Wall clock time and date at job start Wed Apr 1 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.05696 * 2 1 4 4 C 1.54268 * 110.03326 * 238.58666 * 2 1 3 5 5 C 1.54893 * 104.19534 * 264.32581 * 4 2 1 6 6 C 1.54898 * 102.74816 * 322.05465 * 5 4 2 7 7 C 1.53880 * 110.03541 * 121.41668 * 2 1 3 8 8 C 1.52991 * 110.03343 * 238.61795 * 7 2 1 9 9 C 1.50695 * 110.03213 * 0.02562 * 7 2 1 10 10 O 1.21287 * 119.99911 * 112.41631 * 9 7 2 11 11 N 1.34776 * 119.99784 * 292.42277 * 9 7 2 12 12 C 1.46508 * 119.99689 * 174.96552 * 11 9 7 13 13 C 1.50697 * 109.46737 * 180.02562 * 12 11 9 14 14 C 1.35349 * 126.75680 * 94.99814 * 13 12 11 15 15 N 1.35308 * 106.17957 * 179.97438 * 14 13 12 16 16 C 1.46495 * 125.87164 * 180.02562 * 15 14 13 17 17 C 1.53503 * 114.20764 * 85.00069 * 16 15 14 18 18 N 1.47070 * 87.98258 * 220.14948 * 17 16 15 19 19 C 1.36942 * 136.05436 * 207.08077 * 18 17 16 20 20 H 1.07996 * 119.99570 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99743 * 179.72843 * 19 18 17 22 22 N 1.31613 * 120.00237 * 0.27154 * 21 19 18 23 23 Si 1.86797 * 119.99651 * 180.27590 * 21 19 18 24 24 H 1.48505 * 109.47105 * 89.99786 * 23 21 19 25 25 H 1.48500 * 109.46972 * 209.99675 * 23 21 19 26 26 H 1.48502 * 109.47390 * 329.99843 * 23 21 19 27 27 C 1.47059 * 87.88581 * 27.33988 * 18 17 16 28 28 N 1.28717 * 108.26278 * 0.26281 * 15 14 13 29 29 N 1.28631 * 110.17771 * 359.55991 * 28 15 14 30 30 H 1.09003 * 109.47016 * 305.16432 * 1 2 3 31 31 H 1.08991 * 109.47474 * 65.16845 * 1 2 3 32 32 H 1.09009 * 109.47173 * 185.16997 * 1 2 3 33 33 H 1.08995 * 110.48363 * 23.00017 * 4 2 1 34 34 H 1.09002 * 110.48836 * 145.51460 * 4 2 1 35 35 H 1.08995 * 110.75911 * 80.36872 * 5 4 2 36 36 H 1.08998 * 110.75326 * 203.56049 * 5 4 2 37 37 H 1.09004 * 110.48539 * 279.26742 * 6 5 4 38 38 H 1.08996 * 110.48412 * 156.62285 * 6 5 4 39 39 H 1.09000 * 109.47258 * 180.68859 * 8 7 2 40 40 H 1.09006 * 109.47522 * 300.68701 * 8 7 2 41 41 H 1.09004 * 109.47572 * 60.68947 * 8 7 2 42 42 H 0.96996 * 120.00280 * 354.96143 * 11 9 7 43 43 H 1.08995 * 109.47485 * 59.99622 * 12 11 9 44 44 H 1.09000 * 109.46838 * 299.99521 * 12 11 9 45 45 H 1.07998 * 126.91098 * 359.95676 * 14 13 12 46 46 H 1.08997 * 113.28451 * 218.06764 * 16 15 14 47 47 H 1.08997 * 113.46563 * 105.36962 * 17 16 15 48 48 H 1.09001 * 113.51848 * 334.93758 * 17 16 15 49 49 H 0.96997 * 120.00055 * 180.02562 * 22 21 19 50 50 H 1.09009 * 113.46878 * 87.44051 * 27 18 17 51 51 H 1.09002 * 113.46904 * 217.87088 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 2.3280 -2.1902 -0.7192 6 6 2.8875 -1.9407 0.7035 7 6 2.0571 -0.7536 1.2337 8 6 2.9399 0.1706 2.0747 9 6 0.9039 -1.2597 2.0612 10 8 0.6980 -2.4517 2.1495 11 7 0.1012 -0.3878 2.7030 12 6 -1.0836 -0.8714 3.4163 13 6 -1.8039 0.2950 4.0422 14 6 -2.8450 0.9811 3.5155 15 7 -3.1641 1.9352 4.4203 16 6 -4.2364 2.9239 4.2833 17 6 -5.6165 2.4217 4.7300 18 7 -6.1897 3.1265 3.5734 19 6 -7.3978 3.6915 3.2627 20 1 -8.2048 3.6690 3.9801 21 6 -7.5831 4.2984 2.0282 22 7 -6.5995 4.3262 1.1542 23 14 -9.2287 5.0759 1.6074 24 1 -9.2256 6.4999 2.0288 25 1 -9.4546 4.9938 0.1419 26 1 -10.3141 4.3521 2.3168 27 6 -4.8966 2.9518 2.8951 28 7 -2.3603 1.8281 5.4200 29 7 -1.5405 0.8556 5.2279 30 1 -0.3633 0.5919 0.8401 31 1 -0.3634 0.4315 -0.9326 32 1 -0.3634 -1.0236 0.0926 33 1 1.3061 -0.7695 -2.0254 34 1 2.9798 -0.2986 -1.5981 35 1 1.4031 -2.7651 -0.6752 36 1 3.0651 -2.6941 -1.3443 37 1 3.9440 -1.6766 0.6570 38 1 2.7402 -2.8198 1.3308 39 1 3.3180 -0.3755 2.9390 40 1 3.7775 0.5211 1.4715 41 1 2.3532 1.0248 2.4129 42 1 0.3079 0.5598 2.6926 43 1 -0.7788 -1.5708 4.1947 44 1 -1.7492 -1.3753 2.7154 45 1 -3.3244 0.8030 2.5643 46 1 -3.9699 3.9056 4.6748 47 1 -5.9370 2.8287 5.6889 48 1 -5.7238 1.3383 4.6750 49 1 -6.7289 4.7507 0.2917 50 1 -4.8134 2.0081 2.3558 51 1 -4.6040 3.8104 2.2907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107205584.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:43 Heat of formation + Delta-G solvation = 112.480485 kcal Electronic energy + Delta-G solvation = -31003.868991 eV Core-core repulsion = 26942.192482 eV Total energy + Delta-G solvation = -4061.676509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.11222 -40.97339 -38.60222 -37.68193 -35.33917 -33.50213 -32.28142 -31.91446 -31.48531 -30.69093 -28.05307 -26.93683 -26.41489 -25.09781 -24.52459 -24.35548 -22.29487 -21.98083 -21.07742 -20.58043 -19.76191 -19.30527 -17.50029 -16.95639 -16.72727 -16.30079 -15.93349 -15.57768 -15.48272 -15.15396 -14.81621 -14.68962 -14.14223 -13.79295 -13.63333 -13.39688 -13.25128 -13.03657 -13.01000 -12.81509 -12.58356 -12.44825 -12.33867 -12.13378 -11.87965 -11.62190 -11.41443 -11.25143 -11.15014 -11.01618 -11.00398 -10.91320 -10.87574 -10.77187 -10.70765 -10.52342 -10.30549 -9.93082 -9.82290 -9.51208 -9.15727 -9.10188 -9.02451 -7.30459 -6.08917 -3.44574 1.78204 2.41236 2.57850 2.59238 3.23709 3.29251 3.30879 3.34493 4.16959 4.19504 4.25645 4.32635 4.39601 4.62956 4.79706 4.82311 4.90346 4.94699 5.00849 5.09420 5.10940 5.16952 5.17275 5.26479 5.32810 5.38263 5.46458 5.49265 5.53446 5.57272 5.65794 5.72231 5.74636 5.74929 5.81149 5.88351 5.95832 5.99952 6.04472 6.08539 6.11941 6.14445 6.17966 6.25489 6.31753 6.48794 6.72385 6.98677 7.10822 7.41216 7.63327 8.13720 8.70107 8.71286 9.37247 10.18820 11.08542 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.002324 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.890233 B =12047.298271 C =13377.282005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.083 4.083 3 H 0.080 0.920 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.106 4.106 7 C -0.082 4.082 8 C -0.140 4.140 9 C 0.534 3.466 10 O -0.541 6.541 11 N -0.723 5.723 12 C 0.214 3.786 13 C -0.061 4.061 14 C -0.016 4.016 15 N -0.262 5.262 16 C 0.071 3.929 17 C 0.117 3.883 18 N -0.595 5.595 19 C -0.228 4.228 20 H 0.089 0.911 21 C -0.001 4.001 22 N -0.918 5.918 23 Si 0.921 3.079 24 H -0.284 1.284 25 H -0.287 1.287 26 H -0.278 1.278 27 C 0.157 3.843 28 N -0.087 5.087 29 N -0.267 5.267 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.402 0.598 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.190 0.810 46 H 0.136 0.864 47 H 0.059 0.941 48 H 0.043 0.957 49 H 0.259 0.741 50 H 0.039 0.961 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.983 -8.115 -2.934 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.102 4.102 3 H 0.099 0.901 4 C -0.158 4.158 5 C -0.161 4.161 6 C -0.144 4.144 7 C -0.085 4.085 8 C -0.198 4.198 9 C 0.321 3.679 10 O -0.418 6.418 11 N -0.376 5.376 12 C 0.089 3.911 13 C -0.200 4.200 14 C -0.170 4.170 15 N -0.054 5.054 16 C -0.031 4.031 17 C -0.011 4.011 18 N -0.321 5.321 19 C -0.354 4.354 20 H 0.107 0.893 21 C -0.199 4.199 22 N -0.563 5.563 23 Si 0.750 3.250 24 H -0.211 1.211 25 H -0.213 1.213 26 H -0.204 1.204 27 C 0.029 3.971 28 N -0.067 5.067 29 N -0.134 5.134 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.238 0.762 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.207 0.793 46 H 0.153 0.847 47 H 0.077 0.923 48 H 0.060 0.940 49 H 0.069 0.931 50 H 0.057 0.943 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.894 -8.176 -1.683 19.745 hybrid contribution -1.321 0.578 -1.317 1.953 sum 16.573 -7.597 -3.000 18.476 Atomic orbital electron populations 1.22214 0.94382 1.02404 1.02694 1.21796 0.96287 0.99170 0.92938 0.90128 1.22450 1.00863 0.95587 0.96861 1.22471 1.01222 0.96633 0.95741 1.22359 0.98024 0.97262 0.96767 1.21539 0.94223 0.97417 0.95370 1.21917 0.99461 0.98619 0.99765 1.20285 0.82901 0.86143 0.78562 1.90680 1.72425 1.15900 1.62806 1.46211 1.26632 1.11042 1.53688 1.19263 0.85472 0.91084 0.95266 1.21730 1.00367 1.02888 0.95062 1.23497 1.00665 0.93569 0.99264 1.47758 1.23107 1.22554 1.11990 1.25031 0.82429 0.90705 1.04931 1.22756 0.87729 0.96570 0.94011 1.45247 1.10462 1.63368 1.12981 1.18935 0.87028 1.29654 0.99785 0.89315 1.24868 0.98539 1.00469 0.95982 1.69767 1.31180 1.47649 1.07709 0.85991 0.82170 0.79223 0.77601 1.21127 1.21337 1.20369 1.22539 0.83789 1.01166 0.89588 1.78282 1.01115 1.15812 1.11453 1.75029 1.18733 1.04473 1.15115 0.91567 0.92125 0.92268 0.91334 0.91523 0.91164 0.91586 0.91124 0.89873 0.91941 0.91309 0.92129 0.76212 0.89833 0.89827 0.79277 0.84657 0.92292 0.93977 0.93098 0.94342 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 7.80 37.15 0.29 -1.17 16 2 C -0.08 -0.67 3.16 -89.50 -0.28 -0.95 16 3 H 0.08 0.57 7.67 -51.93 -0.40 0.18 16 4 C -0.12 -0.90 6.37 -25.07 -0.16 -1.06 16 5 C -0.12 -1.02 6.91 -24.73 -0.17 -1.19 16 6 C -0.11 -0.93 5.67 -25.06 -0.14 -1.07 16 7 C -0.08 -0.72 0.81 -154.54 -0.13 -0.85 16 8 C -0.14 -1.03 7.99 37.15 0.30 -0.73 16 9 C 0.53 6.08 4.61 -10.99 -0.05 6.03 16 10 O -0.54 -7.96 15.44 5.55 0.09 -7.88 16 11 N -0.72 -7.66 3.74 -61.47 -0.23 -7.89 16 12 C 0.21 2.52 6.24 -5.19 -0.03 2.49 16 13 C -0.06 -0.84 6.61 -82.78 -0.55 -1.39 16 14 C -0.02 -0.23 10.72 -17.05 -0.18 -0.41 16 15 N -0.26 -4.17 3.56 -54.44 -0.19 -4.36 16 16 C 0.07 1.21 5.34 -67.68 -0.36 0.85 16 17 C 0.12 2.18 8.49 -8.50 -0.07 2.10 16 18 N -0.59 -13.68 3.78 -184.62 -0.70 -14.38 16 19 C -0.23 -5.82 10.75 -15.06 -0.16 -5.98 16 20 H 0.09 2.19 7.83 -52.49 -0.41 1.78 16 21 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 22 N -0.92 -24.74 11.50 55.49 0.64 -24.11 16 23 Si 0.92 20.50 29.55 -169.99 -5.02 15.47 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 C 0.16 3.14 6.76 -8.38 -0.06 3.09 16 28 N -0.09 -1.50 13.16 60.35 0.79 -0.70 16 29 N -0.27 -4.36 12.41 33.29 0.41 -3.95 16 30 H 0.07 0.61 5.94 -51.93 -0.31 0.30 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.06 0.63 7.14 -51.92 -0.37 0.26 16 33 H 0.07 0.51 7.81 -51.93 -0.41 0.11 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.51 7.85 -51.93 -0.41 0.10 16 38 H 0.08 0.88 6.91 -51.93 -0.36 0.52 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 41 H 0.06 0.42 7.23 -51.93 -0.38 0.05 16 42 H 0.40 3.89 6.74 -40.82 -0.28 3.61 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.19 2.33 6.79 -52.49 -0.36 1.97 16 46 H 0.14 2.23 8.14 -51.93 -0.42 1.81 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 50 H 0.04 0.75 6.41 -51.92 -0.33 0.42 16 51 H 0.09 2.02 7.10 -51.93 -0.37 1.65 16 LS Contribution 401.41 15.07 6.05 6.05 Total: -1.00 -29.80 401.41 -8.17 -37.97 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.15 Total: 4.14 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.86 Total: -0.36 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.72 Total: -55.38 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.80 -8.17 -37.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107205584.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.446 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds