Wall clock time and date at job start Wed Apr 1 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43771 * 2 1 4 4 C 1.54266 * 110.59787 * 122.62197 * 2 1 3 5 5 C 1.53869 * 106.60137 * 142.34152 * 4 2 1 6 6 C 1.54273 * 106.59806 * 0.02562 * 5 4 2 7 7 H 1.08993 * 110.48688 * 95.06512 * 6 5 4 8 8 C 1.52998 * 110.48270 * 217.71321 * 6 5 4 9 9 C 1.50703 * 109.47137 * 289.77151 * 8 6 5 10 10 O 1.21279 * 119.99640 * 0.02562 * 9 8 6 11 11 N 1.34778 * 119.99717 * 180.02562 * 9 8 6 12 12 C 1.46506 * 119.99588 * 179.97438 * 11 9 8 13 13 C 1.50692 * 109.46784 * 179.97438 * 12 11 9 14 14 C 1.35349 * 126.75483 * 94.71808 * 13 12 11 15 15 N 1.35311 * 106.17959 * 179.85125 * 14 13 12 16 16 C 1.46502 * 125.87345 * 180.11571 * 15 14 13 17 17 C 1.53950 * 113.73778 * 11.99863 * 16 15 14 18 18 N 1.47587 * 86.11352 * 222.04843 * 17 16 15 19 19 C 1.36931 * 134.48947 * 204.63866 * 18 17 16 20 20 H 1.08001 * 120.00249 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00131 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00255 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00103 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47016 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47544 * 119.99387 * 23 21 19 26 26 H 1.48501 * 109.47355 * 239.99578 * 23 21 19 27 27 C 1.47579 * 91.01402 * 24.63770 * 18 17 16 28 28 N 1.28725 * 108.26204 * 0.40892 * 15 14 13 29 29 N 1.28636 * 110.17610 * 359.74076 * 28 15 14 30 30 C 1.54885 * 104.19251 * 336.38783 * 6 5 4 31 31 H 1.08994 * 109.47453 * 180.70330 * 1 2 3 32 32 H 1.09000 * 109.47081 * 300.70410 * 1 2 3 33 33 H 1.08999 * 109.46805 * 60.69964 * 1 2 3 34 34 H 1.09003 * 110.03136 * 261.62864 * 4 2 1 35 35 H 1.08998 * 110.03298 * 23.05105 * 4 2 1 36 36 H 1.09002 * 110.03727 * 240.71379 * 5 4 2 37 37 H 1.08998 * 110.03453 * 119.27904 * 5 4 2 38 38 H 1.08994 * 109.47502 * 49.77227 * 8 6 5 39 39 H 1.09009 * 109.46937 * 169.77205 * 8 6 5 40 40 H 0.96991 * 120.00112 * 359.97438 * 11 9 8 41 41 H 1.08994 * 109.47127 * 299.99868 * 12 11 9 42 42 H 1.09003 * 109.46739 * 59.99715 * 12 11 9 43 43 H 1.08001 * 126.91192 * 359.97438 * 14 13 12 44 44 H 1.09001 * 112.94271 * 143.72940 * 16 15 14 45 45 H 1.09000 * 113.76906 * 336.34728 * 17 16 15 46 46 H 1.08997 * 113.76813 * 107.74639 * 17 16 15 47 47 H 0.96993 * 120.00466 * 180.02562 * 22 21 19 48 48 H 1.08993 * 113.77188 * 221.05502 * 27 18 17 49 49 H 1.09011 * 113.76721 * 89.66182 * 27 18 17 50 50 H 1.08999 * 110.76189 * 279.63192 * 30 6 5 51 51 H 1.08999 * 110.91620 * 156.33287 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0727 -0.7785 1.2162 5 6 3.3201 -1.5377 0.7313 6 6 3.4923 -1.1936 -0.7627 7 1 4.1899 -0.3651 -0.8854 8 6 3.9721 -2.4193 -1.5426 9 6 5.3982 -2.7279 -1.1658 10 8 5.9740 -2.0358 -0.3532 11 7 6.0337 -3.7730 -1.7320 12 6 7.4204 -4.0726 -1.3661 13 6 7.8928 -5.2799 -2.1342 14 6 8.5752 -5.2802 -3.3031 15 7 8.7873 -6.5796 -3.6155 16 6 9.4932 -7.0734 -4.8005 17 6 10.2580 -5.9792 -5.5671 18 7 9.7447 -6.6203 -6.7934 19 6 10.1615 -6.6699 -8.0968 20 1 9.5900 -7.2253 -8.8257 21 6 11.3186 -6.0064 -8.4813 22 7 12.0148 -5.3291 -7.5931 23 14 11.8867 -6.0735 -10.2594 24 1 10.9359 -6.8937 -11.0522 25 1 11.9370 -4.6975 -10.8154 26 1 13.2392 -6.6833 -10.3243 27 6 8.6020 -7.1862 -6.0506 28 7 8.2569 -7.3074 -2.6957 29 7 7.7153 -6.5625 -1.7977 30 6 2.0726 -0.7796 -1.2232 31 1 -0.3634 -1.0275 0.0126 32 1 -0.3633 0.5247 0.8836 33 1 -0.3633 0.5029 -0.8962 34 1 2.3437 -0.0853 2.0126 35 1 1.3221 -1.4833 1.5737 36 1 3.1749 -2.6111 0.8533 37 1 4.1965 -1.2129 1.2922 38 1 3.3397 -3.2737 -1.3016 39 1 3.9148 -2.2150 -2.6118 40 1 5.5731 -4.3266 -2.3816 41 1 8.0525 -3.2180 -1.6072 42 1 7.4779 -4.2770 -0.2970 43 1 8.8891 -4.4170 -3.8711 44 1 10.0846 -7.9670 -4.6010 45 1 9.8702 -4.9740 -5.4015 46 1 11.3408 -6.0420 -5.4587 47 1 12.8231 -4.8651 -7.8618 48 1 8.3625 -8.2126 -6.3282 49 1 7.7276 -6.5356 -6.0270 50 1 1.4598 -1.6585 -1.4233 51 1 2.1207 -0.1359 -2.1014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107192569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:50 Heat of formation + Delta-G solvation = 94.230294 kcal Electronic energy + Delta-G solvation = -29465.448914 eV Core-core repulsion = 25402.981017 eV Total energy + Delta-G solvation = -4062.467897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.09588 -40.07691 -38.49545 -38.33933 -35.23754 -33.44073 -32.94669 -32.01045 -31.29980 -29.88880 -28.09206 -27.86707 -26.31662 -25.28768 -24.45213 -24.20410 -21.96693 -21.19479 -20.84831 -20.37892 -19.70664 -19.60794 -17.63538 -17.15509 -16.66475 -16.50541 -16.27405 -15.61873 -15.45504 -15.15310 -14.76973 -14.51648 -14.24645 -14.11131 -13.81636 -13.62718 -13.33337 -13.32016 -13.03247 -12.95424 -12.43174 -12.24621 -12.14583 -12.07749 -11.87695 -11.41353 -11.31670 -11.21135 -11.13609 -11.01687 -11.00812 -10.96077 -10.87422 -10.83138 -10.58740 -10.53206 -10.23764 -9.99930 -9.91503 -9.58870 -9.16446 -9.13270 -9.06587 -7.29216 -6.08024 -3.43534 1.79190 2.41886 2.57468 2.61501 3.23682 3.29652 3.32014 3.35130 4.19201 4.26429 4.28199 4.33919 4.42763 4.67598 4.71631 4.74486 4.84745 4.92627 4.96071 5.11274 5.12390 5.17399 5.19857 5.29149 5.31717 5.33203 5.38143 5.44271 5.46829 5.51759 5.59916 5.61871 5.67987 5.74146 5.78442 5.85674 5.89583 6.02021 6.05254 6.07741 6.13484 6.18683 6.24392 6.26874 6.29932 6.50621 6.76479 6.99880 7.13714 7.40076 7.64734 8.13266 8.70885 8.72632 9.38569 10.15925 11.09249 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.001723 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.173297 B =16244.720918 C =17255.113342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.075 4.075 7 H 0.083 0.917 8 C -0.135 4.135 9 C 0.513 3.487 10 O -0.540 6.540 11 N -0.726 5.726 12 C 0.215 3.785 13 C -0.063 4.063 14 C -0.015 4.015 15 N -0.265 5.265 16 C 0.077 3.923 17 C 0.163 3.837 18 N -0.598 5.598 19 C -0.233 4.233 20 H 0.088 0.912 21 C -0.001 4.001 22 N -0.919 5.919 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.287 1.287 27 C 0.120 3.880 28 N -0.089 5.089 29 N -0.268 5.268 30 C -0.117 4.117 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.402 0.598 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.191 0.809 44 H 0.132 0.868 45 H 0.041 0.959 46 H 0.092 0.908 47 H 0.259 0.741 48 H 0.062 0.938 49 H 0.043 0.957 50 H 0.068 0.932 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.956 7.732 13.024 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.159 4.159 5 C -0.153 4.153 6 C -0.094 4.094 7 H 0.102 0.898 8 C -0.175 4.175 9 C 0.300 3.700 10 O -0.416 6.416 11 N -0.378 5.378 12 C 0.090 3.910 13 C -0.202 4.202 14 C -0.169 4.169 15 N -0.057 5.057 16 C -0.025 4.025 17 C 0.037 3.963 18 N -0.325 5.325 19 C -0.359 4.359 20 H 0.106 0.894 21 C -0.198 4.198 22 N -0.565 5.565 23 Si 0.749 3.251 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.214 1.214 27 C -0.007 4.007 28 N -0.068 5.068 29 N -0.134 5.134 30 C -0.155 4.155 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.236 0.764 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.208 0.792 44 H 0.150 0.850 45 H 0.059 0.941 46 H 0.110 0.890 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.060 0.940 50 H 0.087 0.913 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.536 6.810 13.797 23.329 hybrid contribution 0.488 0.726 -1.850 2.047 sum -17.048 7.536 11.947 22.139 Atomic orbital electron populations 1.21804 0.95133 1.01731 1.01484 1.21949 0.95283 0.99360 0.95082 0.90890 1.22236 0.97400 0.98816 0.97459 1.22160 0.97840 0.99813 0.95477 1.21734 0.96363 0.96631 0.94682 0.89835 1.21776 0.93174 1.00209 1.02326 1.20698 0.88710 0.79803 0.80797 1.90696 1.68132 1.49260 1.33556 1.46112 1.14267 1.31680 1.45769 1.19260 0.81958 0.91568 0.98209 1.21743 1.06981 0.94369 0.97073 1.23510 1.04609 0.89735 0.99046 1.47913 1.34948 1.04845 1.18022 1.25293 0.96141 1.02734 0.78338 1.22707 0.99815 0.91721 0.82094 1.45627 1.23496 1.58007 1.05335 1.19051 1.06273 1.28242 0.82370 0.89422 1.24854 0.97405 0.98984 0.98597 1.69764 1.17715 1.36111 1.32865 0.85944 0.78516 0.77514 0.83141 1.20198 1.21430 1.21355 1.22932 0.91938 0.98810 0.87062 1.78276 1.11662 1.20766 0.96102 1.75022 1.17636 1.01066 1.19706 1.22648 0.95515 0.99847 0.97468 0.92657 0.92845 0.92766 0.92118 0.91975 0.92255 0.91013 0.88845 0.88808 0.76373 0.89727 0.89880 0.79234 0.85041 0.94132 0.89002 0.93121 0.91943 0.93983 0.91294 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.13 37.16 0.34 -0.49 16 2 C -0.10 -0.66 3.45 -88.97 -0.31 -0.96 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.12 -0.89 6.38 -25.62 -0.16 -1.05 16 5 C -0.12 -1.01 5.57 -25.61 -0.14 -1.15 16 6 C -0.08 -0.62 2.45 -88.96 -0.22 -0.84 16 7 H 0.08 0.81 7.90 -51.93 -0.41 0.40 16 8 C -0.13 -1.04 5.10 -27.88 -0.14 -1.18 16 9 C 0.51 5.58 7.64 -10.98 -0.08 5.49 16 10 O -0.54 -7.66 15.01 5.56 0.08 -7.58 16 11 N -0.73 -7.55 5.55 -61.47 -0.34 -7.89 16 12 C 0.22 2.54 6.23 -5.19 -0.03 2.51 16 13 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 14 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 15 N -0.26 -4.25 3.54 -56.30 -0.20 -4.45 16 16 C 0.08 1.31 5.15 -70.14 -0.36 0.94 16 17 C 0.16 3.30 6.88 -2.97 -0.02 3.28 16 18 N -0.60 -13.62 3.70 -178.09 -0.66 -14.28 16 19 C -0.23 -5.93 10.70 -15.06 -0.16 -6.09 16 20 H 0.09 2.16 7.83 -52.49 -0.41 1.75 16 21 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 22 N -0.92 -24.88 11.38 55.49 0.63 -24.25 16 23 Si 0.92 20.53 29.55 -169.99 -5.02 15.50 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.12 2.18 8.74 -2.98 -0.03 2.15 16 28 N -0.09 -1.53 13.17 60.35 0.79 -0.74 16 29 N -0.27 -4.40 12.41 33.29 0.41 -3.98 16 30 C -0.12 -0.78 5.75 -24.75 -0.14 -0.92 16 31 H 0.05 0.31 8.12 -51.93 -0.42 -0.11 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.43 7.83 -51.93 -0.41 0.02 16 36 H 0.06 0.52 7.71 -51.93 -0.40 0.12 16 37 H 0.07 0.76 7.77 -51.93 -0.40 0.35 16 38 H 0.09 0.60 7.95 -51.93 -0.41 0.19 16 39 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 40 H 0.40 3.66 8.46 -40.82 -0.35 3.32 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.19 2.39 6.72 -52.49 -0.35 2.04 16 44 H 0.13 2.17 8.14 -51.93 -0.42 1.74 16 45 H 0.04 0.80 6.31 -51.93 -0.33 0.47 16 46 H 0.09 2.07 7.15 -51.93 -0.37 1.70 16 47 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 50 H 0.07 0.42 7.97 -51.93 -0.41 0.01 16 51 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 411.22 15.07 6.20 6.20 Total: -1.00 -30.04 411.22 -8.85 -38.89 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.46 Total: 2.82 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.29 Total: -0.24 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.64 Total: -55.59 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.08 Total: -7.58 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.04 -8.85 -38.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107192569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.120 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds