Wall clock time and date at job start Wed Apr 1 2020 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50692 * 120.00034 * 2 1 4 4 C 1.52998 * 109.47406 * 125.00153 * 3 2 1 5 5 N 1.46496 * 109.47333 * 179.97438 * 4 3 2 6 6 C 1.34813 * 126.59697 * 124.99579 * 5 4 3 7 7 C 1.36593 * 106.84116 * 180.02562 * 6 5 4 8 8 C 1.47521 * 125.77290 * 179.97438 * 7 6 5 9 9 O 1.21602 * 119.99846 * 353.27680 * 8 7 6 10 10 N 1.34777 * 120.00537 * 173.27598 * 8 7 6 11 11 C 1.46930 * 120.62768 * 354.28525 * 10 8 7 12 12 C 1.53189 * 108.77891 * 126.40891 * 11 10 8 13 13 C 1.53039 * 109.31040 * 54.63220 * 12 11 10 14 14 H 1.08999 * 109.46484 * 58.65850 * 13 12 11 15 15 C 1.53001 * 109.44797 * 178.62097 * 13 12 11 16 16 C 1.53046 * 109.53988 * 298.63346 * 13 12 11 17 17 H 1.09002 * 109.49760 * 301.41552 * 16 13 12 18 18 C 1.53001 * 109.52334 * 181.33432 * 16 13 12 19 19 N 1.46496 * 109.46758 * 175.14571 * 18 16 13 20 20 C 1.36945 * 119.99849 * 180.02562 * 19 18 16 21 21 H 1.07993 * 119.99984 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00044 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99917 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99805 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47149 * 90.00159 * 24 22 20 26 26 H 1.48503 * 109.46959 * 209.99873 * 24 22 20 27 27 H 1.48494 * 109.47157 * 330.00127 * 24 22 20 28 28 C 1.46923 * 120.63222 * 174.29861 * 10 8 7 29 29 N 1.34403 * 108.45863 * 0.24345 * 7 6 5 30 30 N 1.28763 * 109.52218 * 359.58832 * 29 7 6 31 31 H 1.07999 * 119.99725 * 0.02562 * 1 2 3 32 32 H 1.07997 * 119.99959 * 180.02562 * 1 2 3 33 33 H 1.07999 * 119.99725 * 179.97438 * 2 1 3 34 34 H 1.08996 * 109.47334 * 4.99808 * 3 2 1 35 35 H 1.09007 * 109.47023 * 244.99902 * 3 2 1 36 36 H 1.08996 * 109.47156 * 59.99546 * 4 3 2 37 37 H 1.08998 * 109.47108 * 299.99896 * 4 3 2 38 38 H 1.08000 * 126.57825 * 0.02562 * 6 5 4 39 39 H 1.08999 * 109.58433 * 6.61792 * 11 10 8 40 40 H 1.09002 * 109.69819 * 246.26473 * 11 10 8 41 41 H 1.08999 * 109.49680 * 294.68009 * 12 11 10 42 42 H 1.08996 * 109.52437 * 174.59897 * 12 11 10 43 43 H 1.09001 * 109.47214 * 180.02562 * 15 13 12 44 44 H 1.09001 * 109.47342 * 300.06448 * 15 13 12 45 45 H 1.09000 * 109.47035 * 60.06064 * 15 13 12 46 46 H 1.08997 * 109.47245 * 295.14401 * 18 16 13 47 47 H 1.09002 * 109.47146 * 55.15110 * 18 16 13 48 48 H 0.96998 * 120.00693 * 0.02562 * 19 18 16 49 49 H 0.97003 * 119.99847 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.58728 * 113.80528 * 28 10 8 51 51 H 1.09001 * 109.58860 * 353.37361 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3331 1.1816 5 7 3.7680 2.6015 1.1812 6 6 3.8496 3.4829 2.1980 7 6 4.6290 4.5172 1.7636 8 6 4.9895 5.7137 2.5476 9 8 4.4864 5.8998 3.6389 10 7 5.8766 6.6005 2.0545 11 6 6.5863 6.3289 0.7969 12 6 6.3811 7.5146 -0.1511 13 6 6.8150 8.8040 0.5498 14 1 7.8616 8.7233 0.8434 15 6 6.6437 9.9860 -0.4064 16 6 5.9520 9.0256 1.7942 17 1 4.9029 9.0817 1.5040 18 6 6.3639 10.3318 2.4761 19 7 5.4626 10.6017 3.5989 20 6 5.6375 11.7248 4.3627 21 1 6.4403 12.4113 4.1376 22 6 4.7838 11.9803 5.4270 23 7 4.9523 13.0595 6.1614 24 14 3.3957 10.7925 5.8169 25 1 3.8781 9.7643 6.7735 26 1 2.2618 11.5374 6.4209 27 1 2.9438 10.1317 4.5662 28 6 6.1524 7.8570 2.7643 29 7 5.0070 4.2632 0.4991 30 7 4.5191 3.1326 0.1230 31 1 -0.5399 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3587 2.1316 0.0895 35 1 2.6214 1.4025 -0.9314 36 1 3.7400 0.5065 1.0920 37 1 2.4774 1.2356 2.1130 38 1 3.3873 3.3893 3.1696 39 1 6.1875 5.4229 0.3407 40 1 7.6502 6.2001 0.9959 41 1 5.3279 7.5850 -0.4229 42 1 6.9800 7.3700 -1.0502 43 1 6.9531 10.9046 0.0923 44 1 7.2582 9.8285 -1.2928 45 1 5.5970 10.0673 -0.6997 46 1 7.3861 10.2430 2.8440 47 1 6.3057 11.1503 1.7586 48 1 4.7418 9.9850 3.8015 49 1 4.3559 13.2379 6.9053 50 1 7.1808 7.8543 3.1256 51 1 5.4674 7.9593 3.6059 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133158995.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:30:45 Heat of formation + Delta-G solvation = 102.396751 kcal Electronic energy + Delta-G solvation = -30680.946698 eV Core-core repulsion = 26618.832926 eV Total energy + Delta-G solvation = -4062.113773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.58731 -39.99050 -37.92115 -36.94531 -35.12275 -34.25752 -33.62226 -31.89856 -31.33629 -30.31240 -29.71616 -28.15703 -26.02473 -25.08869 -24.16487 -22.89360 -22.49734 -22.11732 -21.02011 -20.52453 -20.23270 -19.32034 -17.82160 -17.34577 -16.68304 -16.45780 -16.20604 -15.80220 -15.29895 -15.00546 -14.76894 -14.54684 -14.31334 -14.12746 -13.99282 -13.66212 -13.49856 -13.33518 -13.20668 -13.04852 -12.71702 -12.50802 -12.40686 -12.20408 -11.94420 -11.78483 -11.72125 -11.62569 -11.26265 -11.10326 -10.80143 -10.76885 -10.71612 -10.49829 -10.23151 -10.08979 -10.03866 -10.00984 -9.63341 -9.55783 -9.47089 -8.80334 -8.48102 -7.12972 -5.68576 -3.03372 0.80856 1.45568 1.48468 1.74461 2.98597 3.21155 3.48692 3.53678 3.56349 3.81202 3.89379 4.07295 4.27963 4.40351 4.54030 4.59746 4.64828 4.69160 4.81335 4.85187 4.96915 4.99308 5.06707 5.17807 5.22413 5.30790 5.31590 5.42640 5.61613 5.62485 5.67202 5.76643 5.82677 5.88018 5.93348 5.96275 5.98074 6.07157 6.08584 6.12712 6.19854 6.25467 6.35861 6.43328 6.50662 6.68233 6.81029 6.87433 7.41496 7.65853 8.07829 8.16565 8.50561 9.30153 10.03137 10.22842 11.49755 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.002538 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.446856 B =11031.563917 C =12654.212608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C -0.107 4.107 4 C 0.126 3.874 5 N -0.360 5.360 6 C 0.094 3.906 7 C -0.090 4.090 8 C 0.598 3.402 9 O -0.536 6.536 10 N -0.593 5.593 11 C 0.070 3.930 12 C -0.122 4.122 13 C -0.085 4.085 14 H 0.072 0.928 15 C -0.148 4.148 16 C -0.105 4.105 17 H 0.073 0.927 18 C 0.163 3.837 19 N -0.757 5.757 20 C -0.241 4.241 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.935 5.935 24 Si 0.882 3.118 25 H -0.282 1.282 26 H -0.292 1.292 27 H -0.277 1.277 28 C 0.119 3.881 29 N -0.204 5.204 30 N -0.066 5.066 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.206 0.794 39 H 0.138 0.862 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.028 0.972 47 H 0.036 0.964 48 H 0.361 0.639 49 H 0.258 0.742 50 H 0.072 0.928 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.940 -29.146 -16.128 33.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.179 4.179 3 C -0.145 4.145 4 C 0.005 3.995 5 N -0.145 5.145 6 C -0.063 4.063 7 C -0.229 4.229 8 C 0.383 3.617 9 O -0.412 6.412 10 N -0.324 5.324 11 C -0.054 4.054 12 C -0.160 4.160 13 C -0.104 4.104 14 H 0.090 0.910 15 C -0.205 4.205 16 C -0.125 4.125 17 H 0.091 0.909 18 C 0.035 3.965 19 N -0.403 5.403 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.584 5.584 24 Si 0.712 3.288 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.003 4.003 29 N -0.076 5.076 30 N -0.045 5.045 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.222 0.778 39 H 0.154 0.846 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.046 0.954 47 H 0.054 0.946 48 H 0.194 0.806 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.662 -29.094 -16.885 33.744 hybrid contribution -1.436 -0.694 1.357 2.094 sum -4.098 -29.788 -15.528 33.841 Atomic orbital electron populations 1.23989 0.95905 1.02401 0.99202 1.22722 0.96016 0.97578 1.01608 1.21029 0.98025 0.96888 0.98526 1.22059 0.94480 0.81268 1.01694 1.50500 1.35735 1.17447 1.10831 1.23407 0.98174 0.89229 0.95463 1.21533 1.08024 1.00221 0.93163 1.16846 0.79260 0.81038 0.84566 1.90848 1.54487 1.75722 1.20169 1.47938 1.40621 1.19290 1.24528 1.22765 0.96935 1.01806 0.83892 1.21901 1.02030 0.94185 0.97928 1.21114 0.99693 0.94719 0.94920 0.90968 1.21887 1.01581 0.98463 0.98600 1.21772 1.00500 0.95366 0.94872 0.90866 1.20716 0.93673 0.92637 0.89457 1.42782 1.35345 1.27474 1.34665 1.19044 1.12503 0.98699 1.06856 0.89237 1.24655 0.99081 0.97399 0.98023 1.69708 1.40437 1.26922 1.21297 0.86584 0.82956 0.80982 0.78292 1.20873 1.21839 1.20280 1.21785 1.02288 0.80822 0.95387 1.74148 1.15672 1.07371 1.10440 1.81972 1.08862 1.05140 1.08565 0.88326 0.87950 0.86686 0.90484 0.89010 0.88066 0.87441 0.77773 0.84574 0.92006 0.91728 0.90914 0.91611 0.93125 0.92868 0.95422 0.94642 0.80580 0.93167 0.90994 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.65 14.32 29.01 0.42 -0.24 16 2 C -0.16 -0.55 9.52 -36.03 -0.34 -0.89 16 3 C -0.11 -0.46 5.86 -27.89 -0.16 -0.62 16 4 C 0.13 0.49 6.52 -4.04 -0.03 0.46 16 5 N -0.36 -2.84 3.69 -61.07 -0.23 -3.07 16 6 C 0.09 0.87 11.28 -16.84 -0.19 0.68 16 7 C -0.09 -1.14 6.74 -83.55 -0.56 -1.70 16 8 C 0.60 9.36 7.68 -12.48 -0.10 9.26 16 9 O -0.54 -10.07 16.31 5.28 0.09 -9.98 16 10 N -0.59 -8.83 2.97 -174.00 -0.52 -9.34 16 11 C 0.07 0.84 6.32 -3.71 -0.02 0.82 16 12 C -0.12 -1.40 5.36 -26.61 -0.14 -1.55 16 13 C -0.09 -1.10 2.23 -90.58 -0.20 -1.30 16 14 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 15 C -0.15 -1.81 8.82 37.16 0.33 -1.48 16 16 C -0.11 -1.71 1.92 -90.50 -0.17 -1.89 16 17 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 18 C 0.16 3.21 5.41 -4.04 -0.02 3.18 16 19 N -0.76 -18.71 5.18 -59.91 -0.31 -19.02 16 20 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 21 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 22 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 23 N -0.94 -30.20 13.97 55.49 0.78 -29.43 16 24 Si 0.88 23.44 27.74 -169.99 -4.71 18.73 16 25 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 27 H -0.28 -7.09 6.52 56.52 0.37 -6.72 16 28 C 0.12 1.99 5.50 -3.71 -0.02 1.97 16 29 N -0.20 -2.47 8.70 32.85 0.29 -2.18 16 30 N -0.07 -0.71 13.65 60.35 0.82 0.12 16 31 H 0.10 0.37 7.84 -52.49 -0.41 -0.04 16 32 H 0.10 0.28 8.06 -52.49 -0.42 -0.14 16 33 H 0.12 0.26 8.06 -52.49 -0.42 -0.17 16 34 H 0.08 0.40 7.79 -51.93 -0.40 -0.01 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.11 0.19 8.08 -51.93 -0.42 -0.23 16 38 H 0.21 1.35 8.06 -52.49 -0.42 0.92 16 39 H 0.14 1.64 3.65 -122.06 -0.45 1.19 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.04 0.70 6.15 -51.93 -0.32 0.38 16 48 H 0.36 8.98 4.75 -40.82 -0.19 8.78 16 49 H 0.26 7.95 8.31 -40.82 -0.34 7.62 16 50 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.10 1.90 6.24 -51.93 -0.32 1.58 16 LS Contribution 407.31 15.07 6.14 6.14 Total: -1.00 -36.09 407.31 -7.49 -43.58 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -8.36 Total: 4.94 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.48 Total: -0.47 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.83 Total: -62.93 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.71 Total: 18.73 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.09 -7.49 -43.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133158995.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.975 kcal (2) G-P(sol) polarization free energy of solvation -36.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds