Wall clock time and date at job start Wed Apr 1 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.44730 * 2 1 4 4 C 1.53038 * 109.46163 * 240.03502 * 2 1 3 5 5 C 1.53198 * 109.31413 * 178.61213 * 4 2 1 6 6 N 1.46924 * 108.77207 * 54.63490 * 5 4 2 7 7 C 1.34784 * 120.63099 * 126.36844 * 6 5 4 8 8 O 1.21561 * 119.99981 * 179.38808 * 7 6 5 9 9 C 1.47819 * 119.99721 * 359.39184 * 7 6 5 10 10 C 1.39451 * 120.00267 * 203.35632 * 9 7 6 11 11 N 1.32024 * 119.98431 * 179.97438 * 10 9 7 12 12 C 1.32789 * 119.98498 * 0.02562 * 11 10 9 13 13 N 1.38414 * 119.99418 * 179.97438 * 12 11 10 14 14 C 1.46492 * 120.00087 * 184.99942 * 13 12 11 15 15 C 1.46500 * 119.99690 * 5.00125 * 13 12 11 16 16 C 1.39843 * 120.01271 * 359.97438 * 12 11 10 17 17 N 1.31481 * 120.01872 * 359.78634 * 16 12 11 18 18 C 1.46926 * 118.74164 * 306.39384 * 6 5 4 19 19 C 1.53035 * 109.46042 * 119.96675 * 2 1 3 20 20 H 1.08996 * 109.52729 * 61.42061 * 19 2 1 21 21 C 1.53002 * 109.49592 * 301.33743 * 19 2 1 22 22 N 1.46507 * 109.46973 * 175.16090 * 21 19 2 23 23 C 1.36937 * 119.99765 * 180.02562 * 22 21 19 24 24 H 1.08000 * 120.00465 * 359.97438 * 23 22 21 25 25 C 1.38815 * 120.00010 * 180.02562 * 23 22 21 26 26 N 1.31623 * 119.99681 * 359.97438 * 25 23 22 27 27 Si 1.86791 * 120.00038 * 179.72319 * 25 23 22 28 28 H 1.48498 * 109.47172 * 90.00405 * 27 25 23 29 29 H 1.48504 * 109.47317 * 209.99948 * 27 25 23 30 30 H 1.48501 * 109.47444 * 330.00209 * 27 25 23 31 31 H 1.08990 * 109.47272 * 300.03546 * 1 2 3 32 32 H 1.09006 * 109.47017 * 60.03806 * 1 2 3 33 33 H 1.09006 * 109.47106 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.50106 * 58.66262 * 4 2 1 35 35 H 1.09003 * 109.52254 * 298.58155 * 4 2 1 36 36 H 1.08994 * 109.58484 * 294.85102 * 5 4 2 37 37 H 1.08995 * 109.70547 * 174.49050 * 5 4 2 38 38 H 1.08000 * 120.00720 * 359.95717 * 10 9 7 39 39 H 1.09002 * 109.47454 * 90.00047 * 14 13 12 40 40 H 1.09001 * 109.47403 * 210.00150 * 14 13 12 41 41 H 1.09000 * 109.47139 * 330.00223 * 14 13 12 42 42 H 1.09003 * 109.47384 * 359.97438 * 15 13 12 43 43 H 1.08996 * 109.47419 * 119.99915 * 15 13 12 44 44 H 1.08998 * 109.46850 * 239.99975 * 15 13 12 45 45 H 1.08004 * 119.99510 * 180.02562 * 16 12 11 46 46 H 1.09002 * 109.58099 * 293.82256 * 18 6 5 47 47 H 1.09002 * 109.58785 * 173.39931 * 18 6 5 48 48 H 1.09003 * 109.47391 * 55.16621 * 21 19 2 49 49 H 1.09000 * 109.47218 * 295.15938 * 21 19 2 50 50 H 0.96997 * 119.99660 * 0.02562 * 22 21 19 51 51 H 0.97001 * 119.99629 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5714 -0.6885 -1.2643 6 7 4.0678 -1.2487 0.0000 7 6 4.9614 -2.2578 0.0000 8 8 5.3729 -2.7052 1.0527 9 6 5.4411 -2.8202 -1.2801 10 6 5.9500 -4.1178 -1.3245 11 7 6.3778 -4.6199 -2.4680 12 6 6.3238 -3.8890 -3.5754 13 7 6.7728 -4.4151 -4.7743 14 6 6.8157 -3.5740 -5.9729 15 6 7.2050 -5.8132 -4.8446 16 6 5.8134 -2.5879 -3.5304 17 7 5.3829 -2.0891 -2.3926 18 6 3.5713 -0.6886 1.2643 19 6 2.0398 -0.7207 1.2500 20 1 1.6978 -1.7556 1.2389 21 6 1.5027 -0.0188 2.4989 22 7 1.8949 -0.7751 3.6909 23 6 1.5239 -0.3353 4.9335 24 1 0.9425 0.5692 5.0350 25 6 1.8960 -1.0515 6.0629 26 7 2.6049 -2.1536 5.9393 27 14 1.3965 -0.4474 7.7584 28 1 0.0817 -1.0325 8.1249 29 1 2.4178 -0.8636 8.7529 30 1 1.2929 1.0339 7.7456 31 1 -0.3633 0.5143 0.8896 32 1 -0.3633 0.5133 -0.8904 33 1 -0.3633 -1.0277 0.0005 34 1 1.6572 -0.2207 -2.1399 35 1 1.6978 -1.7556 -1.2389 36 1 3.9142 0.3410 -1.3673 37 1 3.9438 -1.2829 -2.0985 38 1 5.9944 -4.7117 -0.4235 39 1 7.7856 -3.0806 -6.0361 40 1 6.6650 -4.1934 -6.8571 41 1 6.0285 -2.8221 -5.9176 42 1 7.1028 -6.2749 -3.8625 43 1 6.5865 -6.3490 -5.5645 44 1 8.2479 -5.8556 -5.1588 45 1 5.7692 -1.9938 -4.4313 46 1 3.9142 0.3410 1.3673 47 1 3.9417 -1.2845 2.0984 48 1 0.4154 0.0365 2.4454 49 1 1.9155 0.9884 2.5556 50 1 2.4173 -1.5872 3.5997 51 1 2.8652 -2.6538 6.7286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132819435.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:53 Heat of formation + Delta-G solvation = 55.192238 kcal Electronic energy + Delta-G solvation = -31017.711160 eV Core-core repulsion = 26953.550446 eV Total energy + Delta-G solvation = -4064.160714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58565 -39.83223 -37.94378 -37.23878 -35.08956 -34.33273 -33.47755 -31.81425 -31.18410 -29.66521 -28.97325 -28.19622 -26.63758 -25.44757 -24.46098 -23.61710 -23.07034 -22.35931 -21.11018 -20.33803 -19.30422 -18.22316 -17.89719 -17.13980 -16.82307 -16.22202 -15.81118 -15.39670 -15.16191 -14.87005 -14.76387 -14.67200 -14.34132 -14.10071 -13.77719 -13.55337 -13.43121 -13.11981 -13.07393 -12.97673 -12.79430 -12.59504 -12.55071 -12.39624 -12.02794 -11.73004 -11.63799 -11.51676 -11.06222 -10.90430 -10.73452 -10.66426 -10.46297 -10.42586 -10.13757 -10.09614 -10.04891 -9.85135 -9.52450 -9.00129 -8.77107 -8.39708 -8.11282 -6.80148 -5.64462 -2.93701 0.45689 0.83005 2.26350 2.79469 3.11961 3.50750 3.55231 3.57663 3.58627 3.90898 3.95966 4.06452 4.53641 4.58921 4.67213 4.74298 4.78696 4.92719 4.97172 5.03488 5.04501 5.06422 5.08577 5.23331 5.31721 5.39865 5.51146 5.68059 5.68586 5.76056 5.79316 5.82521 5.91755 6.05793 6.08350 6.13940 6.19399 6.21395 6.28445 6.34850 6.42566 6.55861 6.58427 6.66966 6.80854 6.90780 6.99616 7.04512 7.46966 7.65319 7.79506 8.33562 8.53491 9.64280 10.23195 10.57495 11.57938 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.002392 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.302088 B =11702.039043 C =13016.039638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.070 0.930 4 C -0.129 4.129 5 C 0.082 3.918 6 N -0.590 5.590 7 C 0.576 3.424 8 O -0.527 6.527 9 C -0.038 4.038 10 C 0.172 3.828 11 N -0.507 5.507 12 C 0.370 3.630 13 N -0.601 5.601 14 C 0.088 3.912 15 C 0.087 3.913 16 C -0.017 4.017 17 N -0.365 5.365 18 C 0.119 3.881 19 C -0.100 4.100 20 H 0.073 0.927 21 C 0.159 3.841 22 N -0.733 5.733 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.014 4.014 26 N -0.930 5.930 27 Si 0.906 3.094 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.129 0.871 38 H 0.183 0.817 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.171 0.829 46 H 0.067 0.933 47 H 0.104 0.896 48 H 0.027 0.973 49 H 0.018 0.982 50 H 0.385 0.615 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.792 -2.123 -30.591 31.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.167 4.167 5 C -0.040 4.040 6 N -0.322 5.322 7 C 0.361 3.639 8 O -0.402 6.402 9 C -0.179 4.179 10 C 0.010 3.990 11 N -0.229 5.229 12 C 0.130 3.870 13 N -0.313 5.313 14 C -0.055 4.055 15 C -0.056 4.056 16 C -0.187 4.187 17 N -0.081 5.081 18 C -0.003 4.003 19 C -0.120 4.120 20 H 0.091 0.909 21 C 0.031 3.969 22 N -0.377 5.377 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.210 4.210 26 N -0.578 5.578 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.200 0.800 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.188 0.812 46 H 0.085 0.915 47 H 0.122 0.878 48 H 0.044 0.956 49 H 0.036 0.964 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.023 -2.350 -30.014 30.914 hybrid contribution -0.139 0.087 0.805 0.822 sum 6.883 -2.263 -29.209 30.094 Atomic orbital electron populations 1.21882 0.95170 1.01837 1.01568 1.21106 0.95773 0.99382 0.94156 0.91154 1.22020 0.95617 1.01047 0.98059 1.22654 0.93547 1.00273 0.87565 1.47980 1.41864 1.34049 1.08277 1.17540 0.79684 0.79806 0.86847 1.90874 1.57767 1.60312 1.31294 1.21793 1.07497 0.94925 0.93639 1.23520 0.87555 0.92422 0.95461 1.68089 1.20998 1.35942 0.97908 1.19586 0.89585 0.90496 0.87300 1.46190 1.66937 1.12265 1.05876 1.21848 1.02387 0.95300 0.85949 1.21774 0.99129 0.80342 1.04379 1.23308 1.03576 0.93886 0.97974 1.68184 1.08306 1.33658 0.97998 1.21788 0.93715 0.99176 0.85587 1.21699 0.94458 1.00702 0.95143 0.90850 1.20727 0.96774 0.94053 0.85373 1.42424 1.65201 1.29331 1.00790 1.19198 1.27703 1.06354 0.83815 0.91286 1.24755 1.00921 0.97602 0.97764 1.69679 1.42257 1.17424 1.28437 0.86213 0.77535 0.77892 0.84674 1.21849 1.21821 1.20845 0.91708 0.93335 0.92884 0.91199 0.92005 0.91786 0.85460 0.80039 0.92183 0.90349 0.90575 0.88789 0.92333 0.92379 0.81192 0.91510 0.87769 0.95557 0.96404 0.78106 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.81 37.16 0.33 -1.53 16 2 C -0.09 -1.14 2.23 -90.58 -0.20 -1.34 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.13 -1.50 5.36 -26.61 -0.14 -1.64 16 5 C 0.08 1.01 6.00 -3.71 -0.02 0.99 16 6 N -0.59 -9.31 2.97 -173.89 -0.52 -9.83 16 7 C 0.58 9.77 7.60 -12.34 -0.09 9.68 16 8 O -0.53 -10.91 15.98 5.31 0.08 -10.83 16 9 C -0.04 -0.52 6.42 -82.88 -0.53 -1.06 16 10 C 0.17 2.18 10.76 -17.02 -0.18 1.99 16 11 N -0.51 -5.81 8.99 -11.95 -0.11 -5.91 16 12 C 0.37 3.50 7.37 -154.99 -1.14 2.35 16 13 N -0.60 -3.96 3.37 -189.52 -0.64 -4.60 16 14 C 0.09 0.26 10.32 59.84 0.62 0.88 16 15 C 0.09 0.48 10.71 59.85 0.64 1.12 16 16 C -0.02 -0.15 10.42 -17.10 -0.18 -0.33 16 17 N -0.37 -4.20 6.57 -9.44 -0.06 -4.26 16 18 C 0.12 2.14 5.52 -3.71 -0.02 2.12 16 19 C -0.10 -1.73 1.92 -90.50 -0.17 -1.90 16 20 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 21 C 0.16 3.28 5.41 -4.04 -0.02 3.26 16 22 N -0.73 -19.30 5.38 -59.90 -0.32 -19.63 16 23 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 24 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 25 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 26 N -0.93 -29.40 13.06 55.49 0.72 -28.68 16 27 Si 0.91 23.19 29.55 -169.99 -5.02 18.16 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 30 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 31 H 0.06 0.88 6.30 -51.93 -0.33 0.55 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.13 1.48 4.00 -76.45 -0.31 1.18 16 38 H 0.18 2.20 7.81 -52.49 -0.41 1.79 16 39 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.08 0.11 8.07 -51.93 -0.42 -0.31 16 41 H 0.08 0.15 5.98 -51.93 -0.31 -0.16 16 42 H 0.09 0.68 6.82 -51.93 -0.35 0.33 16 43 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.17 0.90 6.02 -52.48 -0.32 0.58 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.10 2.28 6.21 -51.93 -0.32 1.96 16 48 H 0.03 0.55 6.15 -51.93 -0.32 0.23 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.38 10.86 6.89 -40.82 -0.28 10.58 16 51 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 399.62 15.07 6.02 6.02 Total: -1.00 -35.63 399.62 -9.20 -44.82 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.98 Total: 7.74 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -1.37 Total: 7.00 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -0.92 Total: -72.91 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.63 -9.20 -44.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132819435.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.017 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds