Wall clock time and date at job start Wed Apr 1 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.53990 * 2 1 4 4 C 1.54887 * 110.48273 * 122.60588 * 2 1 3 5 5 C 1.54892 * 102.74910 * 156.61952 * 4 2 1 6 6 C 1.54262 * 104.19632 * 322.06348 * 5 4 2 7 7 H 1.09004 * 110.02839 * 264.27273 * 6 5 4 8 8 C 1.53002 * 110.03807 * 142.89081 * 6 5 4 9 9 C 1.50699 * 109.47037 * 66.45000 * 8 6 5 10 10 O 1.21284 * 120.00146 * 0.02562 * 9 8 6 11 11 N 1.34772 * 120.00463 * 180.02562 * 9 8 6 12 12 C 1.46496 * 120.00655 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47426 * 179.97438 * 12 11 9 14 14 C 1.35347 * 126.74859 * 94.99681 * 13 12 11 15 15 N 1.35317 * 106.17533 * 180.02562 * 14 13 12 16 16 C 1.46496 * 125.86739 * 179.73551 * 15 14 13 17 17 C 1.53943 * 113.74581 * 13.74885 * 16 15 14 18 18 N 1.47815 * 86.03598 * 222.08451 * 17 16 15 19 19 C 1.36939 * 134.45545 * 204.64630 * 18 17 16 20 20 H 1.07993 * 120.00196 * 173.34609 * 19 18 17 21 21 C 1.38820 * 119.99661 * 353.34065 * 19 18 17 22 22 N 1.31615 * 120.00021 * 5.06484 * 21 19 18 23 23 Si 1.86803 * 119.99763 * 185.06607 * 21 19 18 24 24 H 1.48497 * 109.47203 * 94.98457 * 23 21 19 25 25 H 1.48496 * 109.47134 * 214.98864 * 23 21 19 26 26 H 1.48503 * 109.46903 * 334.98900 * 23 21 19 27 27 C 1.47579 * 91.05090 * 24.54634 * 18 17 16 28 28 N 1.28717 * 108.25821 * 0.02562 * 15 14 13 29 29 N 1.28625 * 110.18162 * 359.97438 * 28 15 14 30 30 C 1.53876 * 106.60000 * 23.60492 * 6 5 4 31 31 H 1.09002 * 109.47537 * 298.85046 * 1 2 3 32 32 H 1.09007 * 109.46610 * 58.84416 * 1 2 3 33 33 H 1.08998 * 109.47060 * 178.84164 * 1 2 3 34 34 H 1.09003 * 110.75520 * 38.30934 * 4 2 1 35 35 H 1.09001 * 110.75905 * 274.93839 * 4 2 1 36 36 H 1.08998 * 110.49294 * 203.37924 * 5 4 2 37 37 H 1.09007 * 110.59414 * 80.79307 * 5 4 2 38 38 H 1.09000 * 109.46554 * 306.45554 * 8 6 5 39 39 H 1.08994 * 109.47510 * 186.44964 * 8 6 5 40 40 H 0.97007 * 119.99816 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.46949 * 59.99488 * 12 11 9 42 42 H 1.09004 * 109.46790 * 300.00129 * 12 11 9 43 43 H 1.08001 * 126.91461 * 0.04525 * 14 13 12 44 44 H 1.09002 * 112.94114 * 145.33787 * 16 15 14 45 45 H 1.09005 * 113.76283 * 336.34114 * 17 16 15 46 46 H 1.08999 * 113.77521 * 107.74057 * 17 16 15 47 47 H 0.97006 * 119.99555 * 179.97438 * 22 21 19 48 48 H 1.09008 * 113.76690 * 221.15360 * 27 18 17 49 49 H 1.08998 * 113.76847 * 89.76247 * 27 18 17 50 50 H 1.08995 * 110.03388 * 119.29008 * 30 6 5 51 51 H 1.08998 * 110.03312 * 240.71942 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0720 -0.7819 1.2223 5 6 3.4906 -1.1980 0.7602 6 6 3.3166 -1.5405 -0.7338 7 1 3.1701 -2.6138 -0.8561 8 6 4.5466 -1.0866 -1.5225 9 6 5.7421 -1.9020 -1.1018 10 8 5.6220 -2.7619 -0.2549 11 7 6.9446 -1.6758 -1.6666 12 6 8.1067 -2.4688 -1.2581 13 6 9.3182 -2.0217 -2.0348 14 6 10.2468 -1.1202 -1.6386 15 7 11.1433 -1.0338 -2.6485 16 6 12.3289 -0.1736 -2.6726 17 6 12.6931 0.4185 -1.2990 18 7 12.9502 1.6799 -2.0255 19 6 13.7267 2.7824 -1.7877 20 1 13.8250 3.5470 -2.5440 21 6 14.3875 2.9173 -0.5743 22 7 14.3492 1.9414 0.3079 23 14 15.3311 4.4840 -0.1939 24 1 14.4639 5.4088 0.5793 25 1 16.5383 4.1531 0.6051 26 1 15.7412 5.1355 -1.4637 27 6 12.0364 1.2729 -3.1105 28 7 10.7719 -1.8328 -3.5869 29 7 9.6870 -2.4370 -3.2517 30 6 2.0700 -0.7789 -1.2171 31 1 -0.3634 0.4959 0.9001 32 1 -0.3633 0.5317 -0.8795 33 1 -0.3633 -1.0274 -0.0208 34 1 1.4579 -1.6599 1.4224 35 1 2.1250 -0.1380 2.1002 36 1 3.8315 -2.0721 1.3149 37 1 4.1915 -0.3722 0.8831 38 1 4.7374 -0.0322 -1.3226 39 1 4.3673 -1.2279 -2.5883 40 1 7.0406 -0.9883 -2.3442 41 1 7.9157 -3.5231 -1.4585 42 1 8.2858 -2.3283 -0.1921 43 1 10.2681 -0.5789 -0.7043 44 1 13.1726 -0.6275 -3.1925 45 1 11.8523 0.4734 -0.6074 46 1 13.5845 -0.0225 -0.8528 47 1 14.8113 2.0356 1.1557 48 1 12.4045 1.5129 -4.1081 49 1 11.0024 1.5794 -2.9522 50 1 2.3412 -0.0859 -2.0135 51 1 1.3176 -1.4823 -1.5739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107192570.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:54 Heat of formation + Delta-G solvation = 94.452286 kcal Electronic energy + Delta-G solvation = -29580.207293 eV Core-core repulsion = 25517.749022 eV Total energy + Delta-G solvation = -4062.458270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.09802 -40.10855 -38.48253 -38.32163 -35.23353 -33.43773 -32.90764 -32.01546 -31.29901 -29.88521 -28.07728 -27.84107 -26.27317 -25.29642 -24.45128 -24.21631 -21.96446 -21.20266 -20.88762 -20.38911 -19.67931 -19.57318 -17.72793 -17.20941 -16.69737 -16.42827 -15.85488 -15.78111 -15.34535 -15.15029 -15.05443 -14.67212 -14.15217 -13.88229 -13.75786 -13.63185 -13.40243 -13.24655 -13.09329 -12.93027 -12.55072 -12.22877 -12.15258 -11.96666 -11.87214 -11.41926 -11.31388 -11.20552 -11.06863 -11.01485 -11.00285 -10.96574 -10.92639 -10.75573 -10.61034 -10.55314 -10.24981 -9.99972 -9.91999 -9.57993 -9.15804 -9.11719 -9.06568 -7.28255 -6.09480 -3.44068 1.79149 2.42048 2.57835 2.61426 3.23759 3.29659 3.31526 3.35756 4.19401 4.27665 4.31498 4.34263 4.44227 4.68090 4.70463 4.76400 4.80586 4.90907 4.94939 5.12643 5.17525 5.19034 5.22398 5.26717 5.34597 5.35808 5.36516 5.41479 5.51061 5.57811 5.59009 5.62587 5.69514 5.73376 5.80964 5.86824 5.89013 6.02091 6.08720 6.11362 6.13604 6.15356 6.26749 6.27454 6.30190 6.51108 6.74022 6.99544 7.13680 7.40340 7.63989 8.13661 8.70780 8.72134 9.38082 10.16264 11.08245 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011839 B = 0.001891 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.477313 B =14801.601565 C =16320.309376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.123 4.123 5 C -0.114 4.114 6 C -0.075 4.075 7 H 0.079 0.921 8 C -0.135 4.135 9 C 0.513 3.487 10 O -0.539 6.539 11 N -0.726 5.726 12 C 0.215 3.785 13 C -0.063 4.063 14 C -0.015 4.015 15 N -0.265 5.265 16 C 0.076 3.924 17 C 0.166 3.834 18 N -0.598 5.598 19 C -0.234 4.234 20 H 0.088 0.912 21 C 0.000 4.000 22 N -0.917 5.917 23 Si 0.918 3.082 24 H -0.286 1.286 25 H -0.288 1.288 26 H -0.277 1.277 27 C 0.120 3.880 28 N -0.089 5.089 29 N -0.268 5.268 30 C -0.118 4.118 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.402 0.598 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.191 0.809 44 H 0.132 0.868 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.259 0.741 48 H 0.062 0.938 49 H 0.043 0.957 50 H 0.064 0.936 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.923 -5.013 -1.681 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.160 4.160 5 C -0.151 4.151 6 C -0.094 4.094 7 H 0.098 0.902 8 C -0.175 4.175 9 C 0.300 3.700 10 O -0.416 6.416 11 N -0.378 5.378 12 C 0.090 3.910 13 C -0.202 4.202 14 C -0.169 4.169 15 N -0.057 5.057 16 C -0.026 4.026 17 C 0.040 3.960 18 N -0.325 5.325 19 C -0.361 4.361 20 H 0.106 0.894 21 C -0.198 4.198 22 N -0.562 5.562 23 Si 0.747 3.253 24 H -0.213 1.213 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.008 4.008 28 N -0.068 5.068 29 N -0.134 5.134 30 C -0.155 4.155 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.236 0.764 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.208 0.792 44 H 0.149 0.851 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.060 0.940 50 H 0.083 0.917 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.379 -5.975 -2.304 22.318 hybrid contribution 0.587 1.764 0.962 2.093 sum -20.792 -4.212 -1.342 21.256 Atomic orbital electron populations 1.21810 0.95209 1.01704 1.01463 1.21980 0.95277 0.99309 0.95173 0.90893 1.22603 0.96605 0.99589 0.97218 1.22383 0.96207 1.01479 0.95047 1.21518 0.92331 1.00573 0.95001 0.90247 1.21871 0.93145 1.00595 1.01926 1.20705 0.83995 0.83955 0.81372 1.90695 1.85022 1.33763 1.32135 1.46113 1.08458 1.39814 1.43441 1.19259 0.79455 0.95623 0.96655 1.21741 1.00619 1.02206 0.95589 1.23509 0.92370 1.03387 0.97616 1.47912 1.19537 1.27381 1.10900 1.25312 0.83742 0.88440 1.05077 1.22690 0.99834 0.84618 0.88902 1.45653 1.47437 1.18363 1.21040 1.19006 1.21162 0.96425 0.99511 0.89448 1.24888 1.00506 0.98453 0.95904 1.69781 1.46389 1.31349 1.08685 0.86019 0.78959 0.82083 0.78222 1.21271 1.21406 1.20269 1.22934 0.95014 0.88007 0.94803 1.78268 1.09576 1.04516 1.14462 1.75013 1.06200 1.20194 1.12025 1.22319 0.96806 0.98782 0.97633 0.92804 0.92854 0.92670 0.91565 0.91835 0.90714 0.92031 0.88815 0.88952 0.76384 0.89886 0.89730 0.79239 0.85061 0.93913 0.89420 0.93063 0.91994 0.93988 0.91695 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.12 37.16 0.34 -0.51 16 2 C -0.10 -0.67 3.46 -88.96 -0.31 -0.98 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.12 -0.92 6.33 -24.74 -0.16 -1.08 16 5 C -0.11 -1.02 5.36 -25.07 -0.13 -1.16 16 6 C -0.08 -0.62 2.56 -89.50 -0.23 -0.85 16 7 H 0.08 0.76 7.97 -51.93 -0.41 0.35 16 8 C -0.14 -1.05 4.83 -27.88 -0.13 -1.19 16 9 C 0.51 5.59 7.60 -10.99 -0.08 5.50 16 10 O -0.54 -7.64 14.75 5.55 0.08 -7.55 16 11 N -0.73 -7.58 5.55 -61.47 -0.34 -7.92 16 12 C 0.22 2.54 6.23 -5.20 -0.03 2.51 16 13 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 14 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 15 N -0.26 -4.25 3.54 -56.31 -0.20 -4.45 16 16 C 0.08 1.29 5.14 -70.15 -0.36 0.93 16 17 C 0.17 3.36 6.81 -2.84 -0.02 3.34 16 18 N -0.60 -13.62 3.70 -177.88 -0.66 -14.28 16 19 C -0.23 -5.97 10.70 -15.06 -0.16 -6.13 16 20 H 0.09 2.15 7.83 -52.49 -0.41 1.74 16 21 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 22 N -0.92 -24.84 11.51 55.49 0.64 -24.20 16 23 Si 0.92 20.52 29.56 -169.99 -5.02 15.49 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 C 0.12 2.18 8.74 -2.97 -0.03 2.15 16 28 N -0.09 -1.53 13.16 60.35 0.79 -0.74 16 29 N -0.27 -4.40 12.41 33.29 0.41 -3.99 16 30 C -0.12 -0.79 6.03 -25.61 -0.15 -0.95 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.32 8.11 -51.93 -0.42 -0.10 16 34 H 0.07 0.49 8.06 -51.93 -0.42 0.08 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.80 7.60 -51.93 -0.39 0.41 16 37 H 0.06 0.57 7.78 -51.93 -0.40 0.16 16 38 H 0.09 0.62 8.04 -51.93 -0.42 0.20 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.40 3.68 8.46 -40.82 -0.35 3.34 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.19 2.41 6.73 -52.49 -0.35 2.06 16 44 H 0.13 2.15 8.14 -51.93 -0.42 1.73 16 45 H 0.04 0.85 6.31 -51.93 -0.33 0.52 16 46 H 0.09 1.97 7.37 -51.93 -0.38 1.59 16 47 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 48 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 51 H 0.07 0.43 7.81 -51.93 -0.41 0.02 16 LS Contribution 410.71 15.07 6.19 6.19 Total: -1.00 -29.97 410.71 -8.85 -38.82 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.46 Total: 2.94 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.29 Total: -0.31 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.65 Total: -55.57 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.08 Total: -7.55 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.97 -8.85 -38.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107192570.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.269 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds