0.469 6.469 11 N -0.392 5.392 12 C -0.023 4.023 13 C -0.008 4.008 14 N -0.059 5.059 15 C -0.173 4.173 16 C -0.180 4.180 17 C 0.111 3.889 18 N -0.400 5.400 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.238 4.238 22 N -0.625 5.625 23 Si 0.767 3.233 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.203 1.203 27 N -0.161 5.161 28 N -0.076 5.076 29 C -0.031 4.031 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.043 0.957 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.057 0.943 41 H 0.117 0.883 42 H 0.191 0.809 43 H 0.128 0.872 44 H 0.207 0.793 45 H 0.228 0.772 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.189 0.811 49 H 0.068 0.932 50 H 0.066 0.934 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.550 18.616 22.389 35.072 hybrid contribution 0.385 -2.081 0.393 2.153 sum -19.165 16.534 22.783 34.055 Atomic orbital electron populations 1.22240 0.94595 1.00958 1.04058 1.21832 0.96098 1.00179 0.91063 0.86691 1.22450 1.02038 0.93703 0.96948 1.22503 1.00091 0.98358 0.95112 1.22515 0.99569 0.96469 0.97091 1.21529 0.92663 0.97329 0.96069 1.22327 1.00786 0.99174 0.98949 1.20516 0.82849 0.84287 0.77124 1.90704 1.71531 1.18816 1.65815 1.49820 1.31325 1.10466 1.47636 1.24174 1.05202 0.81976 0.90984 1.23451 0.92798 1.00364 0.84192 1.47181 1.06286 1.44171 1.08273 1.23676 0.84944 1.07497 1.01184 1.22259 0.96992 1.07163 0.91573 1.18955 0.85762 0.84600 0.99618 1.42742 1.10070 1.03239 1.83937 1.19086 0.88053 0.92183 1.36370 0.90613 1.25170 0.97722 0.98257 1.02691 1.69810 1.20497 1.14928 1.57219 0.85692 0.79634 0.79920 0.78045 1.21015 1.21475 1.20340 1.75056 0.96055 1.17375 1.27645 1.78165 1.21171 1.19067 0.89229 1.23631 0.92343 0.97040 0.90039 0.90085 0.90196 0.95653 0.89595 0.90548 0.90721 0.93733 0.94523 0.89540 0.89196 0.94315 0.88273 0.80872 0.87250 0.79265 0.77218 0.94179 0.91374 0.81054 0.93175 0.93442 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 7.88 71.98 0.57 -1.02 16 2 C -0.07 -0.77 3.14 -10.07 -0.03 -0.80 16 3 H 0.12 0.54 7.64 -2.39 -0.02 0.52 16 4 C -0.11 -1.36 6.36 31.67 0.20 -1.16 16 5 C -0.12 -2.37 6.93 32.00 0.22 -2.15 16 6 C -0.12 -2.77 5.63 31.79 0.18 -2.59 16 7 C -0.07 -1.30 0.77 -52.20 -0.04 -1.34 16 8 C -0.16 -2.19 6.87 71.98 0.49 -1.70 16 9 C 0.56 13.44 4.93 87.66 0.43 13.87 16 10 O -0.59 -21.32 16.30 -3.03 -0.05 -21.37 16 11 N -0.66 -10.02 2.35 -857.78 -2.01 -12.04 16 12 C 0.10 0.41 5.93 83.27 0.49 0.90 16 13 C 0.09 0.88 5.36 45.55 0.24 1.13 16 14 N -0.27 -6.03 3.56 -326.13 -1.16 -7.19 16 15 C -0.02 -0.57 10.52 83.49 0.88 0.31 16 16 C -0.04 -1.49 6.62 41.60 0.28 -1.21 16 17 C 0.24 9.64 6.82 85.63 0.58 10.23 16 18 N -0.75 -38.30 5.40 -347.19 -1.87 -40.18 16 19 C -0.23 -13.33 10.47 84.03 0.88 -12.45 16 20 H 0.08 4.68 8.06 -2.91 -0.02 4.65 16 21 C -0.05 -2.83 5.50 84.86 0.47 -2.37 16 22 N -0.97 -63.72 13.97 21.65 0.30 -63.41 16 23 Si 0.94 50.40 27.74 68.60 1.90 52.30 16 24 H -0.28 -15.16 7.11 99.48 0.71 -14.45 16 25 H -0.29 -15.31 7.11 99.48 0.71 -14.60 16 26 H -0.28 -14.62 6.52 99.48 0.65 -13.98 16 27 N -0.29 -11.36 12.41 -48.60 -0.60 -11.96 16 28 N -0.10 -3.08 13.16 37.02 0.49 -2.59 16 29 C 0.09 1.21 8.42 83.18 0.70 1.91 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.50 3.93 -2.38 -0.01 0.49 16 32 H 0.02 0.43 7.69 -2.39 -0.02 0.41 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.79 7.84 -2.38 -0.02 0.78 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.04 1.18 7.02 -2.39 -0.02 1.16 16 38 H 0.09 1.78 7.66 -2.38 -0.02 1.76 16 39 H 0.09 1.07 7.85 -2.39 -0.02 1.05 16 40 H 0.04 0.79 6.39 -2.39 -0.02 0.78 16 41 H 0.10 0.63 5.04 -2.39 -0.01 0.62 16 42 H 0.17 -0.99 7.14 -2.39 -0.02 -1.01 16 43 H 0.11 0.36 4.06 -2.39 -0.01 0.35 16 44 H 0.19 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.21 4.30 4.37 -2.91 -0.01 4.29 16 46 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.36 18.73 5.52 -92.71 -0.51 18.22 16 49 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 50 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -92.85 389.57 3.94 -88.92 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.40 Total: 15.96 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 6.55 Total: 1.56 kcal Atomic # 7 Polarization: -132.51 SS G_CDS: -4.86 Total: -137.37 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.37 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 1.90 Total: 52.30 kcal Total: -92.85 3.94 -88.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105318825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.490 kcal (2) G-P(sol) polarization free energy of solvation -92.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds