Wall clock time and date at job start Wed Apr 1 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.05696 * 2 1 4 4 C 1.54268 * 110.03326 * 238.58666 * 2 1 3 5 5 C 1.54893 * 104.19534 * 264.32581 * 4 2 1 6 6 C 1.54898 * 102.74816 * 322.05465 * 5 4 2 7 7 C 1.53880 * 110.03541 * 121.41668 * 2 1 3 8 8 C 1.52991 * 110.03343 * 238.61795 * 7 2 1 9 9 C 1.50695 * 110.03213 * 0.02562 * 7 2 1 10 10 O 1.21287 * 119.99911 * 112.41631 * 9 7 2 11 11 N 1.34776 * 119.99784 * 292.42277 * 9 7 2 12 12 C 1.46508 * 119.99689 * 174.96552 * 11 9 7 13 13 C 1.50697 * 109.46737 * 180.02562 * 12 11 9 14 14 C 1.35349 * 126.75680 * 94.99814 * 13 12 11 15 15 N 1.35308 * 106.17957 * 179.97438 * 14 13 12 16 16 C 1.46495 * 125.87164 * 180.02562 * 15 14 13 17 17 C 1.53503 * 114.20764 * 85.00069 * 16 15 14 18 18 N 1.47070 * 87.98258 * 220.14948 * 17 16 15 19 19 C 1.36942 * 136.05436 * 207.08077 * 18 17 16 20 20 H 1.07996 * 119.99570 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99743 * 179.72843 * 19 18 17 22 22 N 1.31613 * 120.00237 * 0.27154 * 21 19 18 23 23 Si 1.86797 * 119.99651 * 180.27590 * 21 19 18 24 24 H 1.48505 * 109.47105 * 89.99786 * 23 21 19 25 25 H 1.48500 * 109.46972 * 209.99675 * 23 21 19 26 26 H 1.48502 * 109.47390 * 329.99843 * 23 21 19 27 27 C 1.47059 * 87.88581 * 27.33988 * 18 17 16 28 28 N 1.28717 * 108.26278 * 0.26281 * 15 14 13 29 29 N 1.28631 * 110.17771 * 359.55991 * 28 15 14 30 30 H 1.09003 * 109.47016 * 305.16432 * 1 2 3 31 31 H 1.08991 * 109.47474 * 65.16845 * 1 2 3 32 32 H 1.09009 * 109.47173 * 185.16997 * 1 2 3 33 33 H 1.08995 * 110.48363 * 23.00017 * 4 2 1 34 34 H 1.09002 * 110.48836 * 145.51460 * 4 2 1 35 35 H 1.08995 * 110.75911 * 80.36872 * 5 4 2 36 36 H 1.08998 * 110.75326 * 203.56049 * 5 4 2 37 37 H 1.09004 * 110.48539 * 279.26742 * 6 5 4 38 38 H 1.08996 * 110.48412 * 156.62285 * 6 5 4 39 39 H 1.09000 * 109.47258 * 180.68859 * 8 7 2 40 40 H 1.09006 * 109.47522 * 300.68701 * 8 7 2 41 41 H 1.09004 * 109.47572 * 60.68947 * 8 7 2 42 42 H 0.96996 * 120.00280 * 354.96143 * 11 9 7 43 43 H 1.08995 * 109.47485 * 59.99622 * 12 11 9 44 44 H 1.09000 * 109.46838 * 299.99521 * 12 11 9 45 45 H 1.07998 * 126.91098 * 359.95676 * 14 13 12 46 46 H 1.08997 * 113.28451 * 218.06764 * 16 15 14 47 47 H 1.08997 * 113.46563 * 105.36962 * 17 16 15 48 48 H 1.09001 * 113.51848 * 334.93758 * 17 16 15 49 49 H 0.96997 * 120.00055 * 180.02562 * 22 21 19 50 50 H 1.09009 * 113.46878 * 87.44051 * 27 18 17 51 51 H 1.09002 * 113.46904 * 217.87088 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 2.3280 -2.1902 -0.7192 6 6 2.8875 -1.9407 0.7035 7 6 2.0571 -0.7536 1.2337 8 6 2.9399 0.1706 2.0747 9 6 0.9039 -1.2597 2.0612 10 8 0.6980 -2.4517 2.1495 11 7 0.1012 -0.3878 2.7030 12 6 -1.0836 -0.8714 3.4163 13 6 -1.8039 0.2950 4.0422 14 6 -2.8450 0.9811 3.5155 15 7 -3.1641 1.9352 4.4203 16 6 -4.2364 2.9239 4.2833 17 6 -5.6165 2.4217 4.7300 18 7 -6.1897 3.1265 3.5734 19 6 -7.3978 3.6915 3.2627 20 1 -8.2048 3.6690 3.9801 21 6 -7.5831 4.2984 2.0282 22 7 -6.5995 4.3262 1.1542 23 14 -9.2287 5.0759 1.6074 24 1 -9.2256 6.4999 2.0288 25 1 -9.4546 4.9938 0.1419 26 1 -10.3141 4.3521 2.3168 27 6 -4.8966 2.9518 2.8951 28 7 -2.3603 1.8281 5.4200 29 7 -1.5405 0.8556 5.2279 30 1 -0.3633 0.5919 0.8401 31 1 -0.3634 0.4315 -0.9326 32 1 -0.3634 -1.0236 0.0926 33 1 1.3061 -0.7695 -2.0254 34 1 2.9798 -0.2986 -1.5981 35 1 1.4031 -2.7651 -0.6752 36 1 3.0651 -2.6941 -1.3443 37 1 3.9440 -1.6766 0.6570 38 1 2.7402 -2.8198 1.3308 39 1 3.3180 -0.3755 2.9390 40 1 3.7775 0.5211 1.4715 41 1 2.3532 1.0248 2.4129 42 1 0.3079 0.5598 2.6926 43 1 -0.7788 -1.5708 4.1947 44 1 -1.7492 -1.3753 2.7154 45 1 -3.3244 0.8030 2.5643 46 1 -3.9699 3.9056 4.6748 47 1 -5.9370 2.8287 5.6889 48 1 -5.7238 1.3383 4.6750 49 1 -6.7289 4.7507 0.2917 50 1 -4.8134 2.0081 2.3558 51 1 -4.6040 3.8104 2.2907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107205584.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:42 Heat of formation + Delta-G solvation = 95.214533 kcal Electronic energy + Delta-G solvation = -31004.617699 eV Core-core repulsion = 26942.192482 eV Total energy + Delta-G solvation = -4062.425217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.37164 -41.79506 -40.15522 -38.50148 -36.38331 -35.00790 -33.76848 -32.95098 -32.27895 -31.58160 -29.76784 -27.94791 -27.13637 -26.63257 -26.10226 -25.06060 -23.48072 -23.15011 -22.24146 -21.27011 -21.21413 -20.18516 -19.01492 -18.37809 -17.64373 -17.42756 -17.01365 -16.94461 -16.47915 -16.27485 -16.00858 -15.72960 -15.62520 -14.78852 -14.66374 -14.52738 -14.28706 -14.07748 -13.96931 -13.76913 -13.58111 -13.47793 -13.39495 -13.26957 -13.14688 -13.02942 -12.78311 -12.66204 -12.38560 -12.31811 -12.10099 -11.85106 -11.80718 -11.66546 -11.63842 -11.54656 -11.41586 -11.35634 -11.04561 -10.89851 -10.78739 -10.25461 -10.01031 -9.13104 -8.02328 -5.38151 0.55640 1.23065 1.27013 1.48542 1.49762 1.57649 1.67908 2.39846 2.42723 3.05365 3.15246 3.28536 3.34363 3.49679 3.57427 3.68885 3.73938 3.89004 3.99280 4.11963 4.13400 4.32499 4.36883 4.41370 4.46912 4.52319 4.55110 4.58022 4.62396 4.67250 4.68443 4.86786 4.90165 4.94334 4.98375 4.99404 5.03371 5.06816 5.09592 5.11920 5.17618 5.23833 5.29687 5.31393 5.34195 5.40910 5.48616 5.51510 5.64728 5.75853 6.52963 6.78631 7.23995 7.44942 7.46567 8.36079 9.14697 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.002324 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.890233 B =12047.298271 C =13377.282005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.081 4.081 3 H 0.098 0.902 4 C -0.117 4.117 5 C -0.124 4.124 6 C -0.107 4.107 7 C -0.080 4.080 8 C -0.138 4.138 9 C 0.533 3.467 10 O -0.579 6.579 11 N -0.715 5.715 12 C 0.219 3.781 13 C -0.048 4.048 14 C -0.013 4.013 15 N -0.266 5.266 16 C 0.102 3.898 17 C 0.120 3.880 18 N -0.626 5.626 19 C -0.236 4.236 20 H 0.091 0.909 21 C -0.054 4.054 22 N -0.945 5.945 23 Si 0.981 3.019 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.270 1.270 27 C 0.160 3.840 28 N -0.107 5.107 29 N -0.281 5.281 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.409 0.591 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.208 0.792 46 H 0.143 0.857 47 H 0.070 0.930 48 H 0.049 0.951 49 H 0.254 0.746 50 H 0.046 0.954 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.948 -7.689 -3.213 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.100 4.100 3 H 0.117 0.883 4 C -0.154 4.154 5 C -0.161 4.161 6 C -0.144 4.144 7 C -0.083 4.083 8 C -0.196 4.196 9 C 0.322 3.678 10 O -0.458 6.458 11 N -0.368 5.368 12 C 0.093 3.907 13 C -0.187 4.187 14 C -0.166 4.166 15 N -0.058 5.058 16 C -0.001 4.001 17 C -0.007 4.007 18 N -0.352 5.352 19 C -0.363 4.363 20 H 0.109 0.891 21 C -0.248 4.248 22 N -0.592 5.592 23 Si 0.809 3.191 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.195 1.195 27 C 0.033 3.967 28 N -0.085 5.085 29 N -0.147 5.147 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.246 0.754 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.224 0.776 46 H 0.161 0.839 47 H 0.088 0.912 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.063 0.937 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.879 -7.748 -1.923 20.497 hybrid contribution -1.567 0.338 -1.186 1.994 sum 17.312 -7.411 -3.110 19.086 Atomic orbital electron populations 1.22191 0.95446 1.01054 1.02852 1.21833 0.95338 1.00076 0.92711 0.88333 1.22456 1.01679 0.94779 0.96481 1.22455 1.00508 0.97234 0.95926 1.22373 0.99248 0.96337 0.96468 1.21581 0.93358 0.97848 0.95475 1.21937 0.99825 0.98207 0.99612 1.20807 0.83236 0.85601 0.78204 1.90665 1.73471 1.17555 1.64141 1.46133 1.26134 1.11346 1.53190 1.19217 0.85962 0.90196 0.95288 1.21895 0.99990 1.02665 0.94133 1.23823 1.00537 0.92771 0.99509 1.47563 1.22988 1.22790 1.12439 1.24433 0.82272 0.91087 1.02300 1.22823 0.88064 0.96534 0.93251 1.45469 1.10613 1.64065 1.15044 1.19251 0.88190 1.29073 0.99794 0.89095 1.25614 1.01488 1.01553 0.96179 1.69913 1.32667 1.48875 1.07774 0.85048 0.78980 0.78317 0.76769 1.21008 1.21966 1.19459 1.22435 0.83232 1.00306 0.90694 1.78291 1.01723 1.16534 1.11971 1.75017 1.18861 1.04652 1.16180 0.91726 0.91689 0.94258 0.91429 0.89659 0.93491 0.90215 0.89021 0.92257 0.92551 0.89261 0.91686 0.75420 0.90592 0.88944 0.77568 0.83945 0.91156 0.93319 0.93704 0.93674 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 7.80 71.98 0.56 -2.16 16 2 C -0.08 -1.14 3.16 -10.07 -0.03 -1.17 16 3 H 0.10 1.08 7.67 -2.39 -0.02 1.07 16 4 C -0.12 -1.50 6.37 31.67 0.20 -1.30 16 5 C -0.12 -1.93 6.91 31.89 0.22 -1.71 16 6 C -0.11 -1.75 5.67 31.67 0.18 -1.57 16 7 C -0.08 -1.29 0.81 -52.20 -0.04 -1.33 16 8 C -0.14 -1.71 7.99 71.98 0.58 -1.14 16 9 C 0.53 11.93 4.61 87.66 0.40 12.33 16 10 O -0.58 -17.34 15.44 -3.05 -0.05 -17.39 16 11 N -0.72 -14.54 3.74 -466.78 -1.75 -16.29 16 12 C 0.22 4.97 6.24 85.63 0.53 5.51 16 13 C -0.05 -1.25 6.61 41.59 0.28 -0.97 16 14 C -0.01 -0.35 10.72 83.49 0.89 0.55 16 15 N -0.27 -8.08 3.56 -326.17 -1.16 -9.24 16 16 C 0.10 3.33 5.34 45.55 0.24 3.57 16 17 C 0.12 4.30 8.49 83.18 0.71 5.01 16 18 N -0.63 -28.45 3.78 -738.00 -2.79 -31.24 16 19 C -0.24 -11.99 10.75 84.03 0.90 -11.09 16 20 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 21 C -0.05 -2.80 5.50 84.86 0.47 -2.33 16 22 N -0.95 -51.41 11.50 21.65 0.25 -51.16 16 23 Si 0.98 42.06 29.55 68.60 2.03 44.08 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 C 0.16 6.37 6.76 83.27 0.56 6.93 16 28 N -0.11 -3.51 13.16 37.02 0.49 -3.02 16 29 N -0.28 -8.82 12.41 -48.60 -0.60 -9.43 16 30 H 0.06 1.10 5.94 -2.39 -0.01 1.09 16 31 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 32 H 0.04 0.83 7.14 -2.38 -0.02 0.81 16 33 H 0.07 0.90 7.81 -2.39 -0.02 0.88 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.10 7.85 -2.38 -0.02 1.08 16 38 H 0.06 1.27 6.91 -2.39 -0.02 1.26 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.77 8.13 -2.38 -0.02 0.75 16 41 H 0.06 0.75 7.23 -2.38 -0.02 0.73 16 42 H 0.41 7.31 6.74 -92.71 -0.63 6.69 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.21 4.70 6.79 -2.91 -0.02 4.68 16 46 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 47 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 49 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 50 H 0.05 1.73 6.41 -2.38 -0.02 1.72 16 51 H 0.06 2.93 7.10 -2.39 -0.02 2.91 16 Total: -1.00 -63.92 401.41 3.39 -60.53 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.32 Total: 24.01 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.65 Total: 9.13 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -5.56 Total: -120.37 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.05 Total: -17.39 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -63.92 3.39 -60.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107205584.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.748 kcal (2) G-P(sol) polarization free energy of solvation -63.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds