Wall clock time and date at job start Wed Apr 1 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.45555 * 2 1 4 4 C 1.53039 * 109.45151 * 119.96543 * 2 1 3 5 5 C 1.53625 * 109.23865 * 58.52499 * 4 2 1 6 6 N 1.46926 * 108.54385 * 54.85885 * 5 4 2 7 7 C 1.34778 * 120.63210 * 126.36755 * 6 5 4 8 8 O 1.21562 * 120.00238 * 187.40586 * 7 6 5 9 9 C 1.47823 * 119.99935 * 7.40225 * 7 6 5 10 10 C 1.39452 * 120.00095 * 189.45751 * 9 7 6 11 11 N 1.32026 * 119.97722 * 179.97438 * 10 9 7 12 12 C 1.32781 * 119.99156 * 359.97438 * 11 10 9 13 13 N 1.38413 * 119.99590 * 179.97438 * 12 11 10 14 14 C 1.46505 * 119.99934 * 185.00122 * 13 12 11 15 15 C 1.46499 * 119.99613 * 5.00237 * 13 12 11 16 16 C 1.39856 * 120.01157 * 0.02562 * 12 11 10 17 17 N 1.31474 * 120.01319 * 359.97438 * 16 12 11 18 18 C 1.46926 * 118.73887 * 306.09246 * 6 5 4 19 19 C 1.53039 * 109.46171 * 240.03197 * 2 1 3 20 20 H 1.08995 * 109.49761 * 181.40761 * 19 2 1 21 21 C 1.52994 * 109.52474 * 61.32109 * 19 2 1 22 22 N 1.46505 * 109.47136 * 175.14874 * 21 19 2 23 23 C 1.36933 * 119.99943 * 180.02562 * 22 21 19 24 24 H 1.07999 * 120.00385 * 0.02562 * 23 22 21 25 25 C 1.38814 * 119.99942 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99971 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00422 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47048 * 59.99374 * 27 25 23 29 29 H 1.48498 * 109.47488 * 180.02562 * 27 25 23 30 30 H 1.48509 * 109.46914 * 300.00114 * 27 25 23 31 31 H 1.09003 * 109.46878 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47078 * 299.96886 * 1 2 3 33 33 H 1.08997 * 109.47231 * 59.97241 * 1 2 3 34 34 H 1.08995 * 109.49910 * 178.59771 * 4 2 1 35 35 H 1.09006 * 109.49926 * 298.70317 * 4 2 1 36 36 H 1.08993 * 109.74554 * 295.11931 * 5 4 2 37 37 H 1.09008 * 109.66129 * 174.54903 * 5 4 2 38 38 H 1.07992 * 120.00993 * 0.02562 * 10 9 7 39 39 H 1.09000 * 109.47299 * 60.00336 * 14 13 12 40 40 H 1.09004 * 109.46466 * 180.02562 * 14 13 12 41 41 H 1.08996 * 109.46759 * 299.99871 * 14 13 12 42 42 H 1.08997 * 109.47195 * 90.00070 * 15 13 12 43 43 H 1.09000 * 109.46758 * 209.99720 * 15 13 12 44 44 H 1.08998 * 109.47551 * 329.99719 * 15 13 12 45 45 H 1.07992 * 119.99008 * 180.27991 * 16 12 11 46 46 H 1.08991 * 109.58830 * 173.64667 * 18 6 5 47 47 H 1.09007 * 109.58424 * 294.07477 * 18 6 5 48 48 H 1.09003 * 109.47560 * 295.14366 * 21 19 2 49 49 H 1.08999 * 109.47305 * 55.14841 * 21 19 2 50 50 H 0.97001 * 119.99625 * 0.02562 * 22 21 19 51 51 H 0.97005 * 119.99950 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0396 -0.7208 1.2501 5 6 1.4941 -2.1568 1.2643 6 7 1.8620 -2.8089 0.0001 7 6 2.5149 -3.9880 0.0002 8 8 2.9325 -4.4517 -1.0431 9 6 2.7233 -4.7174 1.2689 10 6 3.5630 -5.8302 1.3037 11 7 3.7492 -6.4809 2.4372 12 6 3.1373 -6.0753 3.5436 13 7 3.3321 -6.7578 4.7320 14 6 2.5740 -6.3789 5.9270 15 6 4.2962 -7.8590 4.7946 16 6 2.2953 -4.9592 3.5083 17 7 2.1096 -4.3110 2.3797 18 6 1.4993 -2.1542 -1.2643 19 6 2.0399 -0.7208 -1.2500 20 1 3.1295 -0.7430 -1.2381 21 6 1.5578 0.0192 -2.4993 22 7 2.1408 -0.6028 -3.6908 23 6 1.8505 -0.1068 -4.9337 24 1 1.1921 0.7431 -5.0357 25 6 2.4034 -0.6958 -6.0625 26 7 3.2063 -1.7314 -5.9383 27 14 2.0080 -0.0189 -7.7580 28 1 2.4475 1.3972 -7.8404 29 1 2.7178 -0.8188 -8.7884 30 1 0.5437 -0.0972 -7.9932 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3633 0.5142 -0.8897 34 1 3.1293 -0.7431 1.2385 35 1 1.6954 -0.1934 2.1399 36 1 0.4088 -2.1375 1.3630 37 1 1.9293 -2.7063 2.0991 38 1 4.0615 -6.1590 0.4039 39 1 1.5075 -6.4902 5.7312 40 1 2.8603 -7.0233 6.7583 41 1 2.7906 -5.3413 6.1807 42 1 5.2761 -7.4688 5.0698 43 1 3.9714 -8.5843 5.5407 44 1 4.3586 -8.3433 3.8201 45 1 1.8014 -4.6270 4.4094 46 1 1.9380 -2.7018 -2.0983 47 1 0.4143 -2.1345 -1.3674 48 1 0.4706 -0.0346 -2.5567 49 1 1.8676 1.0628 -2.4458 50 1 2.7325 -1.3660 -3.5991 51 1 3.5929 -2.1428 -6.7271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132819437.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:30:00 Heat of formation + Delta-G solvation = 58.146212 kcal Electronic energy + Delta-G solvation = -31147.584414 eV Core-core repulsion = 27083.551794 eV Total energy + Delta-G solvation = -4064.032620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.57990 -39.93163 -38.02954 -37.24686 -35.05436 -34.33346 -33.23745 -31.76103 -31.17184 -29.64806 -28.94456 -27.64243 -26.74488 -25.39349 -24.54999 -24.42045 -23.01659 -22.64506 -21.04941 -20.36561 -18.47245 -18.14101 -17.78299 -16.99816 -16.75616 -16.18863 -15.86953 -15.34296 -15.16721 -15.03683 -14.89094 -14.76420 -14.28373 -14.15150 -14.05144 -13.42644 -13.29340 -13.19554 -13.07493 -12.97718 -12.84686 -12.70693 -12.55037 -12.38725 -12.19402 -11.66176 -11.53385 -11.17167 -11.05101 -10.88975 -10.72466 -10.67759 -10.40729 -10.38278 -10.17713 -10.07823 -10.03658 -9.85576 -9.51360 -8.91555 -8.75784 -8.33976 -8.09493 -6.79449 -5.63242 -2.92641 0.44083 0.83200 2.25860 2.81392 3.15364 3.51795 3.55516 3.57337 3.67507 3.88712 3.97215 4.07597 4.46664 4.65665 4.68665 4.72472 4.75943 4.93957 5.00421 5.04658 5.07955 5.09012 5.10390 5.21761 5.36765 5.39451 5.51940 5.67427 5.69298 5.74222 5.80750 5.82291 5.96265 6.06793 6.12661 6.15303 6.18641 6.23167 6.31614 6.46691 6.48612 6.51842 6.57515 6.70518 6.85121 6.90958 7.01962 7.04979 7.47715 7.69139 7.79841 8.35749 8.54627 9.65286 10.24455 10.58847 11.59011 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017460 B = 0.002391 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.279791 B =11705.480020 C =13072.213409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.129 4.129 5 C 0.076 3.924 6 N -0.590 5.590 7 C 0.574 3.426 8 O -0.527 6.527 9 C -0.038 4.038 10 C 0.172 3.828 11 N -0.506 5.506 12 C 0.368 3.632 13 N -0.601 5.601 14 C 0.090 3.910 15 C 0.092 3.908 16 C -0.013 4.013 17 N -0.365 5.365 18 C 0.119 3.881 19 C -0.101 4.101 20 H 0.073 0.927 21 C 0.161 3.839 22 N -0.733 5.733 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.014 4.014 26 N -0.930 5.930 27 Si 0.906 3.094 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.137 0.863 38 H 0.184 0.816 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.170 0.830 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.023 0.977 49 H 0.020 0.980 50 H 0.385 0.615 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -8.683 30.681 31.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.168 4.168 5 C -0.047 4.047 6 N -0.321 5.321 7 C 0.360 3.640 8 O -0.403 6.403 9 C -0.179 4.179 10 C 0.011 3.989 11 N -0.228 5.228 12 C 0.129 3.871 13 N -0.313 5.313 14 C -0.053 4.053 15 C -0.051 4.051 16 C -0.184 4.184 17 N -0.081 5.081 18 C -0.003 4.003 19 C -0.120 4.120 20 H 0.091 0.909 21 C 0.033 3.967 22 N -0.378 5.378 23 C -0.372 4.372 24 H 0.087 0.913 25 C -0.210 4.210 26 N -0.578 5.578 27 Si 0.737 3.263 28 H -0.214 1.214 29 H -0.217 1.217 30 H -0.214 1.214 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.154 0.846 38 H 0.201 0.799 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.187 0.813 46 H 0.120 0.880 47 H 0.087 0.913 48 H 0.040 0.960 49 H 0.037 0.963 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.093 -8.957 30.107 31.481 hybrid contribution -0.031 0.244 -0.835 0.870 sum -2.124 -8.713 29.272 30.615 Atomic orbital electron populations 1.21973 0.95348 1.01974 1.01541 1.21083 0.95944 0.99204 0.94236 0.91180 1.22056 1.00765 0.95988 0.97943 1.22971 1.00597 0.93318 0.87800 1.47951 1.55772 1.20099 1.08307 1.17541 0.78601 0.81183 0.86673 1.90871 1.49864 1.67805 1.31774 1.21843 1.02519 0.99678 0.93817 1.23547 0.91126 0.88766 0.95510 1.68125 1.25518 1.31085 0.98060 1.19588 0.90690 0.89583 0.87249 1.46210 1.43240 1.35051 1.06823 1.21841 0.96025 1.01498 0.85949 1.21745 0.91346 0.88256 1.03771 1.23309 1.02127 0.94708 0.98241 1.68189 1.17277 1.24442 0.98194 1.21794 0.99789 0.93088 0.85608 1.21663 1.00831 0.94412 0.95110 0.90900 1.20681 0.95942 0.94683 0.85435 1.42424 1.57050 1.37503 1.00775 1.19155 1.23336 1.10828 0.83841 0.91346 1.24755 1.00146 0.98359 0.97754 1.69672 1.35509 1.24058 1.28559 0.86290 0.77588 0.77953 0.84458 1.21393 1.21749 1.21351 0.92397 0.93289 0.91962 0.92044 0.91274 0.91758 0.84644 0.79913 0.91760 0.89739 0.91730 0.92830 0.91305 0.89842 0.81340 0.87956 0.91336 0.95978 0.96258 0.78065 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.11 37.16 0.30 -1.58 16 2 C -0.09 -1.16 2.71 -90.58 -0.25 -1.41 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.13 -1.53 5.64 -26.39 -0.15 -1.68 16 5 C 0.08 0.94 5.45 -3.49 -0.02 0.92 16 6 N -0.59 -9.33 2.97 -173.62 -0.51 -9.85 16 7 C 0.57 9.75 7.65 -12.34 -0.09 9.65 16 8 O -0.53 -10.90 15.80 5.31 0.08 -10.82 16 9 C -0.04 -0.52 6.57 -82.88 -0.54 -1.07 16 10 C 0.17 2.18 10.76 -17.02 -0.18 1.99 16 11 N -0.51 -5.78 9.22 -11.95 -0.11 -5.89 16 12 C 0.37 3.46 7.37 -154.99 -1.14 2.31 16 13 N -0.60 -3.87 3.37 -189.51 -0.64 -4.51 16 14 C 0.09 0.25 9.41 59.85 0.56 0.81 16 15 C 0.09 0.49 10.47 59.85 0.63 1.11 16 16 C -0.01 -0.11 10.49 -17.10 -0.18 -0.29 16 17 N -0.36 -4.16 6.27 -9.44 -0.06 -4.22 16 18 C 0.12 2.14 5.06 -3.71 -0.02 2.12 16 19 C -0.10 -1.76 2.15 -90.50 -0.19 -1.95 16 20 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 21 C 0.16 3.36 5.19 -4.04 -0.02 3.33 16 22 N -0.73 -19.47 5.38 -59.91 -0.32 -19.79 16 23 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 24 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 25 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 26 N -0.93 -29.52 13.06 55.49 0.72 -28.80 16 27 Si 0.91 23.25 29.55 -169.99 -5.02 18.23 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 30 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 31 H 0.06 0.74 4.96 -51.93 -0.26 0.48 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.76 6.68 -51.93 -0.35 0.41 16 37 H 0.14 1.59 3.99 -84.96 -0.34 1.25 16 38 H 0.18 2.23 7.66 -52.49 -0.40 1.83 16 39 H 0.06 0.15 8.11 -51.93 -0.42 -0.27 16 40 H 0.08 0.08 7.79 -51.93 -0.40 -0.32 16 41 H 0.06 0.13 7.73 -51.93 -0.40 -0.27 16 42 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.21 7.92 -51.93 -0.41 -0.20 16 44 H 0.08 0.58 7.30 -51.93 -0.38 0.20 16 45 H 0.17 0.89 6.71 -52.49 -0.35 0.54 16 46 H 0.10 2.26 6.20 -51.93 -0.32 1.94 16 47 H 0.07 1.19 6.69 -51.92 -0.35 0.85 16 48 H 0.02 0.46 6.73 -51.93 -0.35 0.11 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.39 10.97 6.89 -40.82 -0.28 10.68 16 51 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -35.77 394.55 -9.32 -45.09 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.86 Total: 7.98 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -1.55 Total: 6.63 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -0.92 Total: -73.05 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.77 -9.32 -45.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132819437.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.236 kcal (2) G-P(sol) polarization free energy of solvation -35.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds