Wall clock time and date at job start Wed Apr 1 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46193 * 2 1 4 4 C 1.53037 * 109.44803 * 240.03538 * 2 1 3 5 5 C 1.53620 * 109.24431 * 178.49733 * 4 2 1 6 6 N 1.46930 * 108.54208 * 54.86071 * 5 4 2 7 7 C 1.34773 * 120.63214 * 126.37009 * 6 5 4 8 8 O 1.21595 * 120.00035 * 187.08173 * 7 6 5 9 9 C 1.47527 * 120.00124 * 7.07983 * 7 6 5 10 10 C 1.36591 * 125.77294 * 187.31061 * 9 7 6 11 11 N 1.34814 * 106.84135 * 180.28736 * 10 9 7 12 12 C 1.46499 * 126.59394 * 179.74569 * 11 10 9 13 13 C 1.52996 * 109.47368 * 124.99784 * 12 11 10 14 14 C 1.52995 * 117.50185 * 243.74627 * 13 12 11 15 15 C 1.52998 * 117.50240 * 175.08355 * 13 12 11 16 16 N 1.40215 * 106.80677 * 359.59629 * 11 10 9 17 17 N 1.28752 * 108.36815 * 0.41837 * 16 11 10 18 18 C 1.46927 * 118.73308 * 306.09196 * 6 5 4 19 19 C 1.53040 * 109.46085 * 119.97748 * 2 1 3 20 20 H 1.09004 * 109.50049 * 61.41728 * 19 2 1 21 21 C 1.53005 * 109.52344 * 301.33807 * 19 2 1 22 22 N 1.46496 * 109.47009 * 175.14458 * 21 19 2 23 23 C 1.36935 * 119.99966 * 179.97438 * 22 21 19 24 24 H 1.07998 * 120.00214 * 0.02562 * 23 22 21 25 25 C 1.38815 * 120.00391 * 180.02562 * 23 22 21 26 26 N 1.31611 * 120.00365 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 119.99655 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.47485 * 90.00131 * 27 25 23 29 29 H 1.48502 * 109.47420 * 210.00130 * 27 25 23 30 30 H 1.48506 * 109.47481 * 330.00153 * 27 25 23 31 31 H 1.09006 * 109.46995 * 300.02426 * 1 2 3 32 32 H 1.09002 * 109.47731 * 60.02177 * 1 2 3 33 33 H 1.09001 * 109.47570 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.50293 * 298.57994 * 4 2 1 35 35 H 1.09001 * 109.49948 * 58.63906 * 4 2 1 36 36 H 1.09001 * 109.74183 * 295.11816 * 5 4 2 37 37 H 1.09000 * 109.66545 * 174.55214 * 5 4 2 38 38 H 1.08007 * 126.57618 * 0.02705 * 10 9 7 39 39 H 1.09001 * 109.46859 * 245.00148 * 12 11 10 40 40 H 1.09004 * 109.47386 * 4.99447 * 12 11 10 41 41 H 1.09004 * 115.54761 * 29.41265 * 13 12 11 42 42 H 1.09005 * 117.49581 * 359.97438 * 14 13 12 43 43 H 1.08994 * 117.50042 * 145.01701 * 14 13 12 44 44 H 1.08993 * 117.50032 * 214.98510 * 15 13 12 45 45 H 1.08998 * 117.49386 * 359.97438 * 15 13 12 46 46 H 1.08998 * 109.58434 * 173.64963 * 18 6 5 47 47 H 1.08995 * 109.58709 * 294.07464 * 18 6 5 48 48 H 1.08998 * 109.46530 * 295.14567 * 21 19 2 49 49 H 1.09002 * 109.47026 * 55.14578 * 21 19 2 50 50 H 0.97003 * 120.00633 * 0.02562 * 22 21 19 51 51 H 0.96999 * 120.00169 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7208 -1.2502 5 6 3.5752 -0.6852 -1.2646 6 7 4.0676 -1.2495 -0.0004 7 6 4.9616 -2.2580 -0.0007 8 8 5.2642 -2.8025 1.0436 9 6 5.5730 -2.7015 -1.2679 10 6 6.3782 -3.7933 -1.4269 11 7 6.7247 -3.8368 -2.7290 12 6 7.5863 -4.8329 -3.3706 13 6 6.8442 -5.4655 -4.5495 14 6 6.5365 -6.9621 -4.4696 15 6 7.6192 -6.4529 -5.4244 16 7 6.0991 -2.7473 -3.3516 17 7 5.4325 -2.0991 -2.4611 18 6 3.5713 -0.6892 1.2639 19 6 2.0399 -0.7210 1.2499 20 1 1.6976 -1.7558 1.2382 21 6 1.5030 -0.0198 2.4994 22 7 1.8953 -0.7769 3.6907 23 6 1.5255 -0.3373 4.9338 24 1 0.9443 0.5672 5.0359 25 6 1.8976 -1.0543 6.0627 26 7 1.5417 -0.6321 7.2573 27 14 2.9021 -2.6193 5.8860 28 1 4.3487 -2.2861 5.9252 29 1 2.5770 -3.5448 7.0009 30 1 2.5794 -3.2713 4.5913 31 1 -0.3633 0.5142 0.8898 32 1 -0.3634 0.5135 -0.8902 33 1 -0.3634 -1.0276 0.0005 34 1 1.6972 -1.7556 -1.2386 35 1 1.6564 -0.2209 -2.1399 36 1 3.9187 0.3446 -1.3635 37 1 3.9481 -1.2786 -2.0994 38 1 6.6826 -4.4862 -0.6563 39 1 8.4948 -4.3497 -3.7302 40 1 7.8477 -5.6064 -2.6485 41 1 6.1105 -4.8264 -5.0407 42 1 6.8631 -7.4960 -3.5771 43 1 5.6005 -7.3076 -4.9084 44 1 7.3951 -6.4637 -6.4909 45 1 8.6578 -6.6515 -5.1602 46 1 3.9416 -1.2852 2.0980 47 1 3.9145 0.3402 1.3670 48 1 1.9161 0.9873 2.5565 49 1 0.4158 0.0359 2.4460 50 1 2.4176 -1.5891 3.5991 51 1 1.8020 -1.1330 8.0462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133199106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:30:31 Heat of formation + Delta-G solvation = 109.791502 kcal Electronic energy + Delta-G solvation = -30811.579518 eV Core-core repulsion = 26749.786406 eV Total energy + Delta-G solvation = -4061.793112 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.56005 -39.99778 -38.34625 -37.87325 -35.18059 -34.47319 -33.63806 -31.89425 -31.25647 -30.13043 -28.69999 -28.00184 -25.87511 -24.21350 -23.16058 -23.02193 -22.78436 -22.49823 -21.35405 -21.01469 -20.15447 -19.34915 -17.95813 -17.42073 -16.64710 -16.58915 -16.14107 -15.67563 -15.14617 -14.86449 -14.86137 -14.75448 -14.27823 -14.09719 -13.99899 -13.94659 -13.40922 -13.28764 -13.04840 -12.75563 -12.67894 -12.48648 -12.27037 -12.19538 -11.97866 -11.73534 -11.65205 -11.31093 -11.22529 -11.10266 -10.95816 -10.78431 -10.76234 -10.60993 -10.48693 -10.23673 -10.09473 -10.00615 -9.67918 -9.54170 -9.47427 -8.80122 -8.47979 -7.12753 -5.68308 -3.03103 0.83315 1.48937 1.61309 2.97044 3.05222 3.21909 3.49255 3.54549 3.57135 3.64655 3.92543 4.06557 4.22221 4.27427 4.41201 4.53665 4.67347 4.69612 4.69809 4.80972 4.95330 4.96942 4.98589 5.04368 5.17548 5.23035 5.26794 5.42106 5.43665 5.45735 5.61511 5.62123 5.66430 5.74086 5.81107 5.86832 5.95738 5.99138 6.04889 6.11361 6.14158 6.21771 6.34905 6.42820 6.49089 6.66244 6.80497 6.87177 7.41942 7.66403 8.08089 8.17053 8.50797 9.30525 10.03500 10.23269 11.50009 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.002563 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.358359 B =10920.548940 C =12409.770094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.127 4.127 5 C 0.085 3.915 6 N -0.594 5.594 7 C 0.598 3.402 8 O -0.536 6.536 9 C -0.092 4.092 10 C 0.094 3.906 11 N -0.357 5.357 12 C 0.154 3.846 13 C -0.177 4.177 14 C -0.176 4.176 15 C -0.165 4.165 16 N -0.066 5.066 17 N -0.204 5.204 18 C 0.118 3.882 19 C -0.105 4.105 20 H 0.073 0.927 21 C 0.163 3.837 22 N -0.757 5.757 23 C -0.241 4.241 24 H 0.090 0.910 25 C 0.004 3.996 26 N -0.936 5.936 27 Si 0.882 3.118 28 H -0.283 1.283 29 H -0.292 1.292 30 H -0.276 1.276 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.124 0.876 38 H 0.205 0.795 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.028 0.972 49 H 0.036 0.964 50 H 0.362 0.638 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.761 -9.390 -29.833 33.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.165 4.165 5 C -0.039 4.039 6 N -0.325 5.325 7 C 0.383 3.617 8 O -0.412 6.412 9 C -0.231 4.231 10 C -0.063 4.063 11 N -0.142 5.142 12 C 0.033 3.967 13 C -0.196 4.196 14 C -0.213 4.213 15 C -0.202 4.202 16 N -0.046 5.046 17 N -0.077 5.077 18 C -0.003 4.003 19 C -0.125 4.125 20 H 0.092 0.908 21 C 0.035 3.965 22 N -0.403 5.403 23 C -0.371 4.371 24 H 0.107 0.893 25 C -0.192 4.192 26 N -0.584 5.584 27 Si 0.712 3.288 28 H -0.209 1.209 29 H -0.219 1.219 30 H -0.202 1.202 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.141 0.859 38 H 0.222 0.778 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.139 0.861 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.090 0.910 48 H 0.046 0.954 49 H 0.053 0.947 50 H 0.195 0.805 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.654 -8.826 -30.425 33.755 hybrid contribution 0.898 -1.722 0.867 2.127 sum 12.553 -10.548 -29.558 33.801 Atomic orbital electron populations 1.21889 0.94954 1.01898 1.01809 1.21098 0.95952 0.99472 0.93846 0.90884 1.22057 0.95064 1.01196 0.98187 1.22592 0.94101 1.00342 0.86826 1.47941 1.41863 1.34269 1.08469 1.16842 0.79171 0.79806 0.85832 1.90848 1.62982 1.55599 1.31747 1.21515 1.08334 0.98954 0.94287 1.23394 0.96192 0.99313 0.87352 1.50408 1.35128 1.21772 1.06856 1.21619 0.91427 0.88774 0.94896 1.22537 1.04249 0.93290 0.99502 1.23167 1.00808 0.95082 1.02224 1.23006 0.97508 1.01923 0.97775 1.81964 1.09762 0.95445 1.17401 1.74419 1.13083 1.21229 0.98994 1.21789 0.93990 0.99227 0.85302 1.21764 0.94334 1.00850 0.95542 0.90814 1.20715 0.97390 0.94111 0.84280 1.42783 1.66154 1.28764 1.02569 1.19043 1.28374 1.07847 0.81854 0.89250 1.24653 1.00691 0.98688 0.95128 1.69703 1.50961 1.40737 0.96978 0.86585 0.80822 0.84473 0.76944 1.20920 1.21860 1.20172 0.91566 0.93136 0.92874 0.91848 0.90854 0.91490 0.85860 0.77848 0.87810 0.87522 0.86124 0.88242 0.88233 0.87996 0.88172 0.88485 0.90957 0.95437 0.94666 0.80526 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.81 37.16 0.33 -1.46 16 2 C -0.08 -1.08 2.23 -90.58 -0.20 -1.28 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.43 5.38 -26.39 -0.14 -1.57 16 5 C 0.08 1.02 6.11 -3.49 -0.02 1.00 16 6 N -0.59 -8.83 2.97 -173.74 -0.52 -9.34 16 7 C 0.60 9.39 7.67 -12.48 -0.10 9.30 16 8 O -0.54 -10.11 16.30 5.28 0.09 -10.03 16 9 C -0.09 -1.17 6.69 -83.55 -0.56 -1.73 16 10 C 0.09 0.89 11.28 -16.84 -0.19 0.70 16 11 N -0.36 -2.93 3.69 -61.06 -0.23 -3.16 16 12 C 0.15 0.66 6.82 -4.04 -0.03 0.63 16 13 C -0.18 -0.81 5.93 -90.63 -0.54 -1.35 16 14 C -0.18 -0.68 10.18 -26.70 -0.27 -0.95 16 15 C -0.16 -0.51 10.25 -26.70 -0.27 -0.78 16 16 N -0.07 -0.73 13.48 60.35 0.81 0.09 16 17 N -0.20 -2.51 8.79 32.85 0.29 -2.22 16 18 C 0.12 1.97 5.53 -3.71 -0.02 1.95 16 19 C -0.11 -1.70 1.92 -90.50 -0.17 -1.88 16 20 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 21 C 0.16 3.19 5.41 -4.04 -0.02 3.17 16 22 N -0.76 -18.69 5.18 -59.91 -0.31 -19.00 16 23 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 24 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 25 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 26 N -0.94 -30.20 13.97 55.49 0.78 -29.43 16 27 Si 0.88 23.44 27.73 -169.99 -4.71 18.72 16 28 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 29 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 30 H -0.28 -7.07 6.52 56.52 0.37 -6.70 16 31 H 0.07 0.87 6.30 -51.93 -0.33 0.54 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.12 1.49 4.12 -77.96 -0.32 1.16 16 38 H 0.20 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.11 0.21 7.82 -51.93 -0.41 -0.20 16 41 H 0.12 0.77 7.94 -51.93 -0.41 0.36 16 42 H 0.10 0.30 8.03 -51.93 -0.42 -0.11 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.10 1.92 6.20 -51.93 -0.32 1.59 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.04 0.70 6.15 -51.93 -0.32 0.38 16 50 H 0.36 8.99 4.75 -40.82 -0.19 8.79 16 51 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 404.61 15.07 6.10 6.10 Total: -1.00 -36.07 404.61 -8.40 -44.47 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.23 Total: 5.22 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -2.46 Total: -1.42 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: 0.83 Total: -63.06 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.71 Total: 18.72 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.07 -8.40 -44.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133199106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.260 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds