Wall clock time and date at job start Wed Apr 1 2020 06:29:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09007 * 109.44730 * 2 1
4 4 C 1.53038 * 109.46163 * 240.03502 * 2 1 3
5 5 C 1.53198 * 109.31413 * 178.61213 * 4 2 1
6 6 N 1.46924 * 108.77207 * 54.63490 * 5 4 2
7 7 C 1.34784 * 120.63099 * 126.36844 * 6 5 4
8 8 O 1.21561 * 119.99981 * 179.38808 * 7 6 5
9 9 C 1.47819 * 119.99721 * 359.39184 * 7 6 5
10 10 C 1.39451 * 120.00267 * 203.35632 * 9 7 6
11 11 N 1.32024 * 119.98431 * 179.97438 * 10 9 7
12 12 C 1.32789 * 119.98498 * 0.02562 * 11 10 9
13 13 N 1.38414 * 119.99418 * 179.97438 * 12 11 10
14 14 C 1.46492 * 120.00087 * 184.99942 * 13 12 11
15 15 C 1.46500 * 119.99690 * 5.00125 * 13 12 11
16 16 C 1.39843 * 120.01271 * 359.97438 * 12 11 10
17 17 N 1.31481 * 120.01872 * 359.78634 * 16 12 11
18 18 C 1.46926 * 118.74164 * 306.39384 * 6 5 4
19 19 C 1.53035 * 109.46042 * 119.96675 * 2 1 3
20 20 H 1.08996 * 109.52729 * 61.42061 * 19 2 1
21 21 C 1.53002 * 109.49592 * 301.33743 * 19 2 1
22 22 N 1.46507 * 109.46973 * 175.16090 * 21 19 2
23 23 C 1.36937 * 119.99765 * 180.02562 * 22 21 19
24 24 H 1.08000 * 120.00465 * 359.97438 * 23 22 21
25 25 C 1.38815 * 120.00010 * 180.02562 * 23 22 21
26 26 N 1.31623 * 119.99681 * 359.97438 * 25 23 22
27 27 Si 1.86791 * 120.00038 * 179.72319 * 25 23 22
28 28 H 1.48498 * 109.47172 * 90.00405 * 27 25 23
29 29 H 1.48504 * 109.47317 * 209.99948 * 27 25 23
30 30 H 1.48501 * 109.47444 * 330.00209 * 27 25 23
31 31 H 1.08990 * 109.47272 * 300.03546 * 1 2 3
32 32 H 1.09006 * 109.47017 * 60.03806 * 1 2 3
33 33 H 1.09006 * 109.47106 * 180.02562 * 1 2 3
34 34 H 1.09000 * 109.50106 * 58.66262 * 4 2 1
35 35 H 1.09003 * 109.52254 * 298.58155 * 4 2 1
36 36 H 1.08994 * 109.58484 * 294.85102 * 5 4 2
37 37 H 1.08995 * 109.70547 * 174.49050 * 5 4 2
38 38 H 1.08000 * 120.00720 * 359.95717 * 10 9 7
39 39 H 1.09002 * 109.47454 * 90.00047 * 14 13 12
40 40 H 1.09001 * 109.47403 * 210.00150 * 14 13 12
41 41 H 1.09000 * 109.47139 * 330.00223 * 14 13 12
42 42 H 1.09003 * 109.47384 * 359.97438 * 15 13 12
43 43 H 1.08996 * 109.47419 * 119.99915 * 15 13 12
44 44 H 1.08998 * 109.46850 * 239.99975 * 15 13 12
45 45 H 1.08004 * 119.99510 * 180.02562 * 16 12 11
46 46 H 1.09002 * 109.58099 * 293.82256 * 18 6 5
47 47 H 1.09002 * 109.58785 * 173.39931 * 18 6 5
48 48 H 1.09003 * 109.47391 * 55.16621 * 21 19 2
49 49 H 1.09000 * 109.47218 * 295.15938 * 21 19 2
50 50 H 0.96997 * 119.99660 * 0.02562 * 22 21 19
51 51 H 0.97001 * 119.99629 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8929 1.0279 0.0000
4 6 2.0398 -0.7207 -1.2501
5 6 3.5714 -0.6885 -1.2643
6 7 4.0678 -1.2487 0.0000
7 6 4.9614 -2.2578 0.0000
8 8 5.3729 -2.7052 1.0527
9 6 5.4411 -2.8202 -1.2801
10 6 5.9500 -4.1178 -1.3245
11 7 6.3778 -4.6199 -2.4680
12 6 6.3238 -3.8890 -3.5754
13 7 6.7728 -4.4151 -4.7743
14 6 6.8157 -3.5740 -5.9729
15 6 7.2050 -5.8132 -4.8446
16 6 5.8134 -2.5879 -3.5304
17 7 5.3829 -2.0891 -2.3926
18 6 3.5713 -0.6886 1.2643
19 6 2.0398 -0.7207 1.2500
20 1 1.6978 -1.7556 1.2389
21 6 1.5027 -0.0188 2.4989
22 7 1.8949 -0.7751 3.6909
23 6 1.5239 -0.3353 4.9335
24 1 0.9425 0.5692 5.0350
25 6 1.8960 -1.0515 6.0629
26 7 2.6049 -2.1536 5.9393
27 14 1.3965 -0.4474 7.7584
28 1 0.0817 -1.0325 8.1249
29 1 2.4178 -0.8636 8.7529
30 1 1.2929 1.0339 7.7456
31 1 -0.3633 0.5143 0.8896
32 1 -0.3633 0.5133 -0.8904
33 1 -0.3633 -1.0277 0.0005
34 1 1.6572 -0.2207 -2.1399
35 1 1.6978 -1.7556 -1.2389
36 1 3.9142 0.3410 -1.3673
37 1 3.9438 -1.2829 -2.0985
38 1 5.9944 -4.7117 -0.4235
39 1 7.7856 -3.0806 -6.0361
40 1 6.6650 -4.1934 -6.8571
41 1 6.0285 -2.8221 -5.9176
42 1 7.1028 -6.2749 -3.8625
43 1 6.5865 -6.3490 -5.5645
44 1 8.2479 -5.8556 -5.1588
45 1 5.7692 -1.9938 -4.4313
46 1 3.9142 0.3410 1.3673
47 1 3.9417 -1.2845 2.0984
48 1 0.4154 0.0365 2.4454
49 1 1.9155 0.9884 2.5556
50 1 2.4173 -1.5872 3.5997
51 1 2.8652 -2.6538 6.7286
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001132819435.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:29:52
Heat of formation + Delta-G solvation = 31.015833 kcal
Electronic energy + Delta-G solvation = -31018.759528 eV
Core-core repulsion = 26953.550446 eV
Total energy + Delta-G solvation = -4065.209081 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.46677 -41.01266 -39.18291 -37.97541 -36.64776 -35.51448 -34.75984 -33.51530
-32.15026 -31.31386 -29.38439 -29.29656 -27.73309 -26.84357 -25.35279 -24.94698
-24.50945 -23.18620 -22.56151 -21.56635 -20.54011 -19.21324 -19.01580 -18.54906
-18.03053 -17.25235 -16.76146 -16.70354 -16.31754 -16.10640 -15.76785 -15.58515
-15.45989 -15.37234 -15.17646 -14.84631 -14.69963 -14.37095 -14.32041 -14.00516
-13.94403 -13.44819 -13.34886 -13.09887 -13.03682 -12.94027 -12.79631 -12.67230
-12.63875 -12.48927 -12.25299 -12.16964 -11.90477 -11.85912 -11.65961 -11.39255
-11.22650 -11.15106 -11.02556 -10.91197 -9.95751 -9.65962 -8.98554 -8.78465
-7.93001 -5.23374 -0.44385 0.01948 1.45151 1.48594 1.57041 1.64269
1.69208 1.94917 2.56294 2.66426 2.99869 3.19370 3.36019 3.39540
3.60291 3.74246 3.85817 3.90525 3.99510 4.11263 4.20196 4.25508
4.33369 4.37392 4.50908 4.53050 4.56064 4.62333 4.63310 4.77127
4.78270 4.81230 4.86426 4.95641 4.96298 4.97528 5.03321 5.10133
5.13485 5.21369 5.24940 5.32383 5.46422 5.49467 5.58642 5.65242
5.65765 5.93724 6.25707 6.27486 6.39410 6.72306 7.07390 7.32632
8.09518 8.32005 9.30653
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.016591 B = 0.002392 C = 0.002151
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1687.302088 B =11702.039043 C =13016.039638
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.079 4.079
3 H 0.083 0.917
4 C -0.121 4.121
5 C 0.080 3.920
6 N -0.589 5.589
7 C 0.568 3.432
8 O -0.584 6.584
9 C -0.066 4.066
10 C 0.168 3.832
11 N -0.525 5.525
12 C 0.370 3.630
13 N -0.590 5.590
14 C 0.076 3.924
15 C 0.081 3.919
16 C 0.003 3.997
17 N -0.369 5.369
18 C 0.126 3.874
19 C -0.087 4.087
20 H 0.049 0.951
21 C 0.158 3.842
22 N -0.748 5.748
23 C -0.243 4.243
24 H 0.080 0.920
25 C -0.082 4.082
26 N -0.973 5.973
27 Si 0.978 3.022
28 H -0.285 1.285
29 H -0.297 1.297
30 H -0.266 1.266
31 H 0.051 0.949
32 H 0.079 0.921
33 H 0.044 0.956
34 H 0.109 0.891
35 H 0.050 0.950
36 H 0.079 0.921
37 H 0.142 0.858
38 H 0.170 0.830
39 H 0.071 0.929
40 H 0.100 0.900
41 H 0.092 0.908
42 H 0.071 0.929
43 H 0.079 0.921
44 H 0.074 0.926
45 H 0.216 0.784
46 H 0.071 0.929
47 H 0.053 0.947
48 H 0.035 0.965
49 H 0.024 0.976
50 H 0.370 0.630
51 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.153 -0.293 -35.070 35.607
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.098 4.098
3 H 0.102 0.898
4 C -0.159 4.159
5 C -0.041 4.041
6 N -0.320 5.320
7 C 0.356 3.644
8 O -0.464 6.464
9 C -0.204 4.204
10 C 0.007 3.993
11 N -0.249 5.249
12 C 0.127 3.873
13 N -0.300 5.300
14 C -0.065 4.065
15 C -0.062 4.062
16 C -0.171 4.171
17 N -0.085 5.085
18 C 0.003 3.997
19 C -0.106 4.106
20 H 0.067 0.933
21 C 0.031 3.969
22 N -0.391 5.391
23 C -0.375 4.375
24 H 0.098 0.902
25 C -0.274 4.274
26 N -0.624 5.624
27 Si 0.806 3.194
28 H -0.212 1.212
29 H -0.224 1.224
30 H -0.191 1.191
31 H 0.070 0.930
32 H 0.098 0.902
33 H 0.063 0.937
34 H 0.127 0.873
35 H 0.069 0.931
36 H 0.098 0.902
37 H 0.158 0.842
38 H 0.187 0.813
39 H 0.090 0.910
40 H 0.118 0.882
41 H 0.111 0.889
42 H 0.090 0.910
43 H 0.097 0.903
44 H 0.092 0.908
45 H 0.232 0.768
46 H 0.089 0.911
47 H 0.072 0.928
48 H 0.053 0.947
49 H 0.042 0.958
50 H 0.201 0.799
51 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 6.346 -0.474 -34.561 35.141
hybrid contribution 0.154 -0.525 1.867 1.946
sum 6.499 -1.000 -32.693 33.348
Atomic orbital electron populations
1.21850 0.94174 1.01618 1.02461 1.21101 0.96503 0.99576 0.92601
0.89823 1.22000 0.94825 1.00640 0.98431 1.22951 0.94134 1.01067
0.85985 1.48080 1.41431 1.33784 1.08660 1.18111 0.79216 0.79454
0.87599 1.90826 1.59811 1.62096 1.33668 1.21127 1.10636 0.95550
0.93046 1.23318 0.87911 0.92210 0.95887 1.68109 1.22078 1.36533
0.98163 1.19973 0.88861 0.90816 0.87672 1.46635 1.64572 1.13046
1.05762 1.22218 1.03664 0.95738 0.84861 1.21900 1.00594 0.79886
1.03808 1.24003 1.01125 0.93752 0.98192 1.68053 1.09025 1.33377
0.98013 1.21466 0.94285 0.98330 0.85601 1.21546 0.93665 0.99516
0.95895 0.93264 1.20916 0.97197 0.93855 0.84884 1.42689 1.65028
1.29321 1.02022 1.19673 1.26644 1.06241 0.84954 0.90232 1.25684
1.01657 0.98056 1.02009 1.69881 1.44257 1.19107 1.29113 0.85073
0.76854 0.78121 0.79308 1.21219 1.22425 1.19057 0.93035 0.90176
0.93686 0.87299 0.93083 0.90249 0.84177 0.81293 0.91045 0.88185
0.88924 0.90975 0.90269 0.90764 0.76791 0.91063 0.92812 0.94698
0.95829 0.79863 0.94152
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.30 8.81 71.98 0.63 -2.66 16
2 C -0.08 -1.97 2.23 -10.77 -0.02 -1.99 16
3 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16
4 C -0.12 -2.49 5.36 30.67 0.16 -2.33 16
5 C 0.08 1.83 6.00 86.36 0.52 2.34 16
6 N -0.59 -19.38 2.97 -822.33 -2.44 -21.83 16
7 C 0.57 20.86 7.60 86.78 0.66 21.52 16
8 O -0.58 -27.05 15.98 -3.91 -0.06 -27.11 16
9 C -0.07 -1.88 6.42 41.76 0.27 -1.62 16
10 C 0.17 4.55 10.76 84.96 0.91 5.46 16
11 N -0.53 -12.05 8.99 -191.73 -1.72 -13.77 16
12 C 0.37 6.17 7.37 133.32 0.98 7.15 16
13 N -0.59 -5.77 3.37 -753.52 -2.54 -8.32 16
14 C 0.08 0.08 10.32 127.77 1.32 1.40 16
15 C 0.08 0.68 10.71 127.77 1.37 2.05 16
16 C 0.00 0.05 10.42 85.13 0.89 0.93 16
17 N -0.37 -7.91 6.57 -183.79 -1.21 -9.12 16
18 C 0.13 4.83 5.52 86.36 0.48 5.31 16
19 C -0.09 -3.08 1.92 -10.72 -0.02 -3.10 16
20 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16
21 C 0.16 6.68 5.41 86.38 0.47 7.15 16
22 N -0.75 -41.27 5.38 -343.42 -1.85 -43.11 16
23 C -0.24 -14.42 9.99 84.03 0.84 -13.58 16
24 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16
25 C -0.08 -5.04 5.50 84.86 0.47 -4.58 16
26 N -0.97 -64.44 13.06 21.65 0.28 -64.16 16
27 Si 0.98 48.77 29.55 68.60 2.03 50.79 16
28 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16
29 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16
30 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16
31 H 0.05 1.31 6.30 -2.39 -0.02 1.30 16
32 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16
33 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16
34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16
35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16
36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
37 H 0.14 2.94 4.00 -50.80 -0.20 2.74 16
38 H 0.17 4.77 7.81 -2.91 -0.02 4.75 16
39 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16
40 H 0.10 -0.23 8.07 -2.39 -0.02 -0.25 16
41 H 0.09 -0.17 5.98 -2.39 -0.01 -0.18 16
42 H 0.07 0.98 6.82 -2.39 -0.02 0.97 16
43 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16
44 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16
45 H 0.22 1.05 6.02 -2.91 -0.02 1.04 16
46 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16
47 H 0.05 2.62 6.21 -2.39 -0.01 2.60 16
48 H 0.04 1.44 6.15 -2.39 -0.01 1.43 16
49 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16
50 H 0.37 22.43 6.89 -92.71 -0.64 21.79 16
51 H 0.25 16.01 8.31 -92.71 -0.77 15.24 16
Total: -1.00 -84.11 399.62 2.52 -81.59
By element:
Atomic # 1 Polarization: 31.45 SS G_CDS: 0.12 Total: 31.57 kcal
Atomic # 6 Polarization: 13.55 SS G_CDS: 9.92 Total: 23.47 kcal
Atomic # 7 Polarization: -150.83 SS G_CDS: -9.48 Total: -160.31 kcal
Atomic # 8 Polarization: -27.05 SS G_CDS: -0.06 Total: -27.11 kcal
Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.79 kcal
Total: -84.11 2.52 -81.59 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001132819435.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.605 kcal
(2) G-P(sol) polarization free energy of solvation -84.112 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.493 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.589 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.016 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds