Wall clock time and date at job start Wed Apr 1 2020 06:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.45717 * 2 1 4 4 C 1.53039 * 109.44434 * 119.96303 * 2 1 3 5 5 C 1.53615 * 109.24462 * 58.52803 * 4 2 1 6 6 N 1.46922 * 108.54455 * 54.85425 * 5 4 2 7 7 C 1.34773 * 120.63234 * 126.36864 * 6 5 4 8 8 O 1.21599 * 120.00191 * 173.68987 * 7 6 5 9 9 C 1.47520 * 120.00038 * 353.96152 * 7 6 5 10 10 C 1.36597 * 125.77098 * 172.85423 * 9 7 6 11 11 N 1.34815 * 106.84069 * 179.90237 * 10 9 7 12 12 C 1.46501 * 126.59949 * 180.09444 * 11 10 9 13 13 C 1.53789 * 113.61059 * 14.42470 * 12 11 10 14 14 C 1.53956 * 87.01534 * 220.04926 * 13 12 11 15 15 C 1.53781 * 113.61029 * 276.82136 * 12 11 10 16 16 N 1.40210 * 106.80995 * 0.35393 * 11 10 9 17 17 N 1.28763 * 108.36832 * 359.77514 * 16 11 10 18 18 C 1.46933 * 118.73854 * 306.09621 * 6 5 4 19 19 C 1.53031 * 109.46125 * 240.02456 * 2 1 3 20 20 H 1.09002 * 109.49960 * 181.40579 * 19 2 1 21 21 C 1.53006 * 109.52564 * 61.32726 * 19 2 1 22 22 N 1.46501 * 109.47116 * 175.14398 * 21 19 2 23 23 C 1.36929 * 119.99941 * 180.02562 * 22 21 19 24 24 H 1.07999 * 120.00335 * 0.02562 * 23 22 21 25 25 C 1.38815 * 120.00118 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00208 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99999 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47358 * 89.99256 * 27 25 23 29 29 H 1.48494 * 109.46898 * 209.99910 * 27 25 23 30 30 H 1.48502 * 109.46616 * 329.99279 * 27 25 23 31 31 H 1.08997 * 109.47154 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47333 * 299.97643 * 1 2 3 33 33 H 1.09007 * 109.46536 * 59.97867 * 1 2 3 34 34 H 1.09004 * 109.49419 * 178.60446 * 4 2 1 35 35 H 1.09004 * 109.49820 * 298.69343 * 4 2 1 36 36 H 1.09005 * 109.73985 * 295.11916 * 5 4 2 37 37 H 1.09000 * 109.66825 * 174.54822 * 5 4 2 38 38 H 1.07996 * 126.58122 * 0.03451 * 10 9 7 39 39 H 1.08999 * 112.85171 * 145.61835 * 12 11 10 40 40 H 1.09002 * 113.61228 * 334.56981 * 13 12 11 41 41 H 1.08997 * 113.61207 * 105.47313 * 13 12 11 42 42 H 1.09000 * 113.53567 * 270.81015 * 14 13 12 43 43 H 1.09000 * 113.66350 * 139.93319 * 14 13 12 44 44 H 1.09003 * 113.60916 * 254.52293 * 15 12 11 45 45 H 1.08995 * 113.61869 * 25.42986 * 15 12 11 46 46 H 1.09000 * 109.58724 * 173.64880 * 18 6 5 47 47 H 1.09001 * 109.58311 * 294.06998 * 18 6 5 48 48 H 1.08992 * 109.46878 * 295.14090 * 21 19 2 49 49 H 1.08998 * 109.46981 * 55.14425 * 21 19 2 50 50 H 0.97004 * 120.00201 * 359.97438 * 22 21 19 51 51 H 0.96998 * 120.00379 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7207 1.2502 5 6 1.4941 -2.1567 1.2644 6 7 1.8621 -2.8089 0.0004 7 6 2.5149 -3.9879 0.0006 8 8 2.7127 -4.5736 -1.0466 9 6 2.9844 -4.5709 1.2718 10 6 3.5316 -5.8128 1.4267 11 7 3.8238 -5.9503 2.7356 12 6 4.4300 -7.1197 3.3771 13 6 5.0551 -8.1127 2.3830 14 6 4.4825 -9.2349 3.2680 15 6 3.4184 -8.2239 3.7268 16 7 3.4305 -4.7613 3.3660 17 7 2.9408 -3.9721 2.4742 18 6 1.4995 -2.1542 -1.2641 19 6 2.0399 -0.7209 -1.2499 20 1 3.1297 -0.7432 -1.2380 21 6 1.5579 0.0190 -2.4994 22 7 2.1411 -0.6031 -3.6907 23 6 1.8509 -0.1072 -4.9336 24 1 1.1925 0.7428 -5.0357 25 6 2.4039 -0.6963 -6.0624 26 7 2.1245 -0.2200 -7.2572 27 14 3.5433 -2.1660 -5.8859 28 1 2.7461 -3.4182 -5.9271 29 1 4.5254 -2.1674 -6.9996 30 1 4.2642 -2.0805 -4.5904 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5134 0.8901 33 1 -0.3633 0.5142 -0.8899 34 1 3.1293 -0.7430 1.2386 35 1 1.6955 -0.1932 2.1399 36 1 0.4087 -2.1373 1.3631 37 1 1.9292 -2.7062 2.0992 38 1 3.7000 -6.5435 0.6495 39 1 5.0902 -6.8547 4.2030 40 1 4.6116 -8.0720 1.3881 41 1 6.1445 -8.0836 2.3635 42 1 5.1580 -9.5492 4.0636 43 1 4.0740 -10.0725 2.7027 44 1 3.1886 -8.2844 4.7906 45 1 2.5268 -8.2137 3.1000 46 1 1.9381 -2.7020 -2.0981 47 1 0.4145 -2.1346 -1.3673 48 1 0.4708 -0.0347 -2.5567 49 1 1.8679 1.0626 -2.4458 50 1 2.7334 -1.3658 -3.5990 51 1 2.5106 -0.6318 -8.0460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132838338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:30:14 Heat of formation + Delta-G solvation = 110.890163 kcal Electronic energy + Delta-G solvation = -31288.063245 eV Core-core repulsion = 27226.317775 eV Total energy + Delta-G solvation = -4061.745471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.64830 -40.19990 -39.36015 -37.97873 -35.07952 -33.81716 -33.18859 -31.86171 -31.21881 -30.07887 -27.66914 -26.91534 -26.56453 -25.71905 -24.89797 -23.05372 -22.89518 -22.62093 -21.00272 -20.33564 -20.18427 -18.66983 -17.75214 -17.40554 -16.69994 -16.56733 -16.09415 -15.92957 -15.24068 -15.09340 -14.81601 -14.76702 -14.26078 -13.97326 -13.69218 -13.64980 -13.41100 -13.26200 -13.19766 -12.86315 -12.67391 -12.60981 -12.57022 -12.38975 -11.94619 -11.63944 -11.58143 -11.45784 -11.31989 -11.12386 -11.06769 -10.78549 -10.73476 -10.61693 -10.44260 -10.21531 -10.08710 -10.01356 -9.65775 -9.53585 -9.47349 -8.79974 -8.41447 -7.13351 -5.68540 -3.03368 0.83260 1.48736 1.63946 2.99441 3.22431 3.43431 3.48815 3.53785 3.56394 3.64236 3.92060 3.94359 3.98739 4.30998 4.55441 4.67305 4.69267 4.80589 4.84504 4.88406 4.98696 4.99701 4.99862 5.11424 5.13826 5.17906 5.22741 5.27222 5.41604 5.52766 5.56498 5.62581 5.66070 5.76785 5.79045 5.89682 5.96760 6.03110 6.04718 6.14114 6.21987 6.31346 6.38678 6.40829 6.53151 6.69514 6.77496 6.88700 7.43617 7.69182 8.07814 8.18163 8.50627 9.30173 10.03163 10.22941 11.49849 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.002829 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.508868 B = 9893.671886 C =11807.228422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.122 4.122 5 C 0.069 3.931 6 N -0.592 5.592 7 C 0.597 3.403 8 O -0.537 6.537 9 C -0.090 4.090 10 C 0.092 3.908 11 N -0.348 5.348 12 C 0.121 3.879 13 C -0.148 4.148 14 C -0.135 4.135 15 C -0.145 4.145 16 N -0.068 5.068 17 N -0.205 5.205 18 C 0.119 3.881 19 C -0.106 4.106 20 H 0.072 0.928 21 C 0.165 3.835 22 N -0.757 5.757 23 C -0.241 4.241 24 H 0.090 0.910 25 C 0.004 3.996 26 N -0.936 5.936 27 Si 0.881 3.119 28 H -0.282 1.282 29 H -0.292 1.292 30 H -0.277 1.277 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.137 0.863 38 H 0.203 0.797 39 H 0.135 0.865 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.032 0.968 49 H 0.029 0.971 50 H 0.361 0.639 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 -16.225 28.746 33.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.161 4.161 5 C -0.055 4.055 6 N -0.323 5.323 7 C 0.383 3.617 8 O -0.413 6.413 9 C -0.229 4.229 10 C -0.065 4.065 11 N -0.133 5.133 12 C 0.020 3.980 13 C -0.187 4.187 14 C -0.173 4.173 15 C -0.184 4.184 16 N -0.047 5.047 17 N -0.077 5.077 18 C -0.003 4.003 19 C -0.125 4.125 20 H 0.091 0.909 21 C 0.037 3.963 22 N -0.403 5.403 23 C -0.371 4.371 24 H 0.108 0.892 25 C -0.191 4.191 26 N -0.584 5.584 27 Si 0.712 3.288 28 H -0.209 1.209 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.153 0.847 38 H 0.219 0.781 39 H 0.152 0.848 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.092 0.908 48 H 0.050 0.950 49 H 0.047 0.953 50 H 0.194 0.806 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.022 -15.662 29.364 33.416 hybrid contribution 0.985 -1.480 -0.882 1.984 sum 4.007 -17.142 28.482 33.483 Atomic orbital electron populations 1.21991 0.95196 1.01986 1.01828 1.21085 0.96073 0.99356 0.93938 0.90815 1.21937 1.00956 0.95225 0.97952 1.22879 1.00379 0.94687 0.87510 1.47925 1.55612 1.20266 1.08487 1.16845 0.77996 0.81034 0.85842 1.90842 1.58123 1.60751 1.31580 1.21521 1.12689 0.94745 0.93934 1.23234 0.96876 0.98772 0.87573 1.50526 1.42001 1.14508 1.06264 1.23478 0.96746 0.79784 0.98029 1.23526 1.02389 0.93976 0.98776 1.22747 0.98016 0.96782 0.99795 1.23450 0.97828 0.93605 1.03471 1.81989 1.16488 0.88787 1.17401 1.74147 1.11924 1.22670 0.99001 1.21795 1.00396 0.92875 0.85219 1.21740 1.00824 0.94369 0.95602 0.90918 1.20673 0.96407 0.94935 0.84272 1.42788 1.57474 1.37433 1.02598 1.19047 1.24082 1.12139 0.81857 0.89227 1.24651 1.00261 0.99088 0.95123 1.69705 1.48519 1.43193 0.96984 0.86585 0.81369 0.83981 0.76900 1.20858 1.21824 1.20282 0.92461 0.93065 0.91777 0.91746 0.90963 0.91724 0.84658 0.78074 0.84762 0.88447 0.89205 0.88961 0.89653 0.89565 0.88939 0.88705 0.90774 0.94993 0.95266 0.80567 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.11 37.16 0.30 -1.52 16 2 C -0.09 -1.11 2.71 -90.58 -0.25 -1.35 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.12 -1.43 5.64 -26.39 -0.15 -1.58 16 5 C 0.07 0.85 5.88 -3.49 -0.02 0.83 16 6 N -0.59 -8.88 2.97 -173.74 -0.52 -9.40 16 7 C 0.60 9.49 7.68 -12.48 -0.10 9.40 16 8 O -0.54 -10.17 16.31 5.28 0.09 -10.08 16 9 C -0.09 -1.17 6.74 -83.55 -0.56 -1.73 16 10 C 0.09 0.91 10.50 -16.83 -0.18 0.73 16 11 N -0.35 -3.00 3.83 -53.77 -0.21 -3.20 16 12 C 0.12 0.58 5.05 -67.11 -0.34 0.24 16 13 C -0.15 -0.47 7.47 -25.82 -0.19 -0.66 16 14 C -0.14 -0.29 8.09 -25.83 -0.21 -0.50 16 15 C -0.14 -0.52 7.88 -25.92 -0.20 -0.72 16 16 N -0.07 -0.78 13.78 60.35 0.83 0.05 16 17 N -0.20 -2.59 8.71 32.85 0.29 -2.30 16 18 C 0.12 1.99 5.03 -3.71 -0.02 1.97 16 19 C -0.11 -1.73 2.15 -90.50 -0.19 -1.93 16 20 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 21 C 0.16 3.26 5.19 -4.04 -0.02 3.24 16 22 N -0.76 -18.81 5.18 -59.91 -0.31 -19.12 16 23 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 24 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 25 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 26 N -0.94 -30.27 13.97 55.49 0.78 -29.50 16 27 Si 0.88 23.48 27.74 -169.99 -4.71 18.76 16 28 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.29 -7.78 7.11 56.52 0.40 -7.37 16 30 H -0.28 -7.11 6.52 56.52 0.37 -6.74 16 31 H 0.06 0.69 4.96 -51.93 -0.26 0.43 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.82 6.58 -51.92 -0.34 0.48 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.74 6.69 -51.93 -0.35 0.39 16 37 H 0.14 1.67 3.66 -121.55 -0.44 1.22 16 38 H 0.20 1.50 6.79 -52.49 -0.36 1.14 16 39 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.33 6.39 -51.93 -0.33 0.00 16 41 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 43 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 1.89 6.24 -51.93 -0.32 1.57 16 47 H 0.07 1.20 6.69 -51.93 -0.35 0.85 16 48 H 0.03 0.63 6.73 -51.93 -0.35 0.28 16 49 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.36 9.02 4.75 -40.82 -0.19 8.82 16 51 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -36.08 390.86 -8.22 -44.29 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.96 Total: 5.38 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.38 Total: -0.78 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.86 Total: -63.46 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.71 Total: 18.76 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.08 -8.22 -44.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132838338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.185 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds