Wall clock time and date at job start Wed Apr 1 2020 06:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.45555 * 2 1 4 4 C 1.53039 * 109.45151 * 119.96543 * 2 1 3 5 5 C 1.53625 * 109.23865 * 58.52499 * 4 2 1 6 6 N 1.46926 * 108.54385 * 54.85885 * 5 4 2 7 7 C 1.34778 * 120.63210 * 126.36755 * 6 5 4 8 8 O 1.21562 * 120.00238 * 187.40586 * 7 6 5 9 9 C 1.47823 * 119.99935 * 7.40225 * 7 6 5 10 10 C 1.39452 * 120.00095 * 189.45751 * 9 7 6 11 11 N 1.32026 * 119.97722 * 179.97438 * 10 9 7 12 12 C 1.32781 * 119.99156 * 359.97438 * 11 10 9 13 13 N 1.38413 * 119.99590 * 179.97438 * 12 11 10 14 14 C 1.46505 * 119.99934 * 185.00122 * 13 12 11 15 15 C 1.46499 * 119.99613 * 5.00237 * 13 12 11 16 16 C 1.39856 * 120.01157 * 0.02562 * 12 11 10 17 17 N 1.31474 * 120.01319 * 359.97438 * 16 12 11 18 18 C 1.46926 * 118.73887 * 306.09246 * 6 5 4 19 19 C 1.53039 * 109.46171 * 240.03197 * 2 1 3 20 20 H 1.08995 * 109.49761 * 181.40761 * 19 2 1 21 21 C 1.52994 * 109.52474 * 61.32109 * 19 2 1 22 22 N 1.46505 * 109.47136 * 175.14874 * 21 19 2 23 23 C 1.36933 * 119.99943 * 180.02562 * 22 21 19 24 24 H 1.07999 * 120.00385 * 0.02562 * 23 22 21 25 25 C 1.38814 * 119.99942 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99971 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00422 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47048 * 59.99374 * 27 25 23 29 29 H 1.48498 * 109.47488 * 180.02562 * 27 25 23 30 30 H 1.48509 * 109.46914 * 300.00114 * 27 25 23 31 31 H 1.09003 * 109.46878 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47078 * 299.96886 * 1 2 3 33 33 H 1.08997 * 109.47231 * 59.97241 * 1 2 3 34 34 H 1.08995 * 109.49910 * 178.59771 * 4 2 1 35 35 H 1.09006 * 109.49926 * 298.70317 * 4 2 1 36 36 H 1.08993 * 109.74554 * 295.11931 * 5 4 2 37 37 H 1.09008 * 109.66129 * 174.54903 * 5 4 2 38 38 H 1.07992 * 120.00993 * 0.02562 * 10 9 7 39 39 H 1.09000 * 109.47299 * 60.00336 * 14 13 12 40 40 H 1.09004 * 109.46466 * 180.02562 * 14 13 12 41 41 H 1.08996 * 109.46759 * 299.99871 * 14 13 12 42 42 H 1.08997 * 109.47195 * 90.00070 * 15 13 12 43 43 H 1.09000 * 109.46758 * 209.99720 * 15 13 12 44 44 H 1.08998 * 109.47551 * 329.99719 * 15 13 12 45 45 H 1.07992 * 119.99008 * 180.27991 * 16 12 11 46 46 H 1.08991 * 109.58830 * 173.64667 * 18 6 5 47 47 H 1.09007 * 109.58424 * 294.07477 * 18 6 5 48 48 H 1.09003 * 109.47560 * 295.14366 * 21 19 2 49 49 H 1.08999 * 109.47305 * 55.14841 * 21 19 2 50 50 H 0.97001 * 119.99625 * 0.02562 * 22 21 19 51 51 H 0.97005 * 119.99950 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0396 -0.7208 1.2501 5 6 1.4941 -2.1568 1.2643 6 7 1.8620 -2.8089 0.0001 7 6 2.5149 -3.9880 0.0002 8 8 2.9325 -4.4517 -1.0431 9 6 2.7233 -4.7174 1.2689 10 6 3.5630 -5.8302 1.3037 11 7 3.7492 -6.4809 2.4372 12 6 3.1373 -6.0753 3.5436 13 7 3.3321 -6.7578 4.7320 14 6 2.5740 -6.3789 5.9270 15 6 4.2962 -7.8590 4.7946 16 6 2.2953 -4.9592 3.5083 17 7 2.1096 -4.3110 2.3797 18 6 1.4993 -2.1542 -1.2643 19 6 2.0399 -0.7208 -1.2500 20 1 3.1295 -0.7430 -1.2381 21 6 1.5578 0.0192 -2.4993 22 7 2.1408 -0.6028 -3.6908 23 6 1.8505 -0.1068 -4.9337 24 1 1.1921 0.7431 -5.0357 25 6 2.4034 -0.6958 -6.0625 26 7 3.2063 -1.7314 -5.9383 27 14 2.0080 -0.0189 -7.7580 28 1 2.4475 1.3972 -7.8404 29 1 2.7178 -0.8188 -8.7884 30 1 0.5437 -0.0972 -7.9932 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3633 0.5142 -0.8897 34 1 3.1293 -0.7431 1.2385 35 1 1.6954 -0.1934 2.1399 36 1 0.4088 -2.1375 1.3630 37 1 1.9293 -2.7063 2.0991 38 1 4.0615 -6.1590 0.4039 39 1 1.5075 -6.4902 5.7312 40 1 2.8603 -7.0233 6.7583 41 1 2.7906 -5.3413 6.1807 42 1 5.2761 -7.4688 5.0698 43 1 3.9714 -8.5843 5.5407 44 1 4.3586 -8.3433 3.8201 45 1 1.8014 -4.6270 4.4094 46 1 1.9380 -2.7018 -2.0983 47 1 0.4143 -2.1345 -1.3674 48 1 0.4706 -0.0346 -2.5567 49 1 1.8676 1.0628 -2.4458 50 1 2.7325 -1.3660 -3.5991 51 1 3.5929 -2.1428 -6.7271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132819437.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:59 Heat of formation + Delta-G solvation = 33.588222 kcal Electronic energy + Delta-G solvation = -31148.649329 eV Core-core repulsion = 27083.551794 eV Total energy + Delta-G solvation = -4065.097534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.46743 -41.10882 -39.26432 -37.97104 -36.65051 -35.50189 -34.55644 -33.46997 -32.11920 -31.30238 -29.32291 -28.73970 -27.85526 -26.79341 -25.65550 -25.32943 -24.78216 -23.39799 -22.52886 -21.55419 -19.78024 -19.03145 -18.94284 -18.46016 -17.92143 -17.17498 -16.83129 -16.77144 -16.38340 -16.15844 -15.95100 -15.67471 -15.48911 -15.34069 -15.12491 -14.93155 -14.75116 -14.46530 -14.15047 -14.04338 -13.76537 -13.61342 -13.45255 -13.21862 -13.03168 -12.83174 -12.81370 -12.63221 -12.47918 -12.44150 -12.17497 -12.15441 -11.89466 -11.84151 -11.61197 -11.37308 -11.23678 -11.14243 -11.06352 -10.90295 -9.87171 -9.56684 -8.99553 -8.79032 -7.92857 -5.23665 -0.46435 0.02582 1.44851 1.49812 1.56012 1.68971 1.69334 1.97474 2.56308 2.72421 2.98256 3.19467 3.38673 3.39270 3.62079 3.77379 3.87675 3.91077 3.99974 4.16068 4.19651 4.25946 4.35468 4.45662 4.49442 4.51096 4.53956 4.58044 4.65664 4.76830 4.81639 4.83387 4.87065 4.91822 4.95340 4.97704 5.02834 5.12671 5.20012 5.25651 5.29722 5.34111 5.43791 5.49106 5.60683 5.66268 5.73349 5.92969 6.26266 6.27209 6.42953 6.73643 7.09529 7.32310 8.09143 8.31925 9.30519 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017460 B = 0.002391 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.279791 B =11705.480020 C =13072.213409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.122 4.122 5 C 0.074 3.926 6 N -0.589 5.589 7 C 0.567 3.433 8 O -0.584 6.584 9 C -0.066 4.066 10 C 0.169 3.831 11 N -0.525 5.525 12 C 0.368 3.632 13 N -0.590 5.590 14 C 0.077 3.923 15 C 0.086 3.914 16 C 0.008 3.992 17 N -0.368 5.368 18 C 0.128 3.872 19 C -0.089 4.089 20 H 0.046 0.954 21 C 0.161 3.839 22 N -0.748 5.748 23 C -0.246 4.246 24 H 0.080 0.920 25 C -0.082 4.082 26 N -0.973 5.973 27 Si 0.979 3.021 28 H -0.275 1.275 29 H -0.297 1.297 30 H -0.275 1.275 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.150 0.850 38 H 0.171 0.829 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.214 0.786 46 H 0.050 0.950 47 H 0.074 0.926 48 H 0.031 0.969 49 H 0.024 0.976 50 H 0.370 0.630 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 -7.628 35.159 36.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 H 0.097 0.903 4 C -0.160 4.160 5 C -0.047 4.047 6 N -0.319 5.319 7 C 0.355 3.645 8 O -0.465 6.465 9 C -0.204 4.204 10 C 0.008 3.992 11 N -0.248 5.248 12 C 0.125 3.875 13 N -0.300 5.300 14 C -0.064 4.064 15 C -0.057 4.057 16 C -0.167 4.167 17 N -0.083 5.083 18 C 0.006 3.994 19 C -0.108 4.108 20 H 0.065 0.935 21 C 0.034 3.966 22 N -0.391 5.391 23 C -0.378 4.378 24 H 0.098 0.902 25 C -0.274 4.274 26 N -0.623 5.623 27 Si 0.807 3.193 28 H -0.201 1.201 29 H -0.223 1.223 30 H -0.201 1.201 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.166 0.834 38 H 0.188 0.812 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.231 0.769 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.049 0.951 49 H 0.042 0.958 50 H 0.201 0.799 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.928 -7.855 34.652 35.747 hybrid contribution 0.519 -0.192 -1.896 1.975 sum -3.409 -8.047 32.756 33.902 Atomic orbital electron populations 1.21935 0.93908 1.01991 1.02529 1.21081 0.97032 0.99150 0.92643 0.90299 1.22053 1.00104 0.95550 0.98339 1.23266 1.01614 0.93564 0.86248 1.48050 1.55337 1.19897 1.08649 1.18116 0.77710 0.81283 0.87418 1.90824 1.52284 1.69205 1.34143 1.21161 1.05271 1.00656 0.93293 1.23333 0.91190 0.88819 0.95905 1.68140 1.26850 1.31462 0.98357 1.19989 0.90016 0.89860 0.87622 1.46664 1.42566 1.34053 1.06689 1.22234 0.96268 1.03085 0.84847 1.21880 0.91640 0.88513 1.03643 1.23988 1.00760 0.93494 0.98426 1.68025 1.17084 1.25052 0.98178 1.21445 0.99467 0.92954 0.85581 1.21524 0.99161 0.94231 0.95918 0.93500 1.20858 0.96015 0.94754 0.84959 1.42690 1.57080 1.37295 1.02018 1.19642 1.22550 1.10595 0.84969 0.90247 1.25699 1.00606 0.99008 1.02063 1.69880 1.37300 1.25922 1.29237 0.85133 0.77664 0.77459 0.79017 1.20066 1.22334 1.20125 0.92837 0.90080 0.93199 0.93170 0.87354 0.90269 0.83352 0.81230 0.90554 0.87430 0.90103 0.92360 0.88279 0.91869 0.76941 0.93108 0.90798 0.95072 0.95812 0.79855 0.94127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.11 71.98 0.58 -2.68 16 2 C -0.08 -2.05 2.71 -10.77 -0.03 -2.07 16 3 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.12 -2.59 5.64 30.82 0.17 -2.42 16 5 C 0.07 1.71 5.45 86.51 0.47 2.18 16 6 N -0.59 -19.47 2.97 -821.47 -2.44 -21.91 16 7 C 0.57 20.84 7.65 86.78 0.66 21.50 16 8 O -0.58 -27.09 15.80 -3.91 -0.06 -27.15 16 9 C -0.07 -1.89 6.57 41.76 0.27 -1.62 16 10 C 0.17 4.57 10.76 84.96 0.91 5.49 16 11 N -0.52 -12.01 9.22 -191.73 -1.77 -13.78 16 12 C 0.37 6.09 7.37 133.33 0.98 7.07 16 13 N -0.59 -5.56 3.37 -753.49 -2.54 -8.10 16 14 C 0.08 0.04 9.41 127.77 1.20 1.24 16 15 C 0.09 0.69 10.47 127.77 1.34 2.03 16 16 C 0.01 0.11 10.49 85.14 0.89 1.00 16 17 N -0.37 -7.81 6.27 -183.79 -1.15 -8.96 16 18 C 0.13 4.95 5.06 86.36 0.44 5.38 16 19 C -0.09 -3.21 2.15 -10.72 -0.02 -3.24 16 20 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 21 C 0.16 6.90 5.19 86.38 0.45 7.34 16 22 N -0.75 -41.69 5.38 -343.45 -1.85 -43.54 16 23 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 24 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 25 C -0.08 -5.04 5.50 84.86 0.47 -4.58 16 26 N -0.97 -64.72 13.06 21.65 0.28 -64.44 16 27 Si 0.98 48.89 29.55 68.60 2.03 50.92 16 28 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 29 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 30 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 31 H 0.05 1.24 4.96 -2.39 -0.01 1.23 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.23 6.58 -2.39 -0.02 1.22 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.08 1.63 6.68 -2.39 -0.02 1.61 16 37 H 0.15 3.14 3.99 -67.61 -0.27 2.87 16 38 H 0.17 4.82 7.66 -2.91 -0.02 4.80 16 39 H 0.08 -0.06 8.11 -2.39 -0.02 -0.08 16 40 H 0.11 -0.36 7.79 -2.39 -0.02 -0.38 16 41 H 0.08 -0.13 7.73 -2.39 -0.02 -0.15 16 42 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.10 0.23 7.92 -2.39 -0.02 0.21 16 44 H 0.06 0.81 7.30 -2.39 -0.02 0.79 16 45 H 0.21 1.04 6.71 -2.91 -0.02 1.02 16 46 H 0.05 2.49 6.20 -2.39 -0.01 2.48 16 47 H 0.07 2.71 6.69 -2.38 -0.02 2.69 16 48 H 0.03 1.30 6.73 -2.39 -0.02 1.29 16 49 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.37 22.67 6.89 -92.71 -0.64 22.03 16 51 H 0.25 16.12 8.31 -92.70 -0.77 15.35 16 Total: -1.00 -84.69 394.55 2.20 -82.49 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.06 Total: 31.65 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 9.64 Total: 22.82 kcal Atomic # 7 Polarization: -151.26 SS G_CDS: -9.46 Total: -160.72 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.06 Total: -27.15 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.03 Total: 50.92 kcal Total: -84.69 2.20 -82.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132819437.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.078 kcal (2) G-P(sol) polarization free energy of solvation -84.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds