Wall clock time and date at job start Wed Apr 1 2020 06:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.44730 * 2 1 4 4 C 1.53038 * 109.46163 * 240.03502 * 2 1 3 5 5 C 1.53198 * 109.31413 * 178.61213 * 4 2 1 6 6 N 1.46924 * 108.77207 * 54.63490 * 5 4 2 7 7 C 1.34784 * 120.63099 * 126.36844 * 6 5 4 8 8 O 1.21561 * 119.99981 * 179.38808 * 7 6 5 9 9 C 1.47819 * 119.99721 * 359.39184 * 7 6 5 10 10 C 1.39451 * 120.00267 * 203.35632 * 9 7 6 11 11 N 1.32024 * 119.98431 * 179.97438 * 10 9 7 12 12 C 1.32789 * 119.98498 * 0.02562 * 11 10 9 13 13 N 1.38414 * 119.99418 * 179.97438 * 12 11 10 14 14 C 1.46492 * 120.00087 * 184.99942 * 13 12 11 15 15 C 1.46500 * 119.99690 * 5.00125 * 13 12 11 16 16 C 1.39843 * 120.01271 * 359.97438 * 12 11 10 17 17 N 1.31481 * 120.01872 * 359.78634 * 16 12 11 18 18 C 1.46926 * 118.74164 * 306.39384 * 6 5 4 19 19 C 1.53035 * 109.46042 * 119.96675 * 2 1 3 20 20 H 1.08996 * 109.52729 * 61.42061 * 19 2 1 21 21 C 1.53002 * 109.49592 * 301.33743 * 19 2 1 22 22 N 1.46507 * 109.46973 * 175.16090 * 21 19 2 23 23 C 1.36937 * 119.99765 * 180.02562 * 22 21 19 24 24 H 1.08000 * 120.00465 * 359.97438 * 23 22 21 25 25 C 1.38815 * 120.00010 * 180.02562 * 23 22 21 26 26 N 1.31623 * 119.99681 * 359.97438 * 25 23 22 27 27 Si 1.86791 * 120.00038 * 179.72319 * 25 23 22 28 28 H 1.48498 * 109.47172 * 90.00405 * 27 25 23 29 29 H 1.48504 * 109.47317 * 209.99948 * 27 25 23 30 30 H 1.48501 * 109.47444 * 330.00209 * 27 25 23 31 31 H 1.08990 * 109.47272 * 300.03546 * 1 2 3 32 32 H 1.09006 * 109.47017 * 60.03806 * 1 2 3 33 33 H 1.09006 * 109.47106 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.50106 * 58.66262 * 4 2 1 35 35 H 1.09003 * 109.52254 * 298.58155 * 4 2 1 36 36 H 1.08994 * 109.58484 * 294.85102 * 5 4 2 37 37 H 1.08995 * 109.70547 * 174.49050 * 5 4 2 38 38 H 1.08000 * 120.00720 * 359.95717 * 10 9 7 39 39 H 1.09002 * 109.47454 * 90.00047 * 14 13 12 40 40 H 1.09001 * 109.47403 * 210.00150 * 14 13 12 41 41 H 1.09000 * 109.47139 * 330.00223 * 14 13 12 42 42 H 1.09003 * 109.47384 * 359.97438 * 15 13 12 43 43 H 1.08996 * 109.47419 * 119.99915 * 15 13 12 44 44 H 1.08998 * 109.46850 * 239.99975 * 15 13 12 45 45 H 1.08004 * 119.99510 * 180.02562 * 16 12 11 46 46 H 1.09002 * 109.58099 * 293.82256 * 18 6 5 47 47 H 1.09002 * 109.58785 * 173.39931 * 18 6 5 48 48 H 1.09003 * 109.47391 * 55.16621 * 21 19 2 49 49 H 1.09000 * 109.47218 * 295.15938 * 21 19 2 50 50 H 0.96997 * 119.99660 * 0.02562 * 22 21 19 51 51 H 0.97001 * 119.99629 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5714 -0.6885 -1.2643 6 7 4.0678 -1.2487 0.0000 7 6 4.9614 -2.2578 0.0000 8 8 5.3729 -2.7052 1.0527 9 6 5.4411 -2.8202 -1.2801 10 6 5.9500 -4.1178 -1.3245 11 7 6.3778 -4.6199 -2.4680 12 6 6.3238 -3.8890 -3.5754 13 7 6.7728 -4.4151 -4.7743 14 6 6.8157 -3.5740 -5.9729 15 6 7.2050 -5.8132 -4.8446 16 6 5.8134 -2.5879 -3.5304 17 7 5.3829 -2.0891 -2.3926 18 6 3.5713 -0.6886 1.2643 19 6 2.0398 -0.7207 1.2500 20 1 1.6978 -1.7556 1.2389 21 6 1.5027 -0.0188 2.4989 22 7 1.8949 -0.7751 3.6909 23 6 1.5239 -0.3353 4.9335 24 1 0.9425 0.5692 5.0350 25 6 1.8960 -1.0515 6.0629 26 7 2.6049 -2.1536 5.9393 27 14 1.3965 -0.4474 7.7584 28 1 0.0817 -1.0325 8.1249 29 1 2.4178 -0.8636 8.7529 30 1 1.2929 1.0339 7.7456 31 1 -0.3633 0.5143 0.8896 32 1 -0.3633 0.5133 -0.8904 33 1 -0.3633 -1.0277 0.0005 34 1 1.6572 -0.2207 -2.1399 35 1 1.6978 -1.7556 -1.2389 36 1 3.9142 0.3410 -1.3673 37 1 3.9438 -1.2829 -2.0985 38 1 5.9944 -4.7117 -0.4235 39 1 7.7856 -3.0806 -6.0361 40 1 6.6650 -4.1934 -6.8571 41 1 6.0285 -2.8221 -5.9176 42 1 7.1028 -6.2749 -3.8625 43 1 6.5865 -6.3490 -5.5645 44 1 8.2479 -5.8556 -5.1588 45 1 5.7692 -1.9938 -4.4313 46 1 3.9142 0.3410 1.3673 47 1 3.9417 -1.2845 2.0984 48 1 0.4154 0.0365 2.4454 49 1 1.9155 0.9884 2.5556 50 1 2.4173 -1.5872 3.5997 51 1 2.8652 -2.6538 6.7286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132819435.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:52 Heat of formation + Delta-G solvation = 31.015833 kcal Electronic energy + Delta-G solvation = -31018.759528 eV Core-core repulsion = 26953.550446 eV Total energy + Delta-G solvation = -4065.209081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.46677 -41.01266 -39.18291 -37.97541 -36.64776 -35.51448 -34.75984 -33.51530 -32.15026 -31.31386 -29.38439 -29.29656 -27.73309 -26.84357 -25.35279 -24.94698 -24.50945 -23.18620 -22.56151 -21.56635 -20.54011 -19.21324 -19.01580 -18.54906 -18.03053 -17.25235 -16.76146 -16.70354 -16.31754 -16.10640 -15.76785 -15.58515 -15.45989 -15.37234 -15.17646 -14.84631 -14.69963 -14.37095 -14.32041 -14.00516 -13.94403 -13.44819 -13.34886 -13.09887 -13.03682 -12.94027 -12.79631 -12.67230 -12.63875 -12.48927 -12.25299 -12.16964 -11.90477 -11.85912 -11.65961 -11.39255 -11.22650 -11.15106 -11.02556 -10.91197 -9.95751 -9.65962 -8.98554 -8.78465 -7.93001 -5.23374 -0.44385 0.01948 1.45151 1.48594 1.57041 1.64269 1.69208 1.94917 2.56294 2.66426 2.99869 3.19370 3.36019 3.39540 3.60291 3.74246 3.85817 3.90525 3.99510 4.11263 4.20196 4.25508 4.33369 4.37392 4.50908 4.53050 4.56064 4.62333 4.63310 4.77127 4.78270 4.81230 4.86426 4.95641 4.96298 4.97528 5.03321 5.10133 5.13485 5.21369 5.24940 5.32383 5.46422 5.49467 5.58642 5.65242 5.65765 5.93724 6.25707 6.27486 6.39410 6.72306 7.07390 7.32632 8.09518 8.32005 9.30653 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.002392 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.302088 B =11702.039043 C =13016.039638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.083 0.917 4 C -0.121 4.121 5 C 0.080 3.920 6 N -0.589 5.589 7 C 0.568 3.432 8 O -0.584 6.584 9 C -0.066 4.066 10 C 0.168 3.832 11 N -0.525 5.525 12 C 0.370 3.630 13 N -0.590 5.590 14 C 0.076 3.924 15 C 0.081 3.919 16 C 0.003 3.997 17 N -0.369 5.369 18 C 0.126 3.874 19 C -0.087 4.087 20 H 0.049 0.951 21 C 0.158 3.842 22 N -0.748 5.748 23 C -0.243 4.243 24 H 0.080 0.920 25 C -0.082 4.082 26 N -0.973 5.973 27 Si 0.978 3.022 28 H -0.285 1.285 29 H -0.297 1.297 30 H -0.266 1.266 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.170 0.830 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.216 0.784 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.035 0.965 49 H 0.024 0.976 50 H 0.370 0.630 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.153 -0.293 -35.070 35.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.102 0.898 4 C -0.159 4.159 5 C -0.041 4.041 6 N -0.320 5.320 7 C 0.356 3.644 8 O -0.464 6.464 9 C -0.204 4.204 10 C 0.007 3.993 11 N -0.249 5.249 12 C 0.127 3.873 13 N -0.300 5.300 14 C -0.065 4.065 15 C -0.062 4.062 16 C -0.171 4.171 17 N -0.085 5.085 18 C 0.003 3.997 19 C -0.106 4.106 20 H 0.067 0.933 21 C 0.031 3.969 22 N -0.391 5.391 23 C -0.375 4.375 24 H 0.098 0.902 25 C -0.274 4.274 26 N -0.624 5.624 27 Si 0.806 3.194 28 H -0.212 1.212 29 H -0.224 1.224 30 H -0.191 1.191 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.127 0.873 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.158 0.842 38 H 0.187 0.813 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.232 0.768 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.053 0.947 49 H 0.042 0.958 50 H 0.201 0.799 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.346 -0.474 -34.561 35.141 hybrid contribution 0.154 -0.525 1.867 1.946 sum 6.499 -1.000 -32.693 33.348 Atomic orbital electron populations 1.21850 0.94174 1.01618 1.02461 1.21101 0.96503 0.99576 0.92601 0.89823 1.22000 0.94825 1.00640 0.98431 1.22951 0.94134 1.01067 0.85985 1.48080 1.41431 1.33784 1.08660 1.18111 0.79216 0.79454 0.87599 1.90826 1.59811 1.62096 1.33668 1.21127 1.10636 0.95550 0.93046 1.23318 0.87911 0.92210 0.95887 1.68109 1.22078 1.36533 0.98163 1.19973 0.88861 0.90816 0.87672 1.46635 1.64572 1.13046 1.05762 1.22218 1.03664 0.95738 0.84861 1.21900 1.00594 0.79886 1.03808 1.24003 1.01125 0.93752 0.98192 1.68053 1.09025 1.33377 0.98013 1.21466 0.94285 0.98330 0.85601 1.21546 0.93665 0.99516 0.95895 0.93264 1.20916 0.97197 0.93855 0.84884 1.42689 1.65028 1.29321 1.02022 1.19673 1.26644 1.06241 0.84954 0.90232 1.25684 1.01657 0.98056 1.02009 1.69881 1.44257 1.19107 1.29113 0.85073 0.76854 0.78121 0.79308 1.21219 1.22425 1.19057 0.93035 0.90176 0.93686 0.87299 0.93083 0.90249 0.84177 0.81293 0.91045 0.88185 0.88924 0.90975 0.90269 0.90764 0.76791 0.91063 0.92812 0.94698 0.95829 0.79863 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.81 71.98 0.63 -2.66 16 2 C -0.08 -1.97 2.23 -10.77 -0.02 -1.99 16 3 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 4 C -0.12 -2.49 5.36 30.67 0.16 -2.33 16 5 C 0.08 1.83 6.00 86.36 0.52 2.34 16 6 N -0.59 -19.38 2.97 -822.33 -2.44 -21.83 16 7 C 0.57 20.86 7.60 86.78 0.66 21.52 16 8 O -0.58 -27.05 15.98 -3.91 -0.06 -27.11 16 9 C -0.07 -1.88 6.42 41.76 0.27 -1.62 16 10 C 0.17 4.55 10.76 84.96 0.91 5.46 16 11 N -0.53 -12.05 8.99 -191.73 -1.72 -13.77 16 12 C 0.37 6.17 7.37 133.32 0.98 7.15 16 13 N -0.59 -5.77 3.37 -753.52 -2.54 -8.32 16 14 C 0.08 0.08 10.32 127.77 1.32 1.40 16 15 C 0.08 0.68 10.71 127.77 1.37 2.05 16 16 C 0.00 0.05 10.42 85.13 0.89 0.93 16 17 N -0.37 -7.91 6.57 -183.79 -1.21 -9.12 16 18 C 0.13 4.83 5.52 86.36 0.48 5.31 16 19 C -0.09 -3.08 1.92 -10.72 -0.02 -3.10 16 20 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 21 C 0.16 6.68 5.41 86.38 0.47 7.15 16 22 N -0.75 -41.27 5.38 -343.42 -1.85 -43.11 16 23 C -0.24 -14.42 9.99 84.03 0.84 -13.58 16 24 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 25 C -0.08 -5.04 5.50 84.86 0.47 -4.58 16 26 N -0.97 -64.44 13.06 21.65 0.28 -64.16 16 27 Si 0.98 48.77 29.55 68.60 2.03 50.79 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 29 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 30 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 31 H 0.05 1.31 6.30 -2.39 -0.02 1.30 16 32 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.14 2.94 4.00 -50.80 -0.20 2.74 16 38 H 0.17 4.77 7.81 -2.91 -0.02 4.75 16 39 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.10 -0.23 8.07 -2.39 -0.02 -0.25 16 41 H 0.09 -0.17 5.98 -2.39 -0.01 -0.18 16 42 H 0.07 0.98 6.82 -2.39 -0.02 0.97 16 43 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.22 1.05 6.02 -2.91 -0.02 1.04 16 46 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.05 2.62 6.21 -2.39 -0.01 2.60 16 48 H 0.04 1.44 6.15 -2.39 -0.01 1.43 16 49 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.37 22.43 6.89 -92.71 -0.64 21.79 16 51 H 0.25 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -84.11 399.62 2.52 -81.59 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.12 Total: 31.57 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 9.92 Total: 23.47 kcal Atomic # 7 Polarization: -150.83 SS G_CDS: -9.48 Total: -160.31 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.06 Total: -27.11 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.79 kcal Total: -84.11 2.52 -81.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132819435.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.605 kcal (2) G-P(sol) polarization free energy of solvation -84.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds