Wall clock time and date at job start Wed Apr 1 2020 06:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.45717 * 2 1 4 4 C 1.53039 * 109.44434 * 119.96303 * 2 1 3 5 5 C 1.53615 * 109.24462 * 58.52803 * 4 2 1 6 6 N 1.46922 * 108.54455 * 54.85425 * 5 4 2 7 7 C 1.34773 * 120.63234 * 126.36864 * 6 5 4 8 8 O 1.21599 * 120.00191 * 173.68987 * 7 6 5 9 9 C 1.47520 * 120.00038 * 353.96152 * 7 6 5 10 10 C 1.36597 * 125.77098 * 172.85423 * 9 7 6 11 11 N 1.34815 * 106.84069 * 179.90237 * 10 9 7 12 12 C 1.46501 * 126.59949 * 180.09444 * 11 10 9 13 13 C 1.53789 * 113.61059 * 14.42470 * 12 11 10 14 14 C 1.53956 * 87.01534 * 220.04926 * 13 12 11 15 15 C 1.53781 * 113.61029 * 276.82136 * 12 11 10 16 16 N 1.40210 * 106.80995 * 0.35393 * 11 10 9 17 17 N 1.28763 * 108.36832 * 359.77514 * 16 11 10 18 18 C 1.46933 * 118.73854 * 306.09621 * 6 5 4 19 19 C 1.53031 * 109.46125 * 240.02456 * 2 1 3 20 20 H 1.09002 * 109.49960 * 181.40579 * 19 2 1 21 21 C 1.53006 * 109.52564 * 61.32726 * 19 2 1 22 22 N 1.46501 * 109.47116 * 175.14398 * 21 19 2 23 23 C 1.36929 * 119.99941 * 180.02562 * 22 21 19 24 24 H 1.07999 * 120.00335 * 0.02562 * 23 22 21 25 25 C 1.38815 * 120.00118 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00208 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99999 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47358 * 89.99256 * 27 25 23 29 29 H 1.48494 * 109.46898 * 209.99910 * 27 25 23 30 30 H 1.48502 * 109.46616 * 329.99279 * 27 25 23 31 31 H 1.08997 * 109.47154 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47333 * 299.97643 * 1 2 3 33 33 H 1.09007 * 109.46536 * 59.97867 * 1 2 3 34 34 H 1.09004 * 109.49419 * 178.60446 * 4 2 1 35 35 H 1.09004 * 109.49820 * 298.69343 * 4 2 1 36 36 H 1.09005 * 109.73985 * 295.11916 * 5 4 2 37 37 H 1.09000 * 109.66825 * 174.54822 * 5 4 2 38 38 H 1.07996 * 126.58122 * 0.03451 * 10 9 7 39 39 H 1.08999 * 112.85171 * 145.61835 * 12 11 10 40 40 H 1.09002 * 113.61228 * 334.56981 * 13 12 11 41 41 H 1.08997 * 113.61207 * 105.47313 * 13 12 11 42 42 H 1.09000 * 113.53567 * 270.81015 * 14 13 12 43 43 H 1.09000 * 113.66350 * 139.93319 * 14 13 12 44 44 H 1.09003 * 113.60916 * 254.52293 * 15 12 11 45 45 H 1.08995 * 113.61869 * 25.42986 * 15 12 11 46 46 H 1.09000 * 109.58724 * 173.64880 * 18 6 5 47 47 H 1.09001 * 109.58311 * 294.06998 * 18 6 5 48 48 H 1.08992 * 109.46878 * 295.14090 * 21 19 2 49 49 H 1.08998 * 109.46981 * 55.14425 * 21 19 2 50 50 H 0.97004 * 120.00201 * 359.97438 * 22 21 19 51 51 H 0.96998 * 120.00379 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7207 1.2502 5 6 1.4941 -2.1567 1.2644 6 7 1.8621 -2.8089 0.0004 7 6 2.5149 -3.9879 0.0006 8 8 2.7127 -4.5736 -1.0466 9 6 2.9844 -4.5709 1.2718 10 6 3.5316 -5.8128 1.4267 11 7 3.8238 -5.9503 2.7356 12 6 4.4300 -7.1197 3.3771 13 6 5.0551 -8.1127 2.3830 14 6 4.4825 -9.2349 3.2680 15 6 3.4184 -8.2239 3.7268 16 7 3.4305 -4.7613 3.3660 17 7 2.9408 -3.9721 2.4742 18 6 1.4995 -2.1542 -1.2641 19 6 2.0399 -0.7209 -1.2499 20 1 3.1297 -0.7432 -1.2380 21 6 1.5579 0.0190 -2.4994 22 7 2.1411 -0.6031 -3.6907 23 6 1.8509 -0.1072 -4.9336 24 1 1.1925 0.7428 -5.0357 25 6 2.4039 -0.6963 -6.0624 26 7 2.1245 -0.2200 -7.2572 27 14 3.5433 -2.1660 -5.8859 28 1 2.7461 -3.4182 -5.9271 29 1 4.5254 -2.1674 -6.9996 30 1 4.2642 -2.0805 -4.5904 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5134 0.8901 33 1 -0.3633 0.5142 -0.8899 34 1 3.1293 -0.7430 1.2386 35 1 1.6955 -0.1932 2.1399 36 1 0.4087 -2.1373 1.3631 37 1 1.9292 -2.7062 2.0992 38 1 3.7000 -6.5435 0.6495 39 1 5.0902 -6.8547 4.2030 40 1 4.6116 -8.0720 1.3881 41 1 6.1445 -8.0836 2.3635 42 1 5.1580 -9.5492 4.0636 43 1 4.0740 -10.0725 2.7027 44 1 3.1886 -8.2844 4.7906 45 1 2.5268 -8.2137 3.1000 46 1 1.9381 -2.7020 -2.0981 47 1 0.4145 -2.1346 -1.3673 48 1 0.4708 -0.0347 -2.5567 49 1 1.8679 1.0626 -2.4458 50 1 2.7334 -1.3658 -3.5990 51 1 2.5106 -0.6318 -8.0460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132838338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:30:13 Heat of formation + Delta-G solvation = 86.754014 kcal Electronic energy + Delta-G solvation = -31289.109867 eV Core-core repulsion = 27226.317775 eV Total energy + Delta-G solvation = -4062.792093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.46439 -41.33017 -39.79478 -39.21873 -36.79610 -35.07461 -34.08672 -33.65844 -32.31291 -31.60273 -28.76508 -27.91568 -26.85162 -26.80592 -26.04867 -24.59933 -23.95506 -23.41394 -22.53732 -21.40665 -20.59347 -19.99895 -19.21013 -18.65520 -17.72244 -17.22407 -17.17114 -16.77450 -16.46039 -16.26165 -16.10705 -15.93591 -15.72037 -15.25435 -15.02487 -14.64038 -14.55798 -14.24986 -14.13788 -13.86740 -13.79730 -13.67279 -13.46307 -13.32921 -13.29571 -12.98679 -12.67231 -12.57054 -12.43577 -12.19505 -12.11647 -11.94151 -11.86303 -11.82845 -11.65443 -11.53479 -11.40276 -11.28679 -11.17492 -10.98971 -10.73202 -10.42755 -9.59702 -9.29749 -8.05014 -5.36865 0.04997 0.49308 0.98926 1.34414 1.37757 1.42955 1.87702 2.11092 2.44752 2.97007 3.08346 3.26841 3.35829 3.46150 3.53719 3.70351 3.74096 3.82461 3.83799 3.84935 3.98153 4.08994 4.10120 4.22847 4.31022 4.44306 4.50048 4.53651 4.60256 4.64043 4.71548 4.77277 4.78689 4.86403 4.89366 4.91662 4.94726 5.04189 5.07567 5.16807 5.21578 5.24578 5.25308 5.29600 5.40848 5.47067 5.56140 5.67205 5.74757 6.19828 6.29438 6.77476 7.03001 7.05518 7.82852 8.00202 9.16577 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.002829 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.508868 B = 9893.671886 C =11807.228422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.082 0.918 4 C -0.115 4.115 5 C 0.067 3.933 6 N -0.591 5.591 7 C 0.593 3.407 8 O -0.578 6.578 9 C -0.115 4.115 10 C 0.105 3.895 11 N -0.332 5.332 12 C 0.106 3.894 13 C -0.147 4.147 14 C -0.124 4.124 15 C -0.144 4.144 16 N -0.081 5.081 17 N -0.214 5.214 18 C 0.124 3.876 19 C -0.094 4.094 20 H 0.058 0.942 21 C 0.163 3.837 22 N -0.761 5.761 23 C -0.229 4.229 24 H 0.064 0.936 25 C -0.058 4.058 26 N -0.980 5.980 27 Si 0.946 3.054 28 H -0.281 1.281 29 H -0.289 1.289 30 H -0.265 1.265 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.224 0.776 39 H 0.149 0.851 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.079 0.921 48 H 0.037 0.963 49 H 0.031 0.969 50 H 0.361 0.639 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 -17.767 32.012 36.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 H 0.100 0.900 4 C -0.153 4.153 5 C -0.055 4.055 6 N -0.321 5.321 7 C 0.380 3.620 8 O -0.457 6.457 9 C -0.254 4.254 10 C -0.052 4.052 11 N -0.117 5.117 12 C 0.006 3.994 13 C -0.185 4.185 14 C -0.162 4.162 15 C -0.182 4.182 16 N -0.060 5.060 17 N -0.086 5.086 18 C 0.001 3.999 19 C -0.113 4.113 20 H 0.077 0.923 21 C 0.037 3.963 22 N -0.407 5.407 23 C -0.360 4.360 24 H 0.082 0.918 25 C -0.250 4.250 26 N -0.631 5.631 27 Si 0.774 3.226 28 H -0.208 1.208 29 H -0.216 1.216 30 H -0.190 1.190 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.158 0.842 38 H 0.240 0.760 39 H 0.167 0.833 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.126 0.874 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.055 0.945 49 H 0.049 0.951 50 H 0.194 0.806 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.749 -17.196 32.729 37.161 hybrid contribution 0.718 -1.009 -1.792 2.178 sum 4.467 -18.204 30.936 36.172 Atomic orbital electron populations 1.21962 0.94112 1.02063 1.02532 1.21075 0.96887 0.99369 0.92559 0.90001 1.21908 1.00380 0.94755 0.98272 1.23078 1.01272 0.94927 0.86218 1.47993 1.55288 1.20194 1.08675 1.17236 0.77456 0.80911 0.86422 1.90805 1.59789 1.61893 1.33219 1.21243 1.14957 0.96112 0.93104 1.23521 0.95220 0.98040 0.88447 1.50823 1.40618 1.14480 1.05778 1.24072 0.97595 0.78698 0.99037 1.23581 1.02970 0.93530 0.98449 1.22742 0.97381 0.96202 0.99843 1.23455 0.97560 0.93442 1.03782 1.81903 1.16839 0.89759 1.17482 1.74067 1.12470 1.23285 0.98825 1.21563 1.00332 0.92686 0.85304 1.21602 0.99866 0.94216 0.95666 0.92327 1.20853 0.96433 0.95057 0.83994 1.42860 1.57648 1.37533 1.02634 1.19068 1.22441 1.10768 0.83711 0.91840 1.25365 1.02522 1.02223 0.94874 1.69853 1.50383 1.45078 0.97797 0.85549 0.79432 0.80374 0.77264 1.20787 1.21574 1.18992 0.92678 0.90473 0.92998 0.92650 0.87966 0.90394 0.84207 0.75966 0.83324 0.88690 0.88223 0.87420 0.89202 0.88842 0.90010 0.92177 0.90276 0.94457 0.95149 0.80577 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.11 71.99 0.58 -2.63 16 2 C -0.08 -1.91 2.71 -10.77 -0.03 -1.94 16 3 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.12 -2.40 5.64 30.81 0.17 -2.22 16 5 C 0.07 1.53 5.88 86.51 0.51 2.04 16 6 N -0.59 -17.52 2.97 -821.84 -2.44 -19.96 16 7 C 0.59 18.89 7.68 86.69 0.67 19.56 16 8 O -0.58 -22.33 16.31 -4.03 -0.07 -22.39 16 9 C -0.11 -2.91 6.74 40.82 0.28 -2.63 16 10 C 0.11 1.95 10.50 83.85 0.88 2.83 16 11 N -0.33 -5.14 3.83 -324.03 -1.24 -6.38 16 12 C 0.11 0.76 5.05 45.52 0.23 0.99 16 13 C -0.15 -0.56 7.47 31.18 0.23 -0.32 16 14 C -0.12 -0.18 8.09 31.18 0.25 0.07 16 15 C -0.14 -0.70 7.88 31.12 0.25 -0.46 16 16 N -0.08 -1.73 13.78 37.02 0.51 -1.22 16 17 N -0.21 -5.15 8.71 -50.00 -0.44 -5.59 16 18 C 0.12 4.17 5.03 86.36 0.43 4.60 16 19 C -0.09 -3.03 2.15 -10.72 -0.02 -3.05 16 20 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 21 C 0.16 6.44 5.19 86.38 0.45 6.89 16 22 N -0.76 -38.18 5.18 -343.45 -1.78 -39.96 16 23 C -0.23 -13.68 10.47 84.04 0.88 -12.80 16 24 H 0.06 4.07 8.06 -2.91 -0.02 4.04 16 25 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 26 N -0.98 -64.91 13.97 21.65 0.30 -64.61 16 27 Si 0.95 49.43 27.74 68.60 1.90 51.34 16 28 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 29 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 30 H -0.26 -13.14 6.52 99.48 0.65 -12.49 16 31 H 0.05 1.21 4.96 -2.39 -0.01 1.20 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.24 6.58 -2.38 -0.02 1.23 16 34 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.08 1.59 6.69 -2.38 -0.02 1.57 16 37 H 0.14 3.22 3.66 -92.48 -0.34 2.88 16 38 H 0.22 2.99 6.79 -2.91 -0.02 2.97 16 39 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 0.43 6.39 -2.39 -0.02 0.42 16 41 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.06 2.46 6.24 -2.39 -0.01 2.44 16 47 H 0.08 2.54 6.69 -2.39 -0.02 2.53 16 48 H 0.04 1.46 6.73 -2.39 -0.02 1.45 16 49 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 50 H 0.36 18.13 4.75 -92.71 -0.44 17.68 16 51 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -79.90 390.86 3.11 -76.79 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.13 Total: 24.20 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.23 Total: 7.79 kcal Atomic # 7 Polarization: -132.64 SS G_CDS: -5.08 Total: -137.72 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.07 Total: -22.39 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 1.90 Total: 51.34 kcal Total: -79.90 3.11 -76.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132838338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.544 kcal (2) G-P(sol) polarization free energy of solvation -79.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds