Wall clock time and date at job start Wed Apr 1 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.53990 * 2 1 4 4 C 1.54887 * 110.48273 * 122.60588 * 2 1 3 5 5 C 1.54892 * 102.74910 * 156.61952 * 4 2 1 6 6 C 1.54262 * 104.19632 * 322.06348 * 5 4 2 7 7 H 1.09004 * 110.02839 * 264.27273 * 6 5 4 8 8 C 1.53002 * 110.03807 * 142.89081 * 6 5 4 9 9 C 1.50699 * 109.47037 * 66.45000 * 8 6 5 10 10 O 1.21284 * 120.00146 * 0.02562 * 9 8 6 11 11 N 1.34772 * 120.00463 * 180.02562 * 9 8 6 12 12 C 1.46496 * 120.00655 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47426 * 179.97438 * 12 11 9 14 14 C 1.35347 * 126.74859 * 94.99681 * 13 12 11 15 15 N 1.35317 * 106.17533 * 180.02562 * 14 13 12 16 16 C 1.46496 * 125.86739 * 179.73551 * 15 14 13 17 17 C 1.53943 * 113.74581 * 13.74885 * 16 15 14 18 18 N 1.47815 * 86.03598 * 222.08451 * 17 16 15 19 19 C 1.36939 * 134.45545 * 204.64630 * 18 17 16 20 20 H 1.07993 * 120.00196 * 173.34609 * 19 18 17 21 21 C 1.38820 * 119.99661 * 353.34065 * 19 18 17 22 22 N 1.31615 * 120.00021 * 5.06484 * 21 19 18 23 23 Si 1.86803 * 119.99763 * 185.06607 * 21 19 18 24 24 H 1.48497 * 109.47203 * 94.98457 * 23 21 19 25 25 H 1.48496 * 109.47134 * 214.98864 * 23 21 19 26 26 H 1.48503 * 109.46903 * 334.98900 * 23 21 19 27 27 C 1.47579 * 91.05090 * 24.54634 * 18 17 16 28 28 N 1.28717 * 108.25821 * 0.02562 * 15 14 13 29 29 N 1.28625 * 110.18162 * 359.97438 * 28 15 14 30 30 C 1.53876 * 106.60000 * 23.60492 * 6 5 4 31 31 H 1.09002 * 109.47537 * 298.85046 * 1 2 3 32 32 H 1.09007 * 109.46610 * 58.84416 * 1 2 3 33 33 H 1.08998 * 109.47060 * 178.84164 * 1 2 3 34 34 H 1.09003 * 110.75520 * 38.30934 * 4 2 1 35 35 H 1.09001 * 110.75905 * 274.93839 * 4 2 1 36 36 H 1.08998 * 110.49294 * 203.37924 * 5 4 2 37 37 H 1.09007 * 110.59414 * 80.79307 * 5 4 2 38 38 H 1.09000 * 109.46554 * 306.45554 * 8 6 5 39 39 H 1.08994 * 109.47510 * 186.44964 * 8 6 5 40 40 H 0.97007 * 119.99816 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.46949 * 59.99488 * 12 11 9 42 42 H 1.09004 * 109.46790 * 300.00129 * 12 11 9 43 43 H 1.08001 * 126.91461 * 0.04525 * 14 13 12 44 44 H 1.09002 * 112.94114 * 145.33787 * 16 15 14 45 45 H 1.09005 * 113.76283 * 336.34114 * 17 16 15 46 46 H 1.08999 * 113.77521 * 107.74057 * 17 16 15 47 47 H 0.97006 * 119.99555 * 179.97438 * 22 21 19 48 48 H 1.09008 * 113.76690 * 221.15360 * 27 18 17 49 49 H 1.08998 * 113.76847 * 89.76247 * 27 18 17 50 50 H 1.08995 * 110.03388 * 119.29008 * 30 6 5 51 51 H 1.08998 * 110.03312 * 240.71942 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0720 -0.7819 1.2223 5 6 3.4906 -1.1980 0.7602 6 6 3.3166 -1.5405 -0.7338 7 1 3.1701 -2.6138 -0.8561 8 6 4.5466 -1.0866 -1.5225 9 6 5.7421 -1.9020 -1.1018 10 8 5.6220 -2.7619 -0.2549 11 7 6.9446 -1.6758 -1.6666 12 6 8.1067 -2.4688 -1.2581 13 6 9.3182 -2.0217 -2.0348 14 6 10.2468 -1.1202 -1.6386 15 7 11.1433 -1.0338 -2.6485 16 6 12.3289 -0.1736 -2.6726 17 6 12.6931 0.4185 -1.2990 18 7 12.9502 1.6799 -2.0255 19 6 13.7267 2.7824 -1.7877 20 1 13.8250 3.5470 -2.5440 21 6 14.3875 2.9173 -0.5743 22 7 14.3492 1.9414 0.3079 23 14 15.3311 4.4840 -0.1939 24 1 14.4639 5.4088 0.5793 25 1 16.5383 4.1531 0.6051 26 1 15.7412 5.1355 -1.4637 27 6 12.0364 1.2729 -3.1105 28 7 10.7719 -1.8328 -3.5869 29 7 9.6870 -2.4370 -3.2517 30 6 2.0700 -0.7789 -1.2171 31 1 -0.3634 0.4959 0.9001 32 1 -0.3633 0.5317 -0.8795 33 1 -0.3633 -1.0274 -0.0208 34 1 1.4579 -1.6599 1.4224 35 1 2.1250 -0.1380 2.1002 36 1 3.8315 -2.0721 1.3149 37 1 4.1915 -0.3722 0.8831 38 1 4.7374 -0.0322 -1.3226 39 1 4.3673 -1.2279 -2.5883 40 1 7.0406 -0.9883 -2.3442 41 1 7.9157 -3.5231 -1.4585 42 1 8.2858 -2.3283 -0.1921 43 1 10.2681 -0.5789 -0.7043 44 1 13.1726 -0.6275 -3.1925 45 1 11.8523 0.4734 -0.6074 46 1 13.5845 -0.0225 -0.8528 47 1 14.8113 2.0356 1.1557 48 1 12.4045 1.5129 -4.1081 49 1 11.0024 1.5794 -2.9522 50 1 2.3412 -0.0859 -2.0135 51 1 1.3176 -1.4823 -1.5739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107192570.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:53 Heat of formation + Delta-G solvation = 76.799498 kcal Electronic energy + Delta-G solvation = -29580.972775 eV Core-core repulsion = 25517.749022 eV Total energy + Delta-G solvation = -4063.223753 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.35694 -40.93785 -39.94872 -39.08202 -36.25636 -34.95345 -33.71976 -33.49787 -32.41071 -30.53712 -29.71315 -28.70938 -27.19996 -26.74582 -25.99979 -24.89875 -23.42351 -22.38637 -21.71670 -21.14881 -21.05547 -20.20304 -19.04494 -18.58733 -17.91415 -17.52778 -16.96420 -16.84403 -16.58354 -16.18494 -15.92567 -15.83562 -15.68334 -14.87167 -14.63647 -14.57039 -14.38891 -14.26319 -14.04319 -13.76531 -13.68579 -13.54893 -13.39968 -13.17472 -12.95805 -12.79386 -12.64313 -12.55208 -12.42391 -12.09602 -11.95054 -11.79240 -11.74957 -11.64385 -11.59413 -11.49925 -11.40970 -11.20245 -11.04529 -10.93355 -10.82802 -10.25252 -10.07895 -9.10069 -8.02902 -5.37218 0.56403 1.24753 1.29274 1.47661 1.50019 1.57384 1.72670 2.41978 2.45626 3.05947 3.11914 3.32010 3.33201 3.66186 3.70910 3.73973 3.83301 3.91649 3.98429 4.07906 4.15761 4.24640 4.37784 4.48758 4.57303 4.59126 4.61396 4.65643 4.69919 4.70456 4.78533 4.83055 4.84188 4.92566 5.00475 5.01735 5.03933 5.05817 5.08328 5.16136 5.22318 5.26558 5.36954 5.38545 5.39401 5.45586 5.61284 5.62625 5.65838 5.76240 6.57373 6.79690 7.29237 7.45540 7.48089 8.33755 9.14525 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011839 B = 0.001891 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.477313 B =14801.601565 C =16320.309376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.076 0.924 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.075 4.075 7 H 0.061 0.939 8 C -0.129 4.129 9 C 0.511 3.489 10 O -0.576 6.576 11 N -0.720 5.720 12 C 0.219 3.781 13 C -0.048 4.048 14 C -0.014 4.014 15 N -0.268 5.268 16 C 0.104 3.896 17 C 0.168 3.832 18 N -0.627 5.627 19 C -0.239 4.239 20 H 0.092 0.908 21 C -0.055 4.055 22 N -0.947 5.947 23 Si 0.978 3.022 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.266 1.266 27 C 0.126 3.874 28 N -0.108 5.108 29 N -0.281 5.281 30 C -0.113 4.113 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.411 0.589 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.206 0.794 44 H 0.139 0.861 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.253 0.747 48 H 0.076 0.924 49 H 0.053 0.947 50 H 0.079 0.921 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.316 -3.898 -2.822 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.159 4.159 5 C -0.152 4.152 6 C -0.094 4.094 7 H 0.080 0.920 8 C -0.169 4.169 9 C 0.299 3.701 10 O -0.456 6.456 11 N -0.372 5.372 12 C 0.094 3.906 13 C -0.187 4.187 14 C -0.168 4.168 15 N -0.061 5.061 16 C 0.002 3.998 17 C 0.042 3.958 18 N -0.355 5.355 19 C -0.367 4.367 20 H 0.109 0.891 21 C -0.249 4.249 22 N -0.594 5.594 23 Si 0.806 3.194 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.191 1.191 27 C -0.001 4.001 28 N -0.087 5.087 29 N -0.148 5.148 30 C -0.150 4.150 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.246 0.754 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.223 0.777 44 H 0.156 0.844 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.062 0.938 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.097 0.903 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.797 -4.859 -3.501 23.570 hybrid contribution 0.946 1.333 1.304 2.091 sum -21.851 -3.526 -2.196 22.242 Atomic orbital electron populations 1.21795 0.94490 1.01824 1.01933 1.21980 0.95873 0.99216 0.94514 0.90569 1.22595 0.95681 0.99733 0.97889 1.22338 0.96972 1.00244 0.95627 1.21487 0.93485 0.99826 0.94567 0.92018 1.21912 0.91167 1.00818 1.02960 1.21279 0.84616 0.83586 0.80577 1.90689 1.85538 1.35505 1.33831 1.46045 1.07996 1.39686 1.43501 1.19206 0.79242 0.95445 0.96727 1.21935 1.00808 1.01302 0.94704 1.23820 0.91817 1.03389 0.97724 1.47716 1.19503 1.27446 1.11410 1.24725 0.84219 0.88353 1.02546 1.22561 0.98831 0.84164 0.90289 1.45886 1.48310 1.18484 1.22776 1.19340 1.20799 0.97100 0.99452 0.89073 1.25622 1.02087 1.01032 0.96158 1.69928 1.47779 1.32865 1.08830 0.85076 0.77327 0.78948 0.78074 1.21416 1.22187 1.19051 1.23021 0.94656 0.88144 0.94235 1.78274 1.10180 1.05209 1.14990 1.75002 1.06203 1.20439 1.13146 1.22290 0.95928 0.98880 0.97919 0.92615 0.92120 0.92755 0.91781 0.91627 0.93241 0.92305 0.86982 0.86785 0.75374 0.90551 0.89001 0.77713 0.84353 0.93492 0.92161 0.93766 0.90545 0.92906 0.90272 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.12 71.98 0.66 -0.77 16 2 C -0.10 -1.14 3.46 -9.72 -0.03 -1.17 16 3 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.75 6.33 31.89 0.20 -1.55 16 5 C -0.11 -2.03 5.36 31.67 0.17 -1.86 16 6 C -0.07 -1.15 2.56 -10.07 -0.03 -1.18 16 7 H 0.06 1.17 7.97 -2.38 -0.02 1.15 16 8 C -0.13 -1.74 4.83 29.85 0.14 -1.59 16 9 C 0.51 10.53 7.60 87.66 0.67 11.20 16 10 O -0.58 -16.30 14.75 -3.04 -0.04 -16.34 16 11 N -0.72 -13.84 5.55 -466.79 -2.59 -16.43 16 12 C 0.22 4.91 6.23 85.63 0.53 5.44 16 13 C -0.05 -1.27 6.61 41.60 0.28 -0.99 16 14 C -0.01 -0.38 10.72 83.49 0.89 0.51 16 15 N -0.27 -8.19 3.54 -332.05 -1.18 -9.37 16 16 C 0.10 3.38 5.14 46.75 0.24 3.62 16 17 C 0.17 6.74 6.81 86.44 0.59 7.33 16 18 N -0.63 -28.09 3.70 -716.70 -2.65 -30.75 16 19 C -0.24 -12.06 10.70 84.03 0.90 -11.16 16 20 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 21 C -0.05 -2.84 5.50 84.86 0.47 -2.37 16 22 N -0.95 -51.95 11.51 21.65 0.25 -51.70 16 23 Si 0.98 42.12 29.56 68.60 2.03 44.14 16 24 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.30 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 27 C 0.13 4.33 8.74 86.49 0.76 5.09 16 28 N -0.11 -3.55 13.16 37.02 0.49 -3.07 16 29 N -0.28 -8.85 12.41 -48.60 -0.60 -9.45 16 30 C -0.11 -1.28 6.03 31.32 0.19 -1.09 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.05 0.55 8.11 -2.39 -0.02 0.53 16 34 H 0.06 0.94 8.06 -2.39 -0.02 0.92 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 1.12 7.60 -2.39 -0.02 1.10 16 37 H 0.06 1.06 7.78 -2.38 -0.02 1.04 16 38 H 0.11 1.15 8.04 -2.39 -0.02 1.13 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.41 6.58 8.46 -92.70 -0.78 5.80 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.09 1.95 8.14 -2.38 -0.02 1.94 16 43 H 0.21 4.83 6.73 -2.91 -0.02 4.81 16 44 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 45 H 0.05 1.84 6.31 -2.38 -0.02 1.82 16 46 H 0.06 2.75 7.37 -2.39 -0.02 2.74 16 47 H 0.25 13.61 8.31 -92.70 -0.77 12.84 16 48 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 49 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.08 0.70 7.67 -2.39 -0.02 0.68 16 51 H 0.07 0.76 7.81 -2.39 -0.02 0.74 16 Total: -1.00 -64.17 410.71 2.47 -61.71 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.15 Total: 21.78 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 6.62 Total: 9.47 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -6.28 Total: -120.75 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.04 Total: -16.34 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -64.17 2.47 -61.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107192570.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.505 kcal (2) G-P(sol) polarization free energy of solvation -64.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds