Wall clock time and date at job start Wed Apr 1 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.01508 * 2 1 4 4 C 1.54271 * 110.03073 * 121.43515 * 2 1 3 5 5 C 1.54891 * 104.19267 * 142.89633 * 4 2 1 6 6 C 1.54884 * 102.74986 * 322.06186 * 5 4 2 7 7 C 1.53866 * 110.03754 * 238.60574 * 2 1 3 8 8 C 1.52997 * 110.03491 * 121.38160 * 7 2 1 9 9 C 1.50703 * 110.03019 * 0.02562 * 7 2 1 10 10 O 1.21281 * 120.00419 * 112.36226 * 9 7 2 11 11 N 1.34781 * 119.99489 * 292.35429 * 9 7 2 12 12 C 1.46504 * 119.99394 * 175.95533 * 11 9 7 13 13 C 1.50709 * 109.46769 * 180.02562 * 12 11 9 14 14 C 1.35342 * 126.74891 * 94.99842 * 13 12 11 15 15 N 1.35321 * 106.17289 * 180.02562 * 14 13 12 16 16 C 1.46499 * 125.86712 * 180.02562 * 15 14 13 17 17 C 1.53501 * 114.20654 * 274.99817 * 16 15 14 18 18 N 1.47066 * 87.98146 * 87.52206 * 17 16 15 19 19 C 1.36942 * 136.05421 * 207.08500 * 18 17 16 20 20 H 1.07996 * 119.99856 * 8.28032 * 19 18 17 21 21 C 1.38815 * 119.99865 * 188.28532 * 19 18 17 22 22 N 1.31619 * 119.99868 * 193.33493 * 21 19 18 23 23 Si 1.86799 * 119.99877 * 13.33680 * 21 19 18 24 24 H 1.48501 * 109.46956 * 270.00024 * 23 21 19 25 25 H 1.48501 * 109.47394 * 29.99970 * 23 21 19 26 26 H 1.48504 * 109.47216 * 150.00162 * 23 21 19 27 27 C 1.47067 * 87.88680 * 27.34214 * 18 17 16 28 28 N 1.28712 * 108.26183 * 0.26537 * 15 14 13 29 29 N 1.28640 * 110.18059 * 359.55569 * 28 15 14 30 30 H 1.08993 * 109.47220 * 185.72207 * 1 2 3 31 31 H 1.08999 * 109.47359 * 305.72987 * 1 2 3 32 32 H 1.09001 * 109.46621 * 65.72902 * 1 2 3 33 33 H 1.08991 * 110.48807 * 261.58137 * 4 2 1 34 34 H 1.09003 * 110.48036 * 24.08720 * 4 2 1 35 35 H 1.08997 * 110.75440 * 80.37830 * 5 4 2 36 36 H 1.08998 * 110.75269 * 203.55942 * 5 4 2 37 37 H 1.09006 * 110.48996 * 279.26124 * 6 5 4 38 38 H 1.08999 * 110.48766 * 156.62419 * 6 5 4 39 39 H 1.09003 * 109.47139 * 299.31170 * 8 7 2 40 40 H 1.09002 * 109.47200 * 59.31162 * 8 7 2 41 41 H 1.09000 * 109.47458 * 179.31206 * 8 7 2 42 42 H 0.96993 * 120.00347 * 355.95655 * 11 9 7 43 43 H 1.08993 * 109.47404 * 60.00063 * 12 11 9 44 44 H 1.09005 * 109.47042 * 299.99582 * 12 11 9 45 45 H 1.07998 * 126.91750 * 0.02562 * 14 13 12 46 46 H 1.09005 * 113.40975 * 141.80307 * 16 15 14 47 47 H 1.08994 * 113.46589 * 332.74071 * 17 16 15 48 48 H 1.08993 * 113.46783 * 202.30176 * 17 16 15 49 49 H 0.97003 * 119.99987 * 354.92093 * 22 21 19 50 50 H 1.08998 * 113.46734 * 87.43642 * 27 18 17 51 51 H 1.08997 * 113.46758 * 217.87238 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7559 1.2367 5 6 3.3137 -1.5010 0.7186 6 6 2.8875 -1.9403 -0.7041 7 6 2.0572 -0.7530 -1.2339 8 6 2.9400 0.1715 -2.0746 9 6 0.9039 -1.2578 -2.0623 10 8 0.6974 -0.7911 -3.1625 11 7 0.1020 -2.2281 -1.5804 12 6 -1.0707 -2.6568 -2.3468 13 6 -1.7927 -3.7444 -1.5936 14 6 -2.8449 -3.5885 -0.7568 15 7 -3.1601 -4.8273 -0.3128 16 6 -4.2412 -5.1556 0.6197 17 6 -3.8593 -5.0171 2.1000 18 7 -4.2541 -3.6029 2.0158 19 6 -3.9124 -2.4438 2.6600 20 1 -3.0828 -2.4348 3.3514 21 6 -4.6323 -1.2806 2.4243 22 7 -4.1587 -0.1205 2.8270 23 14 -6.2734 -1.3618 1.5357 24 1 -6.0518 -1.2256 0.0736 25 1 -6.9254 -2.6658 1.8181 26 1 -7.1477 -0.2585 2.0087 27 6 -5.1820 -3.9824 0.9397 28 7 -2.3437 -5.6670 -0.8467 29 7 -1.5191 -5.0536 -1.6204 30 1 -0.3633 -1.0225 0.1025 31 1 -0.3634 0.6001 0.8342 32 1 -0.3632 0.4224 -0.9369 33 1 2.3295 -0.0544 2.0255 34 1 1.3132 -1.4649 1.5975 35 1 4.1710 -0.8293 0.6750 36 1 3.5344 -2.3664 1.3434 37 1 2.2772 -2.8423 -0.6582 38 1 3.7638 -2.1031 -1.3316 39 1 2.3533 1.0258 -2.4124 40 1 3.7775 0.5217 -1.4712 41 1 3.3181 -0.3742 -2.9390 42 1 0.3013 -2.6424 -0.7264 43 1 -0.7516 -3.0367 -3.3172 44 1 -1.7405 -1.8089 -2.4907 45 1 -3.3345 -2.6619 -0.4959 46 1 -4.7560 -6.0851 0.3760 47 1 -2.7955 -5.1603 2.2890 48 1 -4.4894 -5.6046 2.7676 49 1 -3.3440 -0.0853 3.3525 50 1 -6.1608 -4.2972 1.3016 51 1 -5.2451 -3.2441 0.1404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107205579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:31 Heat of formation + Delta-G solvation = 100.458591 kcal Electronic energy + Delta-G solvation = -32494.217077 eV Core-core repulsion = 28432.019260 eV Total energy + Delta-G solvation = -4062.197817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.42105 -41.85478 -40.36742 -38.69376 -36.42195 -34.97383 -33.89489 -32.57704 -32.38861 -32.01293 -30.07405 -28.41497 -27.19731 -26.76506 -25.67130 -25.09533 -23.35551 -22.97235 -22.42964 -21.57342 -21.17880 -20.28432 -19.61585 -18.30648 -17.77249 -17.59470 -17.23446 -16.82723 -16.49450 -16.07470 -15.94541 -15.77621 -15.68264 -15.33762 -15.22476 -15.02625 -14.53461 -14.38819 -14.01866 -13.67170 -13.65267 -13.49875 -13.43760 -13.26584 -13.08409 -12.95913 -12.70116 -12.59232 -12.57676 -12.14869 -12.04192 -11.94593 -11.75065 -11.60970 -11.54362 -11.49609 -11.45758 -11.40294 -11.01388 -10.88856 -10.83489 -10.29186 -10.06410 -9.32274 -8.59026 -5.48389 0.50072 1.17321 1.28253 1.39914 1.51392 1.58629 1.64117 2.34600 2.54580 2.76590 2.99686 3.18947 3.23111 3.47281 3.52052 3.55015 3.71216 3.87649 4.00038 4.03575 4.07665 4.22592 4.26809 4.32589 4.39454 4.42099 4.43472 4.50231 4.52970 4.55644 4.59801 4.61231 4.80095 4.80406 4.83873 4.85223 4.93997 4.97831 4.98146 5.03676 5.11195 5.11759 5.20940 5.24012 5.25719 5.27720 5.36859 5.44278 5.64974 5.94881 6.43081 6.67754 7.15123 7.30447 7.38818 8.18401 8.91320 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010685 B = 0.003965 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.929084 B = 7059.289627 C = 8163.254442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.075 4.075 3 H 0.092 0.908 4 C -0.123 4.123 5 C -0.112 4.112 6 C -0.114 4.114 7 C -0.078 4.078 8 C -0.120 4.120 9 C 0.531 3.469 10 O -0.579 6.579 11 N -0.716 5.716 12 C 0.217 3.783 13 C -0.055 4.055 14 C 0.004 3.996 15 N -0.255 5.255 16 C 0.100 3.900 17 C 0.116 3.884 18 N -0.650 5.650 19 C -0.285 4.285 20 H 0.045 0.955 21 C -0.071 4.071 22 N -0.964 5.964 23 Si 1.086 2.914 24 H -0.278 1.278 25 H -0.237 1.237 26 H -0.311 1.311 27 C 0.094 3.906 28 N -0.095 5.095 29 N -0.275 5.275 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.405 0.595 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.180 0.820 46 H 0.173 0.827 47 H 0.040 0.960 48 H 0.100 0.900 49 H 0.246 0.754 50 H 0.108 0.892 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.908 -6.738 -5.751 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.094 4.094 3 H 0.110 0.890 4 C -0.160 4.160 5 C -0.150 4.150 6 C -0.152 4.152 7 C -0.081 4.081 8 C -0.177 4.177 9 C 0.320 3.680 10 O -0.458 6.458 11 N -0.369 5.369 12 C 0.092 3.908 13 C -0.193 4.193 14 C -0.150 4.150 15 N -0.047 5.047 16 C -0.002 4.002 17 C -0.010 4.010 18 N -0.379 5.379 19 C -0.413 4.413 20 H 0.063 0.937 21 C -0.265 4.265 22 N -0.608 5.608 23 Si 0.912 3.088 24 H -0.204 1.204 25 H -0.161 1.161 26 H -0.240 1.240 27 C -0.031 4.031 28 N -0.074 5.074 29 N -0.142 5.142 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.242 0.758 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.197 0.803 46 H 0.190 0.810 47 H 0.059 0.941 48 H 0.117 0.883 49 H 0.056 0.944 50 H 0.125 0.875 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.980 -6.823 -7.102 12.676 hybrid contribution 0.634 0.534 1.725 1.914 sum 8.614 -6.290 -5.377 11.944 Atomic orbital electron populations 1.22120 0.96158 1.02081 1.00667 1.21800 0.94300 1.00233 0.93090 0.88981 1.22489 0.97724 0.99143 0.96659 1.22466 0.97404 1.00527 0.94571 1.22547 0.99596 0.95279 0.97731 1.21595 0.93282 0.97838 0.95359 1.21672 0.98745 0.98233 0.99049 1.20880 0.83326 0.77870 0.85961 1.90653 1.73738 1.59115 1.22333 1.46194 1.26919 1.39379 1.24385 1.19221 0.86134 0.92216 0.93243 1.21769 0.99724 0.93419 1.04403 1.23419 1.00570 0.91618 0.99364 1.46987 1.22955 1.04957 1.29774 1.23454 0.85958 1.02014 0.88818 1.22968 0.99959 0.85828 0.92245 1.46332 1.46952 1.02816 1.41800 1.19770 1.11582 0.86315 1.23617 0.93742 1.26901 1.06200 0.90647 1.02729 1.71013 1.24595 1.25261 1.39924 0.83588 0.73065 0.76706 0.75485 1.20407 1.16057 1.23950 1.23447 0.95260 0.93206 0.91202 1.78182 1.01066 1.18695 1.09449 1.74978 1.18953 1.05071 1.15206 0.92477 0.93376 0.94125 0.90391 0.92890 0.89353 0.90361 0.91970 0.89214 0.93213 0.89403 0.92418 0.75817 0.89665 0.89990 0.80293 0.81004 0.94130 0.88291 0.94416 0.87459 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 7.86 71.98 0.57 -4.13 16 2 C -0.08 -1.78 3.16 -10.07 -0.03 -1.82 16 3 H 0.09 1.99 7.67 -2.39 -0.02 1.97 16 4 C -0.12 -2.58 6.36 31.67 0.20 -2.38 16 5 C -0.11 -1.82 6.91 31.88 0.22 -1.60 16 6 C -0.11 -2.13 5.78 31.67 0.18 -1.95 16 7 C -0.08 -1.78 0.83 -52.21 -0.04 -1.83 16 8 C -0.12 -2.48 7.48 71.98 0.54 -1.94 16 9 C 0.53 15.64 4.70 87.66 0.41 16.05 16 10 O -0.58 -20.74 16.05 -3.03 -0.05 -20.79 16 11 N -0.72 -20.44 3.53 -466.76 -1.65 -22.09 16 12 C 0.22 6.44 6.24 85.64 0.53 6.97 16 13 C -0.05 -1.75 6.61 41.60 0.28 -1.47 16 14 C 0.00 0.13 10.38 83.49 0.87 0.99 16 15 N -0.26 -7.96 3.56 -326.16 -1.16 -9.12 16 16 C 0.10 2.60 5.37 45.55 0.24 2.84 16 17 C 0.12 3.53 8.49 83.18 0.71 4.23 16 18 N -0.65 -25.82 3.35 -738.00 -2.48 -28.30 16 19 C -0.29 -14.61 11.05 84.03 0.93 -13.69 16 20 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 21 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 22 N -0.96 -57.76 13.70 21.65 0.30 -57.46 16 23 Si 1.09 46.53 25.50 68.60 1.75 48.28 16 24 H -0.28 -11.13 7.00 99.48 0.70 -10.43 16 25 H -0.24 -8.33 5.50 99.48 0.55 -7.78 16 26 H -0.31 -14.33 7.11 99.48 0.71 -13.62 16 27 C 0.09 2.88 4.76 83.27 0.40 3.28 16 28 N -0.10 -3.14 13.16 37.02 0.49 -2.65 16 29 N -0.27 -9.32 12.41 -48.60 -0.60 -9.93 16 30 H 0.06 1.85 5.62 -2.39 -0.01 1.84 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.33 7.27 -2.39 -0.02 1.32 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.31 7.77 -2.39 -0.02 1.29 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.27 6.54 -2.38 -0.02 1.26 16 38 H 0.09 1.43 7.84 -2.39 -0.02 1.41 16 39 H 0.05 1.17 8.04 -2.39 -0.02 1.15 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.41 11.27 6.48 -92.71 -0.60 10.67 16 43 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 45 H 0.18 6.49 7.22 -2.91 -0.02 6.47 16 46 H 0.17 2.94 8.14 -2.38 -0.02 2.93 16 47 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.25 15.02 8.73 -92.71 -0.81 14.21 16 50 H 0.11 2.75 6.97 -2.39 -0.02 2.73 16 51 H 0.06 1.86 5.02 -2.39 -0.01 1.85 16 Total: -1.00 -68.74 395.14 3.19 -65.54 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 0.13 Total: 36.31 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 6.46 Total: 0.20 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -5.10 Total: -129.55 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.05 Total: -20.79 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.75 Total: 48.28 kcal Total: -68.74 3.19 -65.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107205579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.003 kcal (2) G-P(sol) polarization free energy of solvation -68.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds