Wall clock time and date at job start Wed Apr 1 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.01678 * 2 1 4 4 C 1.54265 * 110.03369 * 238.60292 * 2 1 3 5 5 C 1.54883 * 104.19684 * 217.10597 * 4 2 1 6 6 C 1.54886 * 102.74937 * 37.94410 * 5 4 2 7 7 C 1.54226 * 110.02257 * 121.39850 * 2 1 3 8 8 C 1.53000 * 110.14294 * 0.03538 * 7 2 1 9 9 C 1.50699 * 110.08365 * 238.49945 * 7 2 1 10 10 O 1.21282 * 120.00265 * 6.66608 * 9 7 2 11 11 N 1.34777 * 119.99834 * 186.67145 * 9 7 2 12 12 C 1.47073 * 136.06004 * 184.50955 * 11 9 7 13 13 C 1.53754 * 87.88734 * 152.95669 * 12 11 9 14 14 N 1.46502 * 114.57756 * 272.66296 * 13 12 11 15 15 C 1.35311 * 125.86618 * 8.58788 * 14 13 12 16 16 C 1.35350 * 106.17755 * 179.90739 * 15 14 13 17 17 C 1.50696 * 126.75376 * 180.12458 * 16 15 14 18 18 N 1.46504 * 109.47112 * 95.29228 * 17 16 15 19 19 C 1.36937 * 119.99986 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00314 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99895 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99762 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99888 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47449 * 60.00124 * 23 21 19 25 25 H 1.48507 * 109.46807 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47102 * 299.99806 * 23 21 19 27 27 N 1.33769 * 106.49226 * 0.35083 * 16 15 14 28 28 N 1.28628 * 108.88982 * 359.77395 * 27 16 15 29 29 C 1.47070 * 136.05912 * 4.87023 * 11 9 7 30 30 H 1.08999 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47047 * 299.93833 * 1 2 3 32 32 H 1.09001 * 109.46805 * 59.93887 * 1 2 3 33 33 H 1.09000 * 110.47963 * 98.42605 * 4 2 1 34 34 H 1.09002 * 110.59517 * 335.84294 * 4 2 1 35 35 H 1.09000 * 110.75567 * 279.62506 * 5 4 2 36 36 H 1.09002 * 110.91148 * 156.33059 * 5 4 2 37 37 H 1.09000 * 110.48884 * 80.73675 * 6 5 4 38 38 H 1.08999 * 110.48535 * 203.24105 * 6 5 4 39 39 H 1.09005 * 109.46797 * 178.48011 * 8 7 2 40 40 H 1.09000 * 109.47350 * 298.47938 * 8 7 2 41 41 H 1.08996 * 109.47181 * 58.48346 * 8 7 2 42 42 H 1.08992 * 113.46233 * 267.69162 * 12 11 9 43 43 H 1.08999 * 113.46233 * 38.12635 * 12 11 9 44 44 H 1.08994 * 114.08722 * 139.78165 * 13 12 11 45 45 H 1.08003 * 126.91075 * 0.02562 * 15 14 13 46 46 H 1.09003 * 109.47501 * 215.29204 * 17 16 15 47 47 H 1.09000 * 109.47675 * 335.29650 * 17 16 15 48 48 H 0.97001 * 120.00350 * 0.02562 * 18 17 16 49 49 H 0.97001 * 119.99769 * 180.02562 * 22 21 19 50 50 H 1.09009 * 113.46521 * 321.87163 * 29 11 9 51 51 H 1.08997 * 113.46584 * 92.24958 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3137 -1.5005 -0.7196 6 6 2.8875 -1.9409 0.7028 7 6 2.0581 -0.7549 1.2368 8 6 0.8889 -1.2698 2.0787 9 6 2.9301 0.1537 2.0644 10 8 3.0238 1.3289 1.7797 11 7 3.6060 -0.3396 3.1210 12 6 4.4599 0.2126 4.1835 13 6 4.0290 -0.9704 5.0661 14 7 2.7957 -0.7472 5.8246 15 6 1.9574 0.3056 5.6831 16 6 0.9545 0.1111 6.5709 17 6 -0.2343 1.0086 6.7993 18 7 -1.3703 0.5245 6.0111 19 6 -2.5685 1.1856 6.0594 20 1 -2.6760 2.0642 6.6782 21 6 -3.6451 0.7265 5.3129 22 7 -3.5143 -0.3445 4.5591 23 14 -5.2794 1.6288 5.3782 24 1 -5.0918 3.0270 4.9147 25 1 -6.2593 0.9424 4.4984 26 1 -5.7867 1.6338 6.7739 27 7 1.2288 -1.0320 7.2093 28 7 2.3261 -1.5159 6.7440 29 6 3.8195 -1.6679 3.7150 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5129 0.8906 32 1 -0.3633 0.5148 -0.8895 33 1 2.3297 -0.0528 -2.0254 34 1 1.3152 -1.4653 -1.5993 35 1 4.1710 -0.8288 -0.6754 36 1 3.5356 -2.3673 -1.3421 37 1 2.2772 -2.8428 0.6561 38 1 3.7638 -2.1066 1.3295 39 1 1.2739 -1.8242 2.9347 40 1 0.2946 -0.4262 2.4297 41 1 0.2653 -1.9260 1.4716 42 1 5.5212 0.2050 3.9353 43 1 4.1202 1.1795 4.5547 44 1 4.8339 -1.3932 5.6673 45 1 2.0658 1.1334 4.9979 46 1 -0.4968 1.0018 7.8573 47 1 0.0135 2.0249 6.4931 48 1 -1.2740 -0.2649 5.4556 49 1 -4.2665 -0.6651 4.0373 50 1 2.9341 -2.3033 3.6872 51 1 4.7114 -2.1717 3.3426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105318827.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:24 Heat of formation + Delta-G solvation = 94.181454 kcal Electronic energy + Delta-G solvation = -32491.026701 eV Core-core repulsion = 28428.556686 eV Total energy + Delta-G solvation = -4062.470015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.39981 -42.05067 -40.18732 -38.29218 -36.83555 -34.70615 -33.59201 -32.86959 -32.34603 -31.67557 -30.09034 -27.84350 -27.15968 -26.46621 -26.34809 -25.06077 -24.76260 -22.75143 -22.31457 -21.72825 -20.66288 -19.42441 -19.29439 -18.23320 -17.85921 -17.83487 -17.22809 -16.72358 -16.58765 -16.00062 -15.90534 -15.57138 -15.47890 -15.13813 -14.99961 -14.68811 -14.58722 -14.37956 -14.32192 -13.97233 -13.84390 -13.66935 -13.38586 -13.04099 -12.95629 -12.77216 -12.70185 -12.61310 -12.38290 -12.16385 -12.11850 -11.92662 -11.89741 -11.87485 -11.78866 -11.63130 -11.61436 -11.35460 -11.11540 -10.97146 -10.68782 -10.29077 -9.95221 -9.03998 -7.94241 -5.24773 0.49980 1.24360 1.40256 1.48075 1.48805 1.50964 1.56932 1.60863 2.57373 2.70492 3.16794 3.30402 3.36968 3.41498 3.54409 3.59234 3.81749 3.89822 3.96217 4.11570 4.16410 4.19417 4.21763 4.32054 4.34971 4.35767 4.40742 4.43915 4.50521 4.52399 4.53012 4.58782 4.65277 4.74336 4.79024 4.83231 4.91509 4.95803 5.02359 5.05883 5.08054 5.10008 5.15455 5.26837 5.31278 5.35287 5.48325 5.50071 5.64313 6.24529 6.45579 6.99160 7.31821 7.45453 8.01261 8.28767 9.28950 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.004210 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.061166 B = 6649.902260 C = 9038.332659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.108 4.108 7 C -0.071 4.071 8 C -0.125 4.125 9 C 0.558 3.442 10 O -0.576 6.576 11 N -0.656 5.656 12 C 0.104 3.896 13 C 0.093 3.907 14 N -0.263 5.263 15 C -0.017 4.017 16 C -0.031 4.031 17 C 0.234 3.766 18 N -0.736 5.736 19 C -0.250 4.250 20 H 0.080 0.920 21 C -0.070 4.070 22 N -0.966 5.966 23 Si 0.975 3.025 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.277 1.277 27 N -0.291 5.291 28 N -0.089 5.089 29 C 0.097 3.903 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.078 0.922 42 H 0.161 0.839 43 H 0.076 0.924 44 H 0.191 0.809 45 H 0.188 0.812 46 H 0.033 0.967 47 H 0.049 0.951 48 H 0.371 0.629 49 H 0.251 0.749 50 H 0.078 0.922 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.462 -5.413 -9.791 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.146 4.146 7 C -0.074 4.074 8 C -0.182 4.182 9 C 0.349 3.651 10 O -0.455 6.455 11 N -0.391 5.391 12 C -0.019 4.019 13 C -0.009 4.009 14 N -0.057 5.057 15 C -0.168 4.168 16 C -0.169 4.169 17 C 0.106 3.894 18 N -0.379 5.379 19 C -0.382 4.382 20 H 0.098 0.902 21 C -0.262 4.262 22 N -0.616 5.616 23 Si 0.804 3.196 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.203 1.203 27 N -0.159 5.159 28 N -0.068 5.068 29 C -0.026 4.026 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.097 0.903 42 H 0.178 0.822 43 H 0.095 0.905 44 H 0.207 0.793 45 H 0.205 0.795 46 H 0.051 0.949 47 H 0.067 0.933 48 H 0.202 0.798 49 H 0.060 0.940 50 H 0.096 0.904 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 24.505 -5.873 -9.253 26.844 hybrid contribution -1.668 1.458 -0.612 2.299 sum 22.837 -4.415 -9.865 25.265 Atomic orbital electron populations 1.21935 0.95207 1.02046 1.00865 1.21841 0.95416 0.99788 0.93600 0.91483 1.22433 0.97903 0.99030 0.95908 1.22466 0.96991 1.00454 0.95619 1.22561 0.99297 0.95670 0.97027 1.21435 0.94849 0.96146 0.94959 1.21828 0.96789 1.00488 0.99109 1.20347 0.78579 0.87768 0.78386 1.90664 1.66001 1.19240 1.69610 1.49687 1.49075 1.12365 1.27982 1.23704 0.98994 0.96954 0.82223 1.23433 0.83595 1.00863 0.92995 1.47099 1.18834 1.14550 1.25212 1.23153 0.93113 0.96721 1.03845 1.22122 0.99313 0.96625 0.98819 1.18924 0.82379 0.92974 0.95077 1.42426 1.08249 1.33404 1.53774 1.19622 0.89053 1.07678 1.21806 0.90164 1.25571 1.01705 0.99094 0.99865 1.69838 1.31799 1.26509 1.33469 0.85194 0.79214 0.77812 0.77419 1.20235 1.22057 1.20302 1.75040 1.07701 1.09563 1.23545 1.78133 1.07197 1.17967 1.03489 1.23904 1.05476 0.86423 0.86803 0.91549 0.95252 0.92004 0.91177 0.90370 0.92046 0.88909 0.89324 0.89623 0.92966 0.95235 0.90297 0.82152 0.90530 0.79258 0.79531 0.94880 0.93307 0.79766 0.94040 0.90368 0.81542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 7.89 71.98 0.57 -3.43 16 2 C -0.09 -2.21 3.10 -9.95 -0.03 -2.24 16 3 H 0.07 2.06 6.43 -2.39 -0.02 2.05 16 4 C -0.12 -2.07 6.36 31.67 0.20 -1.87 16 5 C -0.12 -1.67 6.91 31.88 0.22 -1.45 16 6 C -0.11 -1.63 5.59 31.67 0.18 -1.46 16 7 C -0.07 -1.66 0.71 -52.09 -0.04 -1.70 16 8 C -0.12 -3.57 7.14 71.98 0.51 -3.06 16 9 C 0.56 14.47 6.73 87.66 0.59 15.06 16 10 O -0.58 -19.81 16.02 -3.04 -0.05 -19.86 16 11 N -0.66 -11.38 3.25 -857.83 -2.79 -14.17 16 12 C 0.10 1.14 7.80 83.26 0.65 1.79 16 13 C 0.09 1.06 5.36 45.55 0.24 1.31 16 14 N -0.26 -6.54 3.56 -326.16 -1.16 -7.70 16 15 C -0.02 -0.52 10.39 83.49 0.87 0.35 16 16 C -0.03 -1.22 6.62 41.60 0.28 -0.94 16 17 C 0.23 10.47 6.82 85.63 0.58 11.06 16 18 N -0.74 -40.34 5.59 -347.17 -1.94 -42.28 16 19 C -0.25 -14.59 9.99 84.04 0.84 -13.75 16 20 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 22 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 23 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 27 N -0.29 -11.82 12.41 -48.60 -0.60 -12.42 16 28 N -0.09 -2.89 13.17 37.02 0.49 -2.41 16 29 C 0.10 0.97 6.17 83.17 0.51 1.48 16 30 H 0.07 1.71 6.62 -2.39 -0.02 1.69 16 31 H 0.03 1.00 6.88 -2.38 -0.02 0.99 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.27 7.86 -2.39 -0.02 1.25 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.22 7.85 -2.39 -0.02 1.20 16 38 H 0.09 0.94 5.86 -2.39 -0.01 0.93 16 39 H 0.05 1.44 6.05 -2.38 -0.01 1.43 16 40 H 0.03 1.09 6.89 -2.39 -0.02 1.07 16 41 H 0.08 2.12 6.62 -2.39 -0.02 2.10 16 42 H 0.16 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.08 1.17 7.01 -2.39 -0.02 1.15 16 44 H 0.19 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.19 5.60 7.23 -2.91 -0.02 5.58 16 46 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.37 22.03 7.66 -92.71 -0.71 21.32 16 49 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 50 H 0.08 1.15 6.34 -2.38 -0.02 1.14 16 51 H 0.17 0.01 7.98 -2.39 -0.02 0.00 16 Total: -1.00 -83.98 399.55 3.14 -80.84 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.24 Total: 31.62 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 6.64 Total: -2.53 kcal Atomic # 7 Polarization: -133.85 SS G_CDS: -5.73 Total: -139.57 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.05 Total: -19.86 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -83.98 3.14 -80.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105318827.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.020 kcal (2) G-P(sol) polarization free energy of solvation -83.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds