Wall clock time and date at job start Wed Apr 1 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.01508 * 2 1 4 4 C 1.54271 * 110.03073 * 121.43515 * 2 1 3 5 5 C 1.54891 * 104.19267 * 142.89633 * 4 2 1 6 6 C 1.54884 * 102.74986 * 322.06186 * 5 4 2 7 7 C 1.53866 * 110.03754 * 238.60574 * 2 1 3 8 8 C 1.52997 * 110.03491 * 121.38160 * 7 2 1 9 9 C 1.50703 * 110.03019 * 0.02562 * 7 2 1 10 10 O 1.21281 * 120.00419 * 112.36226 * 9 7 2 11 11 N 1.34781 * 119.99489 * 292.35429 * 9 7 2 12 12 C 1.46504 * 119.99394 * 175.95533 * 11 9 7 13 13 C 1.50709 * 109.46769 * 180.02562 * 12 11 9 14 14 C 1.35342 * 126.74891 * 94.99842 * 13 12 11 15 15 N 1.35321 * 106.17289 * 180.02562 * 14 13 12 16 16 C 1.46499 * 125.86712 * 180.02562 * 15 14 13 17 17 C 1.53501 * 114.20654 * 274.99817 * 16 15 14 18 18 N 1.47066 * 87.98146 * 87.52206 * 17 16 15 19 19 C 1.36942 * 136.05421 * 207.08500 * 18 17 16 20 20 H 1.07996 * 119.99856 * 8.28032 * 19 18 17 21 21 C 1.38815 * 119.99865 * 188.28532 * 19 18 17 22 22 N 1.31619 * 119.99868 * 193.33493 * 21 19 18 23 23 Si 1.86799 * 119.99877 * 13.33680 * 21 19 18 24 24 H 1.48501 * 109.46956 * 270.00024 * 23 21 19 25 25 H 1.48501 * 109.47394 * 29.99970 * 23 21 19 26 26 H 1.48504 * 109.47216 * 150.00162 * 23 21 19 27 27 C 1.47067 * 87.88680 * 27.34214 * 18 17 16 28 28 N 1.28712 * 108.26183 * 0.26537 * 15 14 13 29 29 N 1.28640 * 110.18059 * 359.55569 * 28 15 14 30 30 H 1.08993 * 109.47220 * 185.72207 * 1 2 3 31 31 H 1.08999 * 109.47359 * 305.72987 * 1 2 3 32 32 H 1.09001 * 109.46621 * 65.72902 * 1 2 3 33 33 H 1.08991 * 110.48807 * 261.58137 * 4 2 1 34 34 H 1.09003 * 110.48036 * 24.08720 * 4 2 1 35 35 H 1.08997 * 110.75440 * 80.37830 * 5 4 2 36 36 H 1.08998 * 110.75269 * 203.55942 * 5 4 2 37 37 H 1.09006 * 110.48996 * 279.26124 * 6 5 4 38 38 H 1.08999 * 110.48766 * 156.62419 * 6 5 4 39 39 H 1.09003 * 109.47139 * 299.31170 * 8 7 2 40 40 H 1.09002 * 109.47200 * 59.31162 * 8 7 2 41 41 H 1.09000 * 109.47458 * 179.31206 * 8 7 2 42 42 H 0.96993 * 120.00347 * 355.95655 * 11 9 7 43 43 H 1.08993 * 109.47404 * 60.00063 * 12 11 9 44 44 H 1.09005 * 109.47042 * 299.99582 * 12 11 9 45 45 H 1.07998 * 126.91750 * 0.02562 * 14 13 12 46 46 H 1.09005 * 113.40975 * 141.80307 * 16 15 14 47 47 H 1.08994 * 113.46589 * 332.74071 * 17 16 15 48 48 H 1.08993 * 113.46783 * 202.30176 * 17 16 15 49 49 H 0.97003 * 119.99987 * 354.92093 * 22 21 19 50 50 H 1.08998 * 113.46734 * 87.43642 * 27 18 17 51 51 H 1.08997 * 113.46758 * 217.87238 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7559 1.2367 5 6 3.3137 -1.5010 0.7186 6 6 2.8875 -1.9403 -0.7041 7 6 2.0572 -0.7530 -1.2339 8 6 2.9400 0.1715 -2.0746 9 6 0.9039 -1.2578 -2.0623 10 8 0.6974 -0.7911 -3.1625 11 7 0.1020 -2.2281 -1.5804 12 6 -1.0707 -2.6568 -2.3468 13 6 -1.7927 -3.7444 -1.5936 14 6 -2.8449 -3.5885 -0.7568 15 7 -3.1601 -4.8273 -0.3128 16 6 -4.2412 -5.1556 0.6197 17 6 -3.8593 -5.0171 2.1000 18 7 -4.2541 -3.6029 2.0158 19 6 -3.9124 -2.4438 2.6600 20 1 -3.0828 -2.4348 3.3514 21 6 -4.6323 -1.2806 2.4243 22 7 -4.1587 -0.1205 2.8270 23 14 -6.2734 -1.3618 1.5357 24 1 -6.0518 -1.2256 0.0736 25 1 -6.9254 -2.6658 1.8181 26 1 -7.1477 -0.2585 2.0087 27 6 -5.1820 -3.9824 0.9397 28 7 -2.3437 -5.6670 -0.8467 29 7 -1.5191 -5.0536 -1.6204 30 1 -0.3633 -1.0225 0.1025 31 1 -0.3634 0.6001 0.8342 32 1 -0.3632 0.4224 -0.9369 33 1 2.3295 -0.0544 2.0255 34 1 1.3132 -1.4649 1.5975 35 1 4.1710 -0.8293 0.6750 36 1 3.5344 -2.3664 1.3434 37 1 2.2772 -2.8423 -0.6582 38 1 3.7638 -2.1031 -1.3316 39 1 2.3533 1.0258 -2.4124 40 1 3.7775 0.5217 -1.4712 41 1 3.3181 -0.3742 -2.9390 42 1 0.3013 -2.6424 -0.7264 43 1 -0.7516 -3.0367 -3.3172 44 1 -1.7405 -1.8089 -2.4907 45 1 -3.3345 -2.6619 -0.4959 46 1 -4.7560 -6.0851 0.3760 47 1 -2.7955 -5.1603 2.2890 48 1 -4.4894 -5.6046 2.7676 49 1 -3.3440 -0.0853 3.3525 50 1 -6.1608 -4.2972 1.3016 51 1 -5.2451 -3.2441 0.1404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107205579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:32 Heat of formation + Delta-G solvation = 119.678421 kcal Electronic energy + Delta-G solvation = -32493.383643 eV Core-core repulsion = 28432.019260 eV Total energy + Delta-G solvation = -4061.364383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.07355 -40.75990 -38.94876 -37.61199 -35.15480 -33.31476 -32.23586 -31.40355 -31.35470 -30.95207 -28.41659 -27.22043 -25.93533 -25.61582 -24.19699 -23.99519 -21.87067 -21.75966 -21.17326 -20.63430 -19.75723 -19.11756 -17.83762 -17.01309 -16.58427 -16.35772 -15.98490 -15.61685 -15.11383 -14.93436 -14.64788 -14.43133 -14.08243 -14.06412 -13.94697 -13.51078 -13.48341 -13.22147 -12.84617 -12.60147 -12.48641 -12.28007 -12.19619 -12.05753 -11.73194 -11.59914 -11.52645 -11.29472 -11.12435 -10.93088 -10.79636 -10.72071 -10.66387 -10.58749 -10.55449 -10.49640 -9.97216 -9.70718 -9.58005 -9.43943 -9.06435 -8.94732 -8.83281 -7.52589 -6.52850 -3.50829 1.86529 2.49197 2.57254 2.76243 3.18095 3.24714 3.40355 3.51971 4.15675 4.34709 4.38731 4.42257 4.44757 4.52480 4.54044 4.97325 5.02833 5.08116 5.14534 5.20625 5.23410 5.26265 5.31698 5.33409 5.44338 5.49087 5.55959 5.66572 5.71402 5.74900 5.75463 5.78273 5.80631 5.84060 5.90884 5.96816 5.98953 6.04587 6.09293 6.12032 6.14673 6.20984 6.22278 6.30833 6.32167 6.49305 6.53292 6.70988 6.96084 7.61042 8.00641 8.33560 8.71799 8.75133 9.21948 10.02319 10.95747 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010685 B = 0.003965 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.929084 B = 7059.289627 C = 8163.254442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.080 4.080 3 H 0.080 0.920 4 C -0.123 4.123 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.081 4.081 8 C -0.122 4.122 9 C 0.534 3.466 10 O -0.546 6.546 11 N -0.721 5.721 12 C 0.215 3.785 13 C -0.067 4.067 14 C 0.016 3.984 15 N -0.257 5.257 16 C 0.085 3.915 17 C 0.115 3.885 18 N -0.618 5.618 19 C -0.312 4.312 20 H 0.084 0.916 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 1.053 2.947 24 H -0.291 1.291 25 H -0.280 1.280 26 H -0.291 1.291 27 C 0.099 3.901 28 N -0.093 5.093 29 N -0.261 5.261 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.403 0.597 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.192 0.808 46 H 0.123 0.877 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.264 0.736 50 H 0.077 0.923 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.900 -4.423 -5.192 11.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.099 4.099 3 H 0.099 0.901 4 C -0.160 4.160 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.084 4.084 8 C -0.180 4.180 9 C 0.321 3.679 10 O -0.423 6.423 11 N -0.374 5.374 12 C 0.090 3.910 13 C -0.205 4.205 14 C -0.137 4.137 15 N -0.047 5.047 16 C -0.019 4.019 17 C -0.013 4.013 18 N -0.347 5.347 19 C -0.437 4.437 20 H 0.102 0.898 21 C -0.216 4.216 22 N -0.561 5.561 23 Si 0.884 3.116 24 H -0.219 1.219 25 H -0.207 1.207 26 H -0.218 1.218 27 C -0.028 4.028 28 N -0.072 5.072 29 N -0.129 5.129 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.239 0.761 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.209 0.791 46 H 0.141 0.859 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.094 0.906 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.965 -4.416 -6.547 11.216 hybrid contribution 0.588 -0.096 1.521 1.633 sum 8.553 -4.511 -5.026 10.898 Atomic orbital electron populations 1.22202 0.93755 1.03436 1.02267 1.21810 0.96569 0.99240 0.92271 0.90136 1.22508 0.97237 0.99271 0.97007 1.22485 0.97915 1.00071 0.95514 1.22534 0.99511 0.96542 0.96827 1.21557 0.94033 0.96957 0.95883 1.21665 0.98400 0.99070 0.98827 1.20327 0.82925 0.78459 0.86156 1.90674 1.72761 1.58108 1.20757 1.46217 1.27214 1.39480 1.24492 1.19246 0.85940 0.92601 0.93219 1.21691 1.00239 0.93556 1.05026 1.23519 1.00008 0.91622 0.98554 1.46797 1.22750 1.05366 1.29827 1.23338 0.87135 1.01043 0.90363 1.22743 1.00193 0.88070 0.90280 1.46423 1.45248 1.02210 1.40837 1.20104 1.13629 0.84149 1.25860 0.89815 1.25727 1.03389 0.91039 1.01470 1.70893 1.24382 1.23551 1.37294 0.83925 0.76651 0.75361 0.75679 1.21888 1.20692 1.21760 1.23178 0.94278 0.92640 0.92718 1.78230 1.00949 1.18643 1.09390 1.74989 1.18511 1.04679 1.14674 0.91278 0.91773 0.92636 0.91271 0.91022 0.91322 0.91285 0.91143 0.90826 0.91762 0.92083 0.92254 0.76072 0.89925 0.89829 0.79120 0.85897 0.92575 0.91852 0.92538 0.90576 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 7.86 37.16 0.29 -2.02 16 2 C -0.08 -0.95 3.16 -89.50 -0.28 -1.23 16 3 H 0.08 0.90 7.67 -51.93 -0.40 0.51 16 4 C -0.12 -1.33 6.36 -25.07 -0.16 -1.49 16 5 C -0.12 -1.13 6.91 -24.74 -0.17 -1.30 16 6 C -0.12 -1.19 5.78 -25.08 -0.14 -1.33 16 7 C -0.08 -0.96 0.83 -154.55 -0.13 -1.09 16 8 C -0.12 -1.35 7.48 37.16 0.28 -1.07 16 9 C 0.53 7.76 4.70 -10.98 -0.05 7.71 16 10 O -0.55 -9.59 16.05 5.56 0.09 -9.51 16 11 N -0.72 -10.07 3.53 -61.46 -0.22 -10.29 16 12 C 0.22 3.14 6.24 -5.19 -0.03 3.11 16 13 C -0.07 -1.08 6.61 -82.78 -0.55 -1.63 16 14 C 0.02 0.28 10.38 -17.05 -0.18 0.10 16 15 N -0.26 -4.28 3.56 -54.44 -0.19 -4.47 16 16 C 0.08 1.27 5.37 -67.68 -0.36 0.91 16 17 C 0.11 1.91 8.49 -8.50 -0.07 1.84 16 18 N -0.62 -12.79 3.35 -184.62 -0.62 -13.41 16 19 C -0.31 -7.83 11.05 -15.06 -0.17 -8.00 16 20 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 21 C -0.02 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.92 -26.31 13.70 55.49 0.76 -25.55 16 23 Si 1.05 23.41 25.50 -169.99 -4.33 19.07 16 24 H -0.29 -6.15 7.00 56.52 0.40 -5.76 16 25 H -0.28 -5.60 5.50 56.52 0.31 -5.29 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.10 1.69 4.76 -8.37 -0.04 1.65 16 28 N -0.09 -1.63 13.16 60.35 0.79 -0.84 16 29 N -0.26 -4.57 12.41 33.29 0.41 -4.16 16 30 H 0.07 1.05 5.62 -51.93 -0.29 0.76 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.86 7.27 -51.93 -0.38 0.48 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.86 7.77 -51.93 -0.40 0.46 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.76 6.54 -51.93 -0.34 0.42 16 38 H 0.07 0.68 7.84 -51.93 -0.41 0.28 16 39 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.40 5.48 6.48 -40.82 -0.26 5.21 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.19 3.42 7.22 -52.49 -0.38 3.04 16 46 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.26 7.52 8.73 -40.82 -0.36 7.16 16 50 H 0.08 1.21 6.97 -51.93 -0.36 0.84 16 51 H 0.06 1.12 5.02 -51.93 -0.26 0.85 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -30.09 395.14 -7.44 -37.52 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -8.22 Total: 10.01 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.86 Total: -4.35 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.94 Total: -58.71 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.33 Total: 19.07 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.09 -7.44 -37.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107205579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.202 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds