Wall clock time and date at job start Wed Apr 1 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.01678 * 2 1 4 4 C 1.54265 * 110.03369 * 238.60292 * 2 1 3 5 5 C 1.54883 * 104.19684 * 217.10597 * 4 2 1 6 6 C 1.54886 * 102.74937 * 37.94410 * 5 4 2 7 7 C 1.54226 * 110.02257 * 121.39850 * 2 1 3 8 8 C 1.53000 * 110.14294 * 0.03538 * 7 2 1 9 9 C 1.50699 * 110.08365 * 238.49945 * 7 2 1 10 10 O 1.21282 * 120.00265 * 6.66608 * 9 7 2 11 11 N 1.34777 * 119.99834 * 186.67145 * 9 7 2 12 12 C 1.47073 * 136.06004 * 184.50955 * 11 9 7 13 13 C 1.53754 * 87.88734 * 152.95669 * 12 11 9 14 14 N 1.46502 * 114.57756 * 272.66296 * 13 12 11 15 15 C 1.35311 * 125.86618 * 8.58788 * 14 13 12 16 16 C 1.35350 * 106.17755 * 179.90739 * 15 14 13 17 17 C 1.50696 * 126.75376 * 180.12458 * 16 15 14 18 18 N 1.46504 * 109.47112 * 95.29228 * 17 16 15 19 19 C 1.36937 * 119.99986 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00314 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99895 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99762 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99888 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47449 * 60.00124 * 23 21 19 25 25 H 1.48507 * 109.46807 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47102 * 299.99806 * 23 21 19 27 27 N 1.33769 * 106.49226 * 0.35083 * 16 15 14 28 28 N 1.28628 * 108.88982 * 359.77395 * 27 16 15 29 29 C 1.47070 * 136.05912 * 4.87023 * 11 9 7 30 30 H 1.08999 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47047 * 299.93833 * 1 2 3 32 32 H 1.09001 * 109.46805 * 59.93887 * 1 2 3 33 33 H 1.09000 * 110.47963 * 98.42605 * 4 2 1 34 34 H 1.09002 * 110.59517 * 335.84294 * 4 2 1 35 35 H 1.09000 * 110.75567 * 279.62506 * 5 4 2 36 36 H 1.09002 * 110.91148 * 156.33059 * 5 4 2 37 37 H 1.09000 * 110.48884 * 80.73675 * 6 5 4 38 38 H 1.08999 * 110.48535 * 203.24105 * 6 5 4 39 39 H 1.09005 * 109.46797 * 178.48011 * 8 7 2 40 40 H 1.09000 * 109.47350 * 298.47938 * 8 7 2 41 41 H 1.08996 * 109.47181 * 58.48346 * 8 7 2 42 42 H 1.08992 * 113.46233 * 267.69162 * 12 11 9 43 43 H 1.08999 * 113.46233 * 38.12635 * 12 11 9 44 44 H 1.08994 * 114.08722 * 139.78165 * 13 12 11 45 45 H 1.08003 * 126.91075 * 0.02562 * 15 14 13 46 46 H 1.09003 * 109.47501 * 215.29204 * 17 16 15 47 47 H 1.09000 * 109.47675 * 335.29650 * 17 16 15 48 48 H 0.97001 * 120.00350 * 0.02562 * 18 17 16 49 49 H 0.97001 * 119.99769 * 180.02562 * 22 21 19 50 50 H 1.09009 * 113.46521 * 321.87163 * 29 11 9 51 51 H 1.08997 * 113.46584 * 92.24958 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3137 -1.5005 -0.7196 6 6 2.8875 -1.9409 0.7028 7 6 2.0581 -0.7549 1.2368 8 6 0.8889 -1.2698 2.0787 9 6 2.9301 0.1537 2.0644 10 8 3.0238 1.3289 1.7797 11 7 3.6060 -0.3396 3.1210 12 6 4.4599 0.2126 4.1835 13 6 4.0290 -0.9704 5.0661 14 7 2.7957 -0.7472 5.8246 15 6 1.9574 0.3056 5.6831 16 6 0.9545 0.1111 6.5709 17 6 -0.2343 1.0086 6.7993 18 7 -1.3703 0.5245 6.0111 19 6 -2.5685 1.1856 6.0594 20 1 -2.6760 2.0642 6.6782 21 6 -3.6451 0.7265 5.3129 22 7 -3.5143 -0.3445 4.5591 23 14 -5.2794 1.6288 5.3782 24 1 -5.0918 3.0270 4.9147 25 1 -6.2593 0.9424 4.4984 26 1 -5.7867 1.6338 6.7739 27 7 1.2288 -1.0320 7.2093 28 7 2.3261 -1.5159 6.7440 29 6 3.8195 -1.6679 3.7150 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5129 0.8906 32 1 -0.3633 0.5148 -0.8895 33 1 2.3297 -0.0528 -2.0254 34 1 1.3152 -1.4653 -1.5993 35 1 4.1710 -0.8288 -0.6754 36 1 3.5356 -2.3673 -1.3421 37 1 2.2772 -2.8428 0.6561 38 1 3.7638 -2.1066 1.3295 39 1 1.2739 -1.8242 2.9347 40 1 0.2946 -0.4262 2.4297 41 1 0.2653 -1.9260 1.4716 42 1 5.5212 0.2050 3.9353 43 1 4.1202 1.1795 4.5547 44 1 4.8339 -1.3932 5.6673 45 1 2.0658 1.1334 4.9979 46 1 -0.4968 1.0018 7.8573 47 1 0.0135 2.0249 6.4931 48 1 -1.2740 -0.2649 5.4556 49 1 -4.2665 -0.6651 4.0373 50 1 2.9341 -2.3033 3.6872 51 1 4.7114 -2.1717 3.3426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105318827.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:25 Heat of formation + Delta-G solvation = 119.127220 kcal Electronic energy + Delta-G solvation = -32489.944971 eV Core-core repulsion = 28428.556686 eV Total energy + Delta-G solvation = -4061.388285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.14736 -41.15613 -39.35257 -37.30378 -34.95243 -33.35661 -32.00379 -31.80892 -31.34920 -29.94281 -29.16209 -26.75337 -25.79987 -25.54653 -25.33998 -23.99473 -22.78880 -21.77454 -21.02507 -20.76046 -19.72091 -18.49064 -17.57413 -16.97336 -16.93533 -16.87716 -16.04985 -15.76555 -15.11750 -14.78091 -14.64069 -14.47205 -13.94973 -13.89257 -13.70548 -13.61310 -13.51780 -13.29931 -13.01631 -12.91810 -12.64881 -12.63480 -12.04533 -11.94928 -11.71628 -11.52005 -11.32003 -11.25052 -11.15692 -10.90282 -10.88092 -10.79237 -10.77601 -10.64214 -10.48880 -10.37569 -10.11492 -9.96840 -9.74971 -9.67060 -9.20040 -8.86249 -8.82033 -6.88961 -5.71452 -3.00516 1.74437 2.21395 2.33257 2.47859 2.89160 3.42751 3.48515 3.52481 3.53679 3.94127 4.18612 4.29333 4.39101 4.48494 4.65018 4.67911 4.73911 4.78438 4.90759 5.02032 5.08141 5.10621 5.14798 5.20561 5.29435 5.32235 5.36753 5.43965 5.49095 5.53957 5.56948 5.64901 5.65227 5.79977 5.80587 5.85462 5.90022 5.93338 6.07191 6.18593 6.19761 6.25281 6.39950 6.42282 6.53277 6.66760 6.74315 6.79009 7.29856 7.73514 7.92833 8.45671 8.81023 9.57798 10.12851 10.49424 11.51122 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.004210 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.061166 B = 6649.902260 C = 9038.332659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.093 0.907 4 C -0.118 4.118 5 C -0.125 4.125 6 C -0.115 4.115 7 C -0.072 4.072 8 C -0.137 4.137 9 C 0.565 3.435 10 O -0.528 6.528 11 N -0.648 5.648 12 C 0.101 3.899 13 C 0.104 3.896 14 N -0.284 5.284 15 C -0.032 4.032 16 C -0.004 4.004 17 C 0.232 3.768 18 N -0.724 5.724 19 C -0.240 4.240 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 N -0.249 5.249 28 N -0.092 5.092 29 C 0.092 3.908 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.143 0.857 45 H 0.181 0.819 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.095 0.905 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.491 -4.202 -9.118 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.112 0.888 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.152 4.152 7 C -0.075 4.075 8 C -0.194 4.194 9 C 0.355 3.645 10 O -0.403 6.403 11 N -0.385 5.385 12 C -0.022 4.022 13 C 0.000 4.000 14 N -0.077 5.077 15 C -0.182 4.182 16 C -0.141 4.141 17 C 0.103 3.897 18 N -0.369 5.369 19 C -0.371 4.371 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 N -0.117 5.117 28 N -0.071 5.071 29 C -0.032 4.032 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.130 0.870 43 H 0.111 0.889 44 H 0.160 0.840 45 H 0.198 0.802 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.113 0.887 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 21.473 -4.644 -8.638 23.607 hybrid contribution -0.866 1.079 -0.855 1.626 sum 20.607 -3.565 -9.492 22.966 Atomic orbital electron populations 1.21989 0.94013 1.02136 1.02328 1.21870 0.96454 1.00498 0.91512 0.88849 1.22445 0.96977 0.98929 0.97246 1.22481 0.98046 0.99898 0.95796 1.22545 0.99058 0.97057 0.96557 1.21453 0.95340 0.95043 0.95651 1.21981 0.96362 1.02333 0.98713 1.20213 0.78322 0.88329 0.77589 1.90692 1.64246 1.17439 1.67926 1.49589 1.49686 1.10394 1.28868 1.23364 0.97014 0.98097 0.83773 1.22725 0.85051 0.99844 0.92374 1.46695 1.18160 1.16416 1.26459 1.23250 0.93685 0.96157 1.05155 1.22434 0.98802 0.96152 0.96740 1.18948 0.82604 0.91889 0.96250 1.42259 1.07294 1.33916 1.53390 1.19178 0.88120 1.07528 1.22249 0.91026 1.24714 0.98108 0.98036 0.99793 1.69667 1.31072 1.24805 1.32389 0.86266 0.83755 0.78838 0.77314 1.21262 1.21738 1.21222 1.75103 1.05949 1.08848 1.21765 1.78281 1.07955 1.17931 1.02915 1.23541 1.03861 0.87830 0.88001 0.92221 0.91553 0.92827 0.91601 0.91273 0.91762 0.91312 0.90233 0.91645 0.92977 0.90656 0.90742 0.86967 0.88907 0.83994 0.80173 0.94301 0.94610 0.78151 0.93553 0.88678 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 7.89 37.16 0.29 -1.62 16 2 C -0.08 -1.03 3.10 -89.32 -0.28 -1.31 16 3 H 0.09 1.34 6.43 -51.93 -0.33 1.00 16 4 C -0.12 -1.14 6.36 -25.08 -0.16 -1.30 16 5 C -0.12 -1.06 6.91 -24.74 -0.17 -1.23 16 6 C -0.11 -1.02 5.59 -25.08 -0.14 -1.16 16 7 C -0.07 -0.85 0.71 -154.36 -0.11 -0.95 16 8 C -0.14 -1.86 7.14 37.16 0.27 -1.60 16 9 C 0.56 7.39 6.73 -10.99 -0.07 7.32 16 10 O -0.53 -8.79 16.02 5.56 0.09 -8.70 16 11 N -0.65 -6.38 3.25 -185.07 -0.60 -6.98 16 12 C 0.10 0.74 7.80 -8.37 -0.07 0.67 16 13 C 0.10 0.81 5.36 -67.68 -0.36 0.45 16 14 N -0.28 -3.76 3.56 -54.44 -0.19 -3.95 16 15 C -0.03 -0.50 10.39 -17.05 -0.18 -0.68 16 16 C 0.00 -0.07 6.62 -82.78 -0.55 -0.62 16 17 C 0.23 5.00 6.82 -5.19 -0.04 4.96 16 18 N -0.72 -19.04 5.59 -61.08 -0.34 -19.38 16 19 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 23 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 N -0.25 -4.97 12.41 33.29 0.41 -4.56 16 28 N -0.09 -1.54 13.17 60.35 0.79 -0.75 16 29 C 0.09 0.65 6.17 -8.51 -0.05 0.60 16 30 H 0.06 0.73 6.62 -51.93 -0.34 0.39 16 31 H 0.07 1.02 6.88 -51.92 -0.36 0.66 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.63 7.86 -51.93 -0.41 0.22 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 38 H 0.06 0.50 5.86 -51.93 -0.30 0.19 16 39 H 0.05 0.71 6.05 -51.93 -0.31 0.39 16 40 H 0.07 1.28 6.89 -51.93 -0.36 0.92 16 41 H 0.07 0.96 6.62 -51.93 -0.34 0.61 16 42 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.80 7.01 -51.93 -0.36 0.44 16 44 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.18 2.66 7.23 -52.48 -0.38 2.28 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.38 10.84 7.66 -40.82 -0.31 10.52 16 49 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 50 H 0.09 0.84 6.34 -51.92 -0.33 0.52 16 51 H 0.11 0.39 7.98 -51.93 -0.41 -0.02 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -35.67 399.55 -7.88 -43.55 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.90 Total: 8.54 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.86 Total: -3.84 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: 0.79 Total: -63.21 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.67 -7.88 -43.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105318827.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.678 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds