Wall clock time and date at job start Wed Apr 1 2020 06:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50692 * 120.00034 * 2 1 4 4 C 1.52998 * 109.47406 * 125.00153 * 3 2 1 5 5 N 1.46496 * 109.47333 * 179.97438 * 4 3 2 6 6 C 1.34813 * 126.59697 * 124.99579 * 5 4 3 7 7 C 1.36593 * 106.84116 * 180.02562 * 6 5 4 8 8 C 1.47521 * 125.77290 * 179.97438 * 7 6 5 9 9 O 1.21602 * 119.99846 * 353.27680 * 8 7 6 10 10 N 1.34777 * 120.00537 * 173.27598 * 8 7 6 11 11 C 1.46930 * 120.62768 * 354.28525 * 10 8 7 12 12 C 1.53189 * 108.77891 * 126.40891 * 11 10 8 13 13 C 1.53039 * 109.31040 * 54.63220 * 12 11 10 14 14 H 1.08999 * 109.46484 * 58.65850 * 13 12 11 15 15 C 1.53001 * 109.44797 * 178.62097 * 13 12 11 16 16 C 1.53046 * 109.53988 * 298.63346 * 13 12 11 17 17 H 1.09002 * 109.49760 * 301.41552 * 16 13 12 18 18 C 1.53001 * 109.52334 * 181.33432 * 16 13 12 19 19 N 1.46496 * 109.46758 * 175.14571 * 18 16 13 20 20 C 1.36945 * 119.99849 * 180.02562 * 19 18 16 21 21 H 1.07993 * 119.99984 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00044 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99917 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99805 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47149 * 90.00159 * 24 22 20 26 26 H 1.48503 * 109.46959 * 209.99873 * 24 22 20 27 27 H 1.48494 * 109.47157 * 330.00127 * 24 22 20 28 28 C 1.46923 * 120.63222 * 174.29861 * 10 8 7 29 29 N 1.34403 * 108.45863 * 0.24345 * 7 6 5 30 30 N 1.28763 * 109.52218 * 359.58832 * 29 7 6 31 31 H 1.07999 * 119.99725 * 0.02562 * 1 2 3 32 32 H 1.07997 * 119.99959 * 180.02562 * 1 2 3 33 33 H 1.07999 * 119.99725 * 179.97438 * 2 1 3 34 34 H 1.08996 * 109.47334 * 4.99808 * 3 2 1 35 35 H 1.09007 * 109.47023 * 244.99902 * 3 2 1 36 36 H 1.08996 * 109.47156 * 59.99546 * 4 3 2 37 37 H 1.08998 * 109.47108 * 299.99896 * 4 3 2 38 38 H 1.08000 * 126.57825 * 0.02562 * 6 5 4 39 39 H 1.08999 * 109.58433 * 6.61792 * 11 10 8 40 40 H 1.09002 * 109.69819 * 246.26473 * 11 10 8 41 41 H 1.08999 * 109.49680 * 294.68009 * 12 11 10 42 42 H 1.08996 * 109.52437 * 174.59897 * 12 11 10 43 43 H 1.09001 * 109.47214 * 180.02562 * 15 13 12 44 44 H 1.09001 * 109.47342 * 300.06448 * 15 13 12 45 45 H 1.09000 * 109.47035 * 60.06064 * 15 13 12 46 46 H 1.08997 * 109.47245 * 295.14401 * 18 16 13 47 47 H 1.09002 * 109.47146 * 55.15110 * 18 16 13 48 48 H 0.96998 * 120.00693 * 0.02562 * 19 18 16 49 49 H 0.97003 * 119.99847 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.58728 * 113.80528 * 28 10 8 51 51 H 1.09001 * 109.58860 * 353.37361 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3331 1.1816 5 7 3.7680 2.6015 1.1812 6 6 3.8496 3.4829 2.1980 7 6 4.6290 4.5172 1.7636 8 6 4.9895 5.7137 2.5476 9 8 4.4864 5.8998 3.6389 10 7 5.8766 6.6005 2.0545 11 6 6.5863 6.3289 0.7969 12 6 6.3811 7.5146 -0.1511 13 6 6.8150 8.8040 0.5498 14 1 7.8616 8.7233 0.8434 15 6 6.6437 9.9860 -0.4064 16 6 5.9520 9.0256 1.7942 17 1 4.9029 9.0817 1.5040 18 6 6.3639 10.3318 2.4761 19 7 5.4626 10.6017 3.5989 20 6 5.6375 11.7248 4.3627 21 1 6.4403 12.4113 4.1376 22 6 4.7838 11.9803 5.4270 23 7 4.9523 13.0595 6.1614 24 14 3.3957 10.7925 5.8169 25 1 3.8781 9.7643 6.7735 26 1 2.2618 11.5374 6.4209 27 1 2.9438 10.1317 4.5662 28 6 6.1524 7.8570 2.7643 29 7 5.0070 4.2632 0.4991 30 7 4.5191 3.1326 0.1230 31 1 -0.5399 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3587 2.1316 0.0895 35 1 2.6214 1.4025 -0.9314 36 1 3.7400 0.5065 1.0920 37 1 2.4774 1.2356 2.1130 38 1 3.3873 3.3893 3.1696 39 1 6.1875 5.4229 0.3407 40 1 7.6502 6.2001 0.9959 41 1 5.3279 7.5850 -0.4229 42 1 6.9800 7.3700 -1.0502 43 1 6.9531 10.9046 0.0923 44 1 7.2582 9.8285 -1.2928 45 1 5.5970 10.0673 -0.6997 46 1 7.3861 10.2430 2.8440 47 1 6.3057 11.1503 1.7586 48 1 4.7418 9.9850 3.8015 49 1 4.3559 13.2379 6.9053 50 1 7.1808 7.8543 3.1256 51 1 5.4674 7.9593 3.6059 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133158995.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:30:44 Heat of formation + Delta-G solvation = 78.559477 kcal Electronic energy + Delta-G solvation = -30681.980360 eV Core-core repulsion = 26618.832926 eV Total energy + Delta-G solvation = -4063.147434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.37719 -41.15223 -39.16892 -37.38650 -36.74742 -35.23065 -34.62110 -33.69200 -32.32151 -31.71631 -30.38517 -29.24215 -27.56530 -25.67021 -25.27270 -24.55096 -23.47941 -22.81374 -22.52906 -21.42418 -20.77493 -20.39591 -19.63158 -18.52005 -17.54384 -17.20858 -17.17196 -16.71618 -16.27965 -16.26443 -15.95093 -15.82484 -15.47951 -15.20559 -15.11593 -14.88245 -14.61933 -14.41549 -14.25545 -14.08892 -13.93216 -13.70620 -13.46533 -13.34968 -13.01649 -12.88359 -12.68949 -12.62817 -12.56907 -12.27365 -12.19388 -12.04467 -11.89888 -11.86380 -11.66267 -11.39926 -11.36549 -11.24237 -11.00632 -10.67579 -10.44670 -10.28822 -9.65613 -9.28262 -8.04521 -5.36224 0.08390 0.51224 0.97756 1.34670 1.38047 1.39248 1.43219 1.89130 2.13260 2.45066 3.03308 3.27257 3.28767 3.50701 3.67502 3.77157 3.81822 3.85107 3.89518 3.97885 4.02867 4.08732 4.19149 4.29028 4.31456 4.35150 4.38877 4.51521 4.59225 4.62766 4.76015 4.78009 4.80053 4.93304 4.94723 4.95727 5.05022 5.06141 5.12993 5.18584 5.23431 5.30001 5.39000 5.45943 5.57239 5.64653 5.71581 5.75329 5.81689 6.20244 6.30297 6.78813 7.04501 7.06064 7.83510 8.00764 9.16963 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.002538 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.446856 B =11031.563917 C =12654.212608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 C -0.103 4.103 4 C 0.118 3.882 5 N -0.345 5.345 6 C 0.110 3.890 7 C -0.118 4.118 8 C 0.593 3.407 9 O -0.578 6.578 10 N -0.593 5.593 11 C 0.067 3.933 12 C -0.114 4.114 13 C -0.079 4.079 14 H 0.083 0.917 15 C -0.145 4.145 16 C -0.092 4.092 17 H 0.058 0.942 18 C 0.160 3.840 19 N -0.761 5.761 20 C -0.228 4.228 21 H 0.063 0.937 22 C -0.059 4.059 23 N -0.980 5.980 24 Si 0.946 3.054 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.264 1.264 28 C 0.122 3.878 29 N -0.214 5.214 30 N -0.077 5.077 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.136 0.864 38 H 0.232 0.768 39 H 0.144 0.856 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.102 0.898 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.047 0.953 46 H 0.031 0.969 47 H 0.039 0.961 48 H 0.361 0.639 49 H 0.258 0.742 50 H 0.077 0.923 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 -32.374 -17.871 37.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.176 4.176 3 C -0.141 4.141 4 C -0.001 4.001 5 N -0.129 5.129 6 C -0.048 4.048 7 C -0.257 4.257 8 C 0.380 3.620 9 O -0.457 6.457 10 N -0.324 5.324 11 C -0.055 4.055 12 C -0.152 4.152 13 C -0.098 4.098 14 H 0.102 0.898 15 C -0.203 4.203 16 C -0.112 4.112 17 H 0.077 0.923 18 C 0.034 3.966 19 N -0.406 5.406 20 C -0.359 4.359 21 H 0.081 0.919 22 C -0.251 4.251 23 N -0.631 5.631 24 Si 0.774 3.226 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.190 1.190 28 C 0.000 4.000 29 N -0.087 5.087 30 N -0.057 5.057 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.248 0.752 39 H 0.160 0.840 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.194 0.806 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.856 -32.374 -18.712 37.501 hybrid contribution -1.329 0.243 1.818 2.265 sum -4.185 -32.131 -16.894 36.542 Atomic orbital electron populations 1.24104 0.96225 1.02645 0.99458 1.22771 0.95880 0.97619 1.01292 1.20959 0.97779 0.97108 0.98227 1.22514 0.94822 0.79897 1.02862 1.50752 1.34602 1.17978 1.09606 1.23767 0.96541 0.88128 0.96325 1.21243 1.10416 1.00343 0.93692 1.17263 0.78668 0.81752 0.84321 1.90810 1.55990 1.76907 1.22031 1.48015 1.40728 1.18410 1.25205 1.22972 0.97417 1.02382 0.82717 1.21863 1.01962 0.92801 0.98591 1.21102 0.99429 0.95926 0.93377 0.89827 1.21860 1.01771 0.97380 0.99253 1.21625 1.00337 0.93221 0.96028 0.92349 1.20905 0.92818 0.94744 0.88139 1.42850 1.36185 1.26100 1.35484 1.19062 1.10995 0.99090 1.06754 0.91867 1.25373 1.01990 0.99272 0.98452 1.69857 1.41909 1.29037 1.22264 0.85542 0.79911 0.78740 0.78365 1.20821 1.21637 1.18964 1.21564 1.01571 0.82179 0.94731 1.74062 1.16305 1.08061 1.10280 1.81894 1.09397 1.04826 1.09544 0.88913 0.87057 0.85130 0.91620 0.90117 0.85980 0.84651 0.75219 0.84005 0.90611 0.92723 0.87929 0.92989 0.90515 0.93406 0.95103 0.94276 0.80590 0.93320 0.90459 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.05 14.32 67.77 0.97 -0.08 16 2 C -0.16 -0.70 9.52 25.64 0.24 -0.46 16 3 C -0.10 -0.66 5.86 29.84 0.17 -0.49 16 4 C 0.12 0.54 6.52 86.38 0.56 1.10 16 5 N -0.34 -4.59 3.69 -347.12 -1.28 -5.88 16 6 C 0.11 1.81 11.28 83.85 0.95 2.76 16 7 C -0.12 -2.83 6.74 40.81 0.28 -2.55 16 8 C 0.59 18.46 7.68 86.69 0.67 19.13 16 9 O -0.58 -22.00 16.31 -4.04 -0.07 -22.06 16 10 N -0.59 -17.34 2.97 -822.66 -2.45 -19.79 16 11 C 0.07 1.50 6.32 86.36 0.55 2.05 16 12 C -0.11 -2.33 5.36 30.67 0.16 -2.17 16 13 C -0.08 -1.88 2.23 -10.76 -0.02 -1.90 16 14 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 15 C -0.15 -3.25 8.82 71.98 0.63 -2.62 16 16 C -0.09 -2.96 1.92 -10.71 -0.02 -2.98 16 17 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 18 C 0.16 6.30 5.41 86.38 0.47 6.77 16 19 N -0.76 -37.99 5.18 -343.46 -1.78 -39.77 16 20 C -0.23 -13.59 10.47 84.03 0.88 -12.71 16 21 H 0.06 4.04 8.06 -2.91 -0.02 4.02 16 22 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 23 N -0.98 -64.79 13.97 21.65 0.30 -64.48 16 24 Si 0.95 49.38 27.74 68.60 1.90 51.29 16 25 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 26 H -0.29 -14.95 7.11 99.48 0.71 -14.25 16 27 H -0.26 -13.09 6.52 99.48 0.65 -12.44 16 28 C 0.12 4.09 5.50 86.36 0.48 4.56 16 29 N -0.21 -4.89 8.70 -50.00 -0.44 -5.33 16 30 N -0.08 -1.50 13.65 37.02 0.51 -1.00 16 31 H 0.09 0.61 7.84 -2.91 -0.02 0.59 16 32 H 0.11 0.41 8.06 -2.91 -0.02 0.39 16 33 H 0.13 0.19 8.06 -2.91 -0.02 0.16 16 34 H 0.07 0.58 7.79 -2.39 -0.02 0.56 16 35 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.14 -0.05 8.08 -2.39 -0.02 -0.07 16 38 H 0.23 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.14 3.16 3.65 -93.13 -0.34 2.82 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.05 1.30 6.30 -2.39 -0.02 1.29 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.04 1.54 6.15 -2.39 -0.01 1.53 16 48 H 0.36 18.05 4.75 -92.71 -0.44 17.61 16 49 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 50 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 51 H 0.06 2.51 6.24 -2.39 -0.01 2.50 16 Total: -1.00 -80.38 407.31 4.23 -76.15 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.10 Total: 23.65 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 7.43 Total: 7.22 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -5.13 Total: -136.24 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.07 Total: -22.06 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.90 Total: 51.29 kcal Total: -80.38 4.23 -76.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133158995.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.708 kcal (2) G-P(sol) polarization free energy of solvation -80.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds