Wall clock time and date at job start Wed Apr 1 2020 06:20:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09003 * 110.01678 * 2 1
4 4 C 1.54265 * 110.03369 * 238.60292 * 2 1 3
5 5 C 1.54883 * 104.19684 * 217.10597 * 4 2 1
6 6 C 1.54886 * 102.74937 * 37.94410 * 5 4 2
7 7 C 1.54226 * 110.02257 * 121.39850 * 2 1 3
8 8 C 1.53000 * 110.14294 * 0.03538 * 7 2 1
9 9 C 1.50699 * 110.08365 * 238.49945 * 7 2 1
10 10 O 1.21282 * 120.00265 * 6.66608 * 9 7 2
11 11 N 1.34777 * 119.99834 * 186.67145 * 9 7 2
12 12 C 1.47073 * 136.06004 * 184.50955 * 11 9 7
13 13 C 1.53754 * 87.88734 * 152.95669 * 12 11 9
14 14 N 1.46502 * 114.57756 * 272.66296 * 13 12 11
15 15 C 1.35311 * 125.86618 * 8.58788 * 14 13 12
16 16 C 1.35350 * 106.17755 * 179.90739 * 15 14 13
17 17 C 1.50696 * 126.75376 * 180.12458 * 16 15 14
18 18 N 1.46504 * 109.47112 * 95.29228 * 17 16 15
19 19 C 1.36937 * 119.99986 * 179.97438 * 18 17 16
20 20 H 1.07996 * 120.00314 * 0.02562 * 19 18 17
21 21 C 1.38819 * 119.99895 * 180.02562 * 19 18 17
22 22 N 1.31622 * 119.99762 * 0.02562 * 21 19 18
23 23 Si 1.86797 * 119.99888 * 180.02562 * 21 19 18
24 24 H 1.48493 * 109.47449 * 60.00124 * 23 21 19
25 25 H 1.48507 * 109.46807 * 180.02562 * 23 21 19
26 26 H 1.48499 * 109.47102 * 299.99806 * 23 21 19
27 27 N 1.33769 * 106.49226 * 0.35083 * 16 15 14
28 28 N 1.28628 * 108.88982 * 359.77395 * 27 16 15
29 29 C 1.47070 * 136.05912 * 4.87023 * 11 9 7
30 30 H 1.08999 * 109.47285 * 179.97438 * 1 2 3
31 31 H 1.09007 * 109.47047 * 299.93833 * 1 2 3
32 32 H 1.09001 * 109.46805 * 59.93887 * 1 2 3
33 33 H 1.09000 * 110.47963 * 98.42605 * 4 2 1
34 34 H 1.09002 * 110.59517 * 335.84294 * 4 2 1
35 35 H 1.09000 * 110.75567 * 279.62506 * 5 4 2
36 36 H 1.09002 * 110.91148 * 156.33059 * 5 4 2
37 37 H 1.09000 * 110.48884 * 80.73675 * 6 5 4
38 38 H 1.08999 * 110.48535 * 203.24105 * 6 5 4
39 39 H 1.09005 * 109.46797 * 178.48011 * 8 7 2
40 40 H 1.09000 * 109.47350 * 298.47938 * 8 7 2
41 41 H 1.08996 * 109.47181 * 58.48346 * 8 7 2
42 42 H 1.08992 * 113.46233 * 267.69162 * 12 11 9
43 43 H 1.08999 * 113.46233 * 38.12635 * 12 11 9
44 44 H 1.08994 * 114.08722 * 139.78165 * 13 12 11
45 45 H 1.08003 * 126.91075 * 0.02562 * 15 14 13
46 46 H 1.09003 * 109.47501 * 215.29204 * 17 16 15
47 47 H 1.09000 * 109.47675 * 335.29650 * 17 16 15
48 48 H 0.97001 * 120.00350 * 0.02562 * 18 17 16
49 49 H 0.97001 * 119.99769 * 180.02562 * 22 21 19
50 50 H 1.09009 * 113.46521 * 321.87163 * 29 11 9
51 51 H 1.08997 * 113.46584 * 92.24958 * 29 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9031 1.0242 0.0000
4 6 2.0585 -0.7550 -1.2371
5 6 3.3137 -1.5005 -0.7196
6 6 2.8875 -1.9409 0.7028
7 6 2.0581 -0.7549 1.2368
8 6 0.8889 -1.2698 2.0787
9 6 2.9301 0.1537 2.0644
10 8 3.0238 1.3289 1.7797
11 7 3.6060 -0.3396 3.1210
12 6 4.4599 0.2126 4.1835
13 6 4.0290 -0.9704 5.0661
14 7 2.7957 -0.7472 5.8246
15 6 1.9574 0.3056 5.6831
16 6 0.9545 0.1111 6.5709
17 6 -0.2343 1.0086 6.7993
18 7 -1.3703 0.5245 6.0111
19 6 -2.5685 1.1856 6.0594
20 1 -2.6760 2.0642 6.6782
21 6 -3.6451 0.7265 5.3129
22 7 -3.5143 -0.3445 4.5591
23 14 -5.2794 1.6288 5.3782
24 1 -5.0918 3.0270 4.9147
25 1 -6.2593 0.9424 4.4984
26 1 -5.7867 1.6338 6.7739
27 7 1.2288 -1.0320 7.2093
28 7 2.3261 -1.5159 6.7440
29 6 3.8195 -1.6679 3.7150
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5129 0.8906
32 1 -0.3633 0.5148 -0.8895
33 1 2.3297 -0.0528 -2.0254
34 1 1.3152 -1.4653 -1.5993
35 1 4.1710 -0.8288 -0.6754
36 1 3.5356 -2.3673 -1.3421
37 1 2.2772 -2.8428 0.6561
38 1 3.7638 -2.1066 1.3295
39 1 1.2739 -1.8242 2.9347
40 1 0.2946 -0.4262 2.4297
41 1 0.2653 -1.9260 1.4716
42 1 5.5212 0.2050 3.9353
43 1 4.1202 1.1795 4.5547
44 1 4.8339 -1.3932 5.6673
45 1 2.0658 1.1334 4.9979
46 1 -0.4968 1.0018 7.8573
47 1 0.0135 2.0249 6.4931
48 1 -1.2740 -0.2649 5.4556
49 1 -4.2665 -0.6651 4.0373
50 1 2.9341 -2.3033 3.6872
51 1 4.7114 -2.1717 3.3426
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001105318827.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:20:25
Heat of formation + Delta-G solvation = 119.127220 kcal
Electronic energy + Delta-G solvation = -32489.944971 eV
Core-core repulsion = 28428.556686 eV
Total energy + Delta-G solvation = -4061.388285 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-43.14736 -41.15613 -39.35257 -37.30378 -34.95243 -33.35661 -32.00379 -31.80892
-31.34920 -29.94281 -29.16209 -26.75337 -25.79987 -25.54653 -25.33998 -23.99473
-22.78880 -21.77454 -21.02507 -20.76046 -19.72091 -18.49064 -17.57413 -16.97336
-16.93533 -16.87716 -16.04985 -15.76555 -15.11750 -14.78091 -14.64069 -14.47205
-13.94973 -13.89257 -13.70548 -13.61310 -13.51780 -13.29931 -13.01631 -12.91810
-12.64881 -12.63480 -12.04533 -11.94928 -11.71628 -11.52005 -11.32003 -11.25052
-11.15692 -10.90282 -10.88092 -10.79237 -10.77601 -10.64214 -10.48880 -10.37569
-10.11492 -9.96840 -9.74971 -9.67060 -9.20040 -8.86249 -8.82033 -6.88961
-5.71452 -3.00516 1.74437 2.21395 2.33257 2.47859 2.89160 3.42751
3.48515 3.52481 3.53679 3.94127 4.18612 4.29333 4.39101 4.48494
4.65018 4.67911 4.73911 4.78438 4.90759 5.02032 5.08141 5.10621
5.14798 5.20561 5.29435 5.32235 5.36753 5.43965 5.49095 5.53957
5.56948 5.64901 5.65227 5.79977 5.80587 5.85462 5.90022 5.93338
6.07191 6.18593 6.19761 6.25281 6.39950 6.42282 6.53277 6.66760
6.74315 6.79009 7.29856 7.73514 7.92833 8.45671 8.81023 9.57798
10.12851 10.49424 11.51122
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.008737 B = 0.004210 C = 0.003097
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3204.061166 B = 6649.902260 C = 9038.332659
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.085 4.085
3 H 0.093 0.907
4 C -0.118 4.118
5 C -0.125 4.125
6 C -0.115 4.115
7 C -0.072 4.072
8 C -0.137 4.137
9 C 0.565 3.435
10 O -0.528 6.528
11 N -0.648 5.648
12 C 0.101 3.899
13 C 0.104 3.896
14 N -0.284 5.284
15 C -0.032 4.032
16 C -0.004 4.004
17 C 0.232 3.768
18 N -0.724 5.724
19 C -0.240 4.240
20 H 0.072 0.928
21 C -0.010 4.010
22 N -0.931 5.931
23 Si 0.907 3.093
24 H -0.286 1.286
25 H -0.291 1.291
26 H -0.286 1.286
27 N -0.249 5.249
28 N -0.092 5.092
29 C 0.092 3.908
30 H 0.059 0.941
31 H 0.065 0.935
32 H 0.053 0.947
33 H 0.065 0.935
34 H 0.069 0.931
35 H 0.064 0.936
36 H 0.068 0.932
37 H 0.079 0.921
38 H 0.065 0.935
39 H 0.051 0.949
40 H 0.074 0.926
41 H 0.074 0.926
42 H 0.113 0.887
43 H 0.093 0.907
44 H 0.143 0.857
45 H 0.181 0.819
46 H 0.039 0.961
47 H 0.036 0.964
48 H 0.385 0.615
49 H 0.255 0.745
50 H 0.095 0.905
51 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.491 -4.202 -9.118 23.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.103 4.103
3 H 0.112 0.888
4 C -0.156 4.156
5 C -0.162 4.162
6 C -0.152 4.152
7 C -0.075 4.075
8 C -0.194 4.194
9 C 0.355 3.645
10 O -0.403 6.403
11 N -0.385 5.385
12 C -0.022 4.022
13 C 0.000 4.000
14 N -0.077 5.077
15 C -0.182 4.182
16 C -0.141 4.141
17 C 0.103 3.897
18 N -0.369 5.369
19 C -0.371 4.371
20 H 0.090 0.910
21 C -0.207 4.207
22 N -0.579 5.579
23 Si 0.738 3.262
24 H -0.213 1.213
25 H -0.217 1.217
26 H -0.212 1.212
27 N -0.117 5.117
28 N -0.071 5.071
29 C -0.032 4.032
30 H 0.078 0.922
31 H 0.084 0.916
32 H 0.072 0.928
33 H 0.084 0.916
34 H 0.087 0.913
35 H 0.082 0.918
36 H 0.087 0.913
37 H 0.098 0.902
38 H 0.084 0.916
39 H 0.070 0.930
40 H 0.093 0.907
41 H 0.093 0.907
42 H 0.130 0.870
43 H 0.111 0.889
44 H 0.160 0.840
45 H 0.198 0.802
46 H 0.057 0.943
47 H 0.054 0.946
48 H 0.218 0.782
49 H 0.064 0.936
50 H 0.113 0.887
51 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 21.473 -4.644 -8.638 23.607
hybrid contribution -0.866 1.079 -0.855 1.626
sum 20.607 -3.565 -9.492 22.966
Atomic orbital electron populations
1.21989 0.94013 1.02136 1.02328 1.21870 0.96454 1.00498 0.91512
0.88849 1.22445 0.96977 0.98929 0.97246 1.22481 0.98046 0.99898
0.95796 1.22545 0.99058 0.97057 0.96557 1.21453 0.95340 0.95043
0.95651 1.21981 0.96362 1.02333 0.98713 1.20213 0.78322 0.88329
0.77589 1.90692 1.64246 1.17439 1.67926 1.49589 1.49686 1.10394
1.28868 1.23364 0.97014 0.98097 0.83773 1.22725 0.85051 0.99844
0.92374 1.46695 1.18160 1.16416 1.26459 1.23250 0.93685 0.96157
1.05155 1.22434 0.98802 0.96152 0.96740 1.18948 0.82604 0.91889
0.96250 1.42259 1.07294 1.33916 1.53390 1.19178 0.88120 1.07528
1.22249 0.91026 1.24714 0.98108 0.98036 0.99793 1.69667 1.31072
1.24805 1.32389 0.86266 0.83755 0.78838 0.77314 1.21262 1.21738
1.21222 1.75103 1.05949 1.08848 1.21765 1.78281 1.07955 1.17931
1.02915 1.23541 1.03861 0.87830 0.88001 0.92221 0.91553 0.92827
0.91601 0.91273 0.91762 0.91312 0.90233 0.91645 0.92977 0.90656
0.90742 0.86967 0.88907 0.83994 0.80173 0.94301 0.94610 0.78151
0.93553 0.88678 0.87057
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.91 7.89 37.16 0.29 -1.62 16
2 C -0.08 -1.03 3.10 -89.32 -0.28 -1.31 16
3 H 0.09 1.34 6.43 -51.93 -0.33 1.00 16
4 C -0.12 -1.14 6.36 -25.08 -0.16 -1.30 16
5 C -0.12 -1.06 6.91 -24.74 -0.17 -1.23 16
6 C -0.11 -1.02 5.59 -25.08 -0.14 -1.16 16
7 C -0.07 -0.85 0.71 -154.36 -0.11 -0.95 16
8 C -0.14 -1.86 7.14 37.16 0.27 -1.60 16
9 C 0.56 7.39 6.73 -10.99 -0.07 7.32 16
10 O -0.53 -8.79 16.02 5.56 0.09 -8.70 16
11 N -0.65 -6.38 3.25 -185.07 -0.60 -6.98 16
12 C 0.10 0.74 7.80 -8.37 -0.07 0.67 16
13 C 0.10 0.81 5.36 -67.68 -0.36 0.45 16
14 N -0.28 -3.76 3.56 -54.44 -0.19 -3.95 16
15 C -0.03 -0.50 10.39 -17.05 -0.18 -0.68 16
16 C 0.00 -0.07 6.62 -82.78 -0.55 -0.62 16
17 C 0.23 5.00 6.82 -5.19 -0.04 4.96 16
18 N -0.72 -19.04 5.59 -61.08 -0.34 -19.38 16
19 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16
20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16
21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16
22 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16
23 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16
24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
27 N -0.25 -4.97 12.41 33.29 0.41 -4.56 16
28 N -0.09 -1.54 13.17 60.35 0.79 -0.75 16
29 C 0.09 0.65 6.17 -8.51 -0.05 0.60 16
30 H 0.06 0.73 6.62 -51.93 -0.34 0.39 16
31 H 0.07 1.02 6.88 -51.92 -0.36 0.66 16
32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
34 H 0.07 0.63 7.86 -51.93 -0.41 0.22 16
35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
37 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16
38 H 0.06 0.50 5.86 -51.93 -0.30 0.19 16
39 H 0.05 0.71 6.05 -51.93 -0.31 0.39 16
40 H 0.07 1.28 6.89 -51.93 -0.36 0.92 16
41 H 0.07 0.96 6.62 -51.93 -0.34 0.61 16
42 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16
43 H 0.09 0.80 7.01 -51.93 -0.36 0.44 16
44 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16
45 H 0.18 2.66 7.23 -52.48 -0.38 2.28 16
46 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16
47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
48 H 0.38 10.84 7.66 -40.82 -0.31 10.52 16
49 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16
50 H 0.09 0.84 6.34 -51.92 -0.33 0.52 16
51 H 0.11 0.39 7.98 -51.93 -0.41 -0.02 16
LS Contribution 399.55 15.07 6.02 6.02
Total: -1.00 -35.67 399.55 -7.88 -43.55
By element:
Atomic # 1 Polarization: 16.44 SS G_CDS: -7.90 Total: 8.54 kcal
Atomic # 6 Polarization: -1.98 SS G_CDS: -1.86 Total: -3.84 kcal
Atomic # 7 Polarization: -64.01 SS G_CDS: 0.79 Total: -63.21 kcal
Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal
Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -35.67 -7.88 -43.55 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001105318827.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 162.678 kcal
(2) G-P(sol) polarization free energy of solvation -35.674 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.003 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal
(6) G-S(sol) free energy of system = (1) + (5) 119.127 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds