Wall clock time and date at job start Wed Apr 1 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43771 * 2 1 4 4 C 1.54266 * 110.59787 * 122.62197 * 2 1 3 5 5 C 1.53869 * 106.60137 * 142.34152 * 4 2 1 6 6 C 1.54273 * 106.59806 * 0.02562 * 5 4 2 7 7 H 1.08993 * 110.48688 * 95.06512 * 6 5 4 8 8 C 1.52998 * 110.48270 * 217.71321 * 6 5 4 9 9 C 1.50703 * 109.47137 * 289.77151 * 8 6 5 10 10 O 1.21279 * 119.99640 * 0.02562 * 9 8 6 11 11 N 1.34778 * 119.99717 * 180.02562 * 9 8 6 12 12 C 1.46506 * 119.99588 * 179.97438 * 11 9 8 13 13 C 1.50692 * 109.46784 * 179.97438 * 12 11 9 14 14 C 1.35349 * 126.75483 * 94.71808 * 13 12 11 15 15 N 1.35311 * 106.17959 * 179.85125 * 14 13 12 16 16 C 1.46502 * 125.87345 * 180.11571 * 15 14 13 17 17 C 1.53950 * 113.73778 * 11.99863 * 16 15 14 18 18 N 1.47587 * 86.11352 * 222.04843 * 17 16 15 19 19 C 1.36931 * 134.48947 * 204.63866 * 18 17 16 20 20 H 1.08001 * 120.00249 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00131 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00255 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00103 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47016 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47544 * 119.99387 * 23 21 19 26 26 H 1.48501 * 109.47355 * 239.99578 * 23 21 19 27 27 C 1.47579 * 91.01402 * 24.63770 * 18 17 16 28 28 N 1.28725 * 108.26204 * 0.40892 * 15 14 13 29 29 N 1.28636 * 110.17610 * 359.74076 * 28 15 14 30 30 C 1.54885 * 104.19251 * 336.38783 * 6 5 4 31 31 H 1.08994 * 109.47453 * 180.70330 * 1 2 3 32 32 H 1.09000 * 109.47081 * 300.70410 * 1 2 3 33 33 H 1.08999 * 109.46805 * 60.69964 * 1 2 3 34 34 H 1.09003 * 110.03136 * 261.62864 * 4 2 1 35 35 H 1.08998 * 110.03298 * 23.05105 * 4 2 1 36 36 H 1.09002 * 110.03727 * 240.71379 * 5 4 2 37 37 H 1.08998 * 110.03453 * 119.27904 * 5 4 2 38 38 H 1.08994 * 109.47502 * 49.77227 * 8 6 5 39 39 H 1.09009 * 109.46937 * 169.77205 * 8 6 5 40 40 H 0.96991 * 120.00112 * 359.97438 * 11 9 8 41 41 H 1.08994 * 109.47127 * 299.99868 * 12 11 9 42 42 H 1.09003 * 109.46739 * 59.99715 * 12 11 9 43 43 H 1.08001 * 126.91192 * 359.97438 * 14 13 12 44 44 H 1.09001 * 112.94271 * 143.72940 * 16 15 14 45 45 H 1.09000 * 113.76906 * 336.34728 * 17 16 15 46 46 H 1.08997 * 113.76813 * 107.74639 * 17 16 15 47 47 H 0.96993 * 120.00466 * 180.02562 * 22 21 19 48 48 H 1.08993 * 113.77188 * 221.05502 * 27 18 17 49 49 H 1.09011 * 113.76721 * 89.66182 * 27 18 17 50 50 H 1.08999 * 110.76189 * 279.63192 * 30 6 5 51 51 H 1.08999 * 110.91620 * 156.33287 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0727 -0.7785 1.2162 5 6 3.3201 -1.5377 0.7313 6 6 3.4923 -1.1936 -0.7627 7 1 4.1899 -0.3651 -0.8854 8 6 3.9721 -2.4193 -1.5426 9 6 5.3982 -2.7279 -1.1658 10 8 5.9740 -2.0358 -0.3532 11 7 6.0337 -3.7730 -1.7320 12 6 7.4204 -4.0726 -1.3661 13 6 7.8928 -5.2799 -2.1342 14 6 8.5752 -5.2802 -3.3031 15 7 8.7873 -6.5796 -3.6155 16 6 9.4932 -7.0734 -4.8005 17 6 10.2580 -5.9792 -5.5671 18 7 9.7447 -6.6203 -6.7934 19 6 10.1615 -6.6699 -8.0968 20 1 9.5900 -7.2253 -8.8257 21 6 11.3186 -6.0064 -8.4813 22 7 12.0148 -5.3291 -7.5931 23 14 11.8867 -6.0735 -10.2594 24 1 10.9359 -6.8937 -11.0522 25 1 11.9370 -4.6975 -10.8154 26 1 13.2392 -6.6833 -10.3243 27 6 8.6020 -7.1862 -6.0506 28 7 8.2569 -7.3074 -2.6957 29 7 7.7153 -6.5625 -1.7977 30 6 2.0726 -0.7796 -1.2232 31 1 -0.3634 -1.0275 0.0126 32 1 -0.3633 0.5247 0.8836 33 1 -0.3633 0.5029 -0.8962 34 1 2.3437 -0.0853 2.0126 35 1 1.3221 -1.4833 1.5737 36 1 3.1749 -2.6111 0.8533 37 1 4.1965 -1.2129 1.2922 38 1 3.3397 -3.2737 -1.3016 39 1 3.9148 -2.2150 -2.6118 40 1 5.5731 -4.3266 -2.3816 41 1 8.0525 -3.2180 -1.6072 42 1 7.4779 -4.2770 -0.2970 43 1 8.8891 -4.4170 -3.8711 44 1 10.0846 -7.9670 -4.6010 45 1 9.8702 -4.9740 -5.4015 46 1 11.3408 -6.0420 -5.4587 47 1 12.8231 -4.8651 -7.8618 48 1 8.3625 -8.2126 -6.3282 49 1 7.7276 -6.5356 -6.0270 50 1 1.4598 -1.6585 -1.4233 51 1 2.1207 -0.1359 -2.1014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107192569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:49 Heat of formation + Delta-G solvation = 76.516641 kcal Electronic energy + Delta-G solvation = -29466.217035 eV Core-core repulsion = 25402.981017 eV Total energy + Delta-G solvation = -4063.236018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.35307 -40.90818 -39.96438 -39.08352 -36.25928 -34.95271 -33.72741 -33.51999 -32.40936 -30.52779 -29.71506 -28.73007 -27.23893 -26.74103 -26.00638 -24.87278 -23.42349 -22.38359 -21.70128 -21.13958 -20.94138 -20.34315 -19.04692 -18.50014 -17.80389 -17.52215 -17.08871 -16.98450 -16.65620 -16.32000 -15.97160 -15.71703 -15.16505 -15.07958 -14.80479 -14.63260 -14.42297 -14.21705 -13.98001 -13.80445 -13.67001 -13.57858 -13.40058 -13.02382 -12.92752 -12.80326 -12.70199 -12.63073 -12.42181 -12.06424 -11.92562 -11.78616 -11.72914 -11.71052 -11.56590 -11.46043 -11.40417 -11.24995 -11.06665 -10.93178 -10.82916 -10.25400 -10.08212 -9.10958 -8.01322 -5.36570 0.56780 1.24908 1.29391 1.47904 1.49753 1.58326 1.72486 2.42023 2.45420 3.07864 3.11579 3.31175 3.33903 3.64913 3.69737 3.74084 3.83203 3.91656 3.99563 4.07154 4.16003 4.28929 4.39439 4.49049 4.50837 4.56674 4.59015 4.66036 4.70335 4.74157 4.78486 4.79906 4.89028 4.92147 4.93689 5.00805 5.05456 5.05597 5.10147 5.18430 5.20105 5.26188 5.37004 5.39608 5.40151 5.45699 5.58061 5.63858 5.66036 5.77531 6.57389 6.80617 7.29084 7.45660 7.48728 8.33605 9.15628 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.001723 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.173297 B =16244.720918 C =17255.113342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.068 0.932 4 C -0.120 4.120 5 C -0.115 4.115 6 C -0.076 4.076 7 H 0.063 0.937 8 C -0.128 4.128 9 C 0.511 3.489 10 O -0.577 6.577 11 N -0.719 5.719 12 C 0.219 3.781 13 C -0.049 4.049 14 C -0.014 4.014 15 N -0.268 5.268 16 C 0.104 3.896 17 C 0.165 3.835 18 N -0.627 5.627 19 C -0.237 4.237 20 H 0.092 0.908 21 C -0.055 4.055 22 N -0.949 5.949 23 Si 0.979 3.021 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.126 3.874 28 N -0.108 5.108 29 N -0.282 5.282 30 C -0.110 4.110 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.411 0.589 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.207 0.793 44 H 0.138 0.862 45 H 0.047 0.953 46 H 0.064 0.936 47 H 0.253 0.747 48 H 0.076 0.924 49 H 0.054 0.946 50 H 0.080 0.920 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.993 7.572 12.428 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.086 0.914 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.095 4.095 7 H 0.082 0.918 8 C -0.168 4.168 9 C 0.300 3.700 10 O -0.457 6.457 11 N -0.372 5.372 12 C 0.094 3.906 13 C -0.188 4.188 14 C -0.167 4.167 15 N -0.061 5.061 16 C 0.002 3.998 17 C 0.039 3.961 18 N -0.354 5.354 19 C -0.365 4.365 20 H 0.109 0.891 21 C -0.249 4.249 22 N -0.596 5.596 23 Si 0.807 3.193 24 H -0.189 1.189 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.001 4.001 28 N -0.087 5.087 29 N -0.148 5.148 30 C -0.148 4.148 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.247 0.753 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.224 0.776 44 H 0.156 0.844 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.094 0.906 49 H 0.072 0.928 50 H 0.099 0.901 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.622 6.615 13.209 24.562 hybrid contribution 1.074 0.793 -1.552 2.047 sum -18.549 7.408 11.657 23.126 Atomic orbital electron populations 1.21779 0.94131 1.02079 1.01884 1.21960 0.96086 0.98997 0.94737 0.91364 1.22227 0.96900 0.98854 0.97771 1.22130 0.97450 0.99860 0.95859 1.21700 0.97060 0.96285 0.94405 0.91815 1.21815 0.90965 1.00581 1.03427 1.21279 0.89732 0.79078 0.79939 1.90690 1.69203 1.50517 1.35273 1.46043 1.13678 1.31712 1.45777 1.19209 0.83009 0.90920 0.97492 1.21939 1.06047 0.94065 0.96725 1.23831 1.04117 0.89522 0.99254 1.47716 1.35208 1.05418 1.17736 1.24703 0.95230 1.01385 0.78486 1.22579 0.98540 0.92883 0.82147 1.45858 1.25454 1.58873 1.05227 1.19380 1.06040 1.27257 0.83841 0.89077 1.25588 0.97932 0.99476 1.01946 1.69915 1.18030 1.37401 1.34275 0.85008 0.77812 0.77078 0.79381 1.18860 1.21977 1.21903 1.23020 0.91181 0.99391 0.86464 1.78283 1.12614 1.21227 0.96566 1.75010 1.17935 1.02117 1.19747 1.22620 0.94262 1.00359 0.97544 0.92300 0.92667 0.92210 0.92475 0.91250 0.92283 0.93596 0.86926 0.86661 0.75349 0.88945 0.90598 0.77626 0.84447 0.93529 0.91803 0.93797 0.90567 0.92844 0.90146 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.13 71.98 0.66 -0.69 16 2 C -0.10 -1.19 3.45 -9.73 -0.03 -1.22 16 3 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.12 -1.67 6.38 31.32 0.20 -1.47 16 5 C -0.12 -1.99 5.57 31.32 0.17 -1.82 16 6 C -0.08 -1.16 2.45 -9.72 -0.02 -1.19 16 7 H 0.06 1.24 7.90 -2.39 -0.02 1.22 16 8 C -0.13 -1.71 5.10 29.85 0.15 -1.56 16 9 C 0.51 10.52 7.64 87.66 0.67 11.19 16 10 O -0.58 -16.40 15.01 -3.03 -0.05 -16.44 16 11 N -0.72 -13.77 5.55 -466.79 -2.59 -16.36 16 12 C 0.22 4.89 6.23 85.63 0.53 5.43 16 13 C -0.05 -1.27 6.61 41.59 0.28 -0.99 16 14 C -0.01 -0.37 10.72 83.49 0.89 0.52 16 15 N -0.27 -8.19 3.54 -332.03 -1.18 -9.37 16 16 C 0.10 3.41 5.15 46.75 0.24 3.65 16 17 C 0.17 6.61 6.88 86.48 0.59 7.21 16 18 N -0.63 -28.06 3.70 -717.34 -2.65 -30.71 16 19 C -0.24 -11.96 10.70 84.03 0.90 -11.06 16 20 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 21 C -0.06 -2.87 5.50 84.86 0.47 -2.40 16 22 N -0.95 -51.99 11.38 21.65 0.25 -51.74 16 23 Si 0.98 42.13 29.55 68.60 2.03 44.16 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 27 C 0.13 4.34 8.74 86.48 0.76 5.09 16 28 N -0.11 -3.57 13.17 37.02 0.49 -3.08 16 29 N -0.28 -8.85 12.41 -48.60 -0.60 -9.46 16 30 C -0.11 -1.24 5.75 31.88 0.18 -1.06 16 31 H 0.06 0.52 8.12 -2.39 -0.02 0.50 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.86 7.83 -2.39 -0.02 0.84 16 36 H 0.06 1.00 7.71 -2.39 -0.02 0.98 16 37 H 0.05 1.02 7.77 -2.39 -0.02 1.00 16 38 H 0.11 1.12 7.95 -2.39 -0.02 1.10 16 39 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.41 6.53 8.46 -92.72 -0.78 5.74 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.21 4.78 6.72 -2.91 -0.02 4.76 16 44 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 45 H 0.05 1.80 6.31 -2.39 -0.02 1.79 16 46 H 0.06 2.93 7.15 -2.39 -0.02 2.91 16 47 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 48 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 50 H 0.08 0.75 7.97 -2.39 -0.02 0.73 16 51 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -64.39 411.22 2.48 -61.91 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.15 Total: 21.46 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.64 Total: 9.63 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -6.29 Total: -120.71 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.05 Total: -16.44 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -64.39 2.48 -61.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107192569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.423 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds