Wall clock time and date at job start Wed Apr 1 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46193 * 2 1 4 4 C 1.53037 * 109.44803 * 240.03538 * 2 1 3 5 5 C 1.53620 * 109.24431 * 178.49733 * 4 2 1 6 6 N 1.46930 * 108.54208 * 54.86071 * 5 4 2 7 7 C 1.34773 * 120.63214 * 126.37009 * 6 5 4 8 8 O 1.21595 * 120.00035 * 187.08173 * 7 6 5 9 9 C 1.47527 * 120.00124 * 7.07983 * 7 6 5 10 10 C 1.36591 * 125.77294 * 187.31061 * 9 7 6 11 11 N 1.34814 * 106.84135 * 180.28736 * 10 9 7 12 12 C 1.46499 * 126.59394 * 179.74569 * 11 10 9 13 13 C 1.52996 * 109.47368 * 124.99784 * 12 11 10 14 14 C 1.52995 * 117.50185 * 243.74627 * 13 12 11 15 15 C 1.52998 * 117.50240 * 175.08355 * 13 12 11 16 16 N 1.40215 * 106.80677 * 359.59629 * 11 10 9 17 17 N 1.28752 * 108.36815 * 0.41837 * 16 11 10 18 18 C 1.46927 * 118.73308 * 306.09196 * 6 5 4 19 19 C 1.53040 * 109.46085 * 119.97748 * 2 1 3 20 20 H 1.09004 * 109.50049 * 61.41728 * 19 2 1 21 21 C 1.53005 * 109.52344 * 301.33807 * 19 2 1 22 22 N 1.46496 * 109.47009 * 175.14458 * 21 19 2 23 23 C 1.36935 * 119.99966 * 179.97438 * 22 21 19 24 24 H 1.07998 * 120.00214 * 0.02562 * 23 22 21 25 25 C 1.38815 * 120.00391 * 180.02562 * 23 22 21 26 26 N 1.31611 * 120.00365 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 119.99655 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.47485 * 90.00131 * 27 25 23 29 29 H 1.48502 * 109.47420 * 210.00130 * 27 25 23 30 30 H 1.48506 * 109.47481 * 330.00153 * 27 25 23 31 31 H 1.09006 * 109.46995 * 300.02426 * 1 2 3 32 32 H 1.09002 * 109.47731 * 60.02177 * 1 2 3 33 33 H 1.09001 * 109.47570 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.50293 * 298.57994 * 4 2 1 35 35 H 1.09001 * 109.49948 * 58.63906 * 4 2 1 36 36 H 1.09001 * 109.74183 * 295.11816 * 5 4 2 37 37 H 1.09000 * 109.66545 * 174.55214 * 5 4 2 38 38 H 1.08007 * 126.57618 * 0.02705 * 10 9 7 39 39 H 1.09001 * 109.46859 * 245.00148 * 12 11 10 40 40 H 1.09004 * 109.47386 * 4.99447 * 12 11 10 41 41 H 1.09004 * 115.54761 * 29.41265 * 13 12 11 42 42 H 1.09005 * 117.49581 * 359.97438 * 14 13 12 43 43 H 1.08994 * 117.50042 * 145.01701 * 14 13 12 44 44 H 1.08993 * 117.50032 * 214.98510 * 15 13 12 45 45 H 1.08998 * 117.49386 * 359.97438 * 15 13 12 46 46 H 1.08998 * 109.58434 * 173.64963 * 18 6 5 47 47 H 1.08995 * 109.58709 * 294.07464 * 18 6 5 48 48 H 1.08998 * 109.46530 * 295.14567 * 21 19 2 49 49 H 1.09002 * 109.47026 * 55.14578 * 21 19 2 50 50 H 0.97003 * 120.00633 * 0.02562 * 22 21 19 51 51 H 0.96999 * 120.00169 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7208 -1.2502 5 6 3.5752 -0.6852 -1.2646 6 7 4.0676 -1.2495 -0.0004 7 6 4.9616 -2.2580 -0.0007 8 8 5.2642 -2.8025 1.0436 9 6 5.5730 -2.7015 -1.2679 10 6 6.3782 -3.7933 -1.4269 11 7 6.7247 -3.8368 -2.7290 12 6 7.5863 -4.8329 -3.3706 13 6 6.8442 -5.4655 -4.5495 14 6 6.5365 -6.9621 -4.4696 15 6 7.6192 -6.4529 -5.4244 16 7 6.0991 -2.7473 -3.3516 17 7 5.4325 -2.0991 -2.4611 18 6 3.5713 -0.6892 1.2639 19 6 2.0399 -0.7210 1.2499 20 1 1.6976 -1.7558 1.2382 21 6 1.5030 -0.0198 2.4994 22 7 1.8953 -0.7769 3.6907 23 6 1.5255 -0.3373 4.9338 24 1 0.9443 0.5672 5.0359 25 6 1.8976 -1.0543 6.0627 26 7 1.5417 -0.6321 7.2573 27 14 2.9021 -2.6193 5.8860 28 1 4.3487 -2.2861 5.9252 29 1 2.5770 -3.5448 7.0009 30 1 2.5794 -3.2713 4.5913 31 1 -0.3633 0.5142 0.8898 32 1 -0.3634 0.5135 -0.8902 33 1 -0.3634 -1.0276 0.0005 34 1 1.6972 -1.7556 -1.2386 35 1 1.6564 -0.2209 -2.1399 36 1 3.9187 0.3446 -1.3635 37 1 3.9481 -1.2786 -2.0994 38 1 6.6826 -4.4862 -0.6563 39 1 8.4948 -4.3497 -3.7302 40 1 7.8477 -5.6064 -2.6485 41 1 6.1105 -4.8264 -5.0407 42 1 6.8631 -7.4960 -3.5771 43 1 5.6005 -7.3076 -4.9084 44 1 7.3951 -6.4637 -6.4909 45 1 8.6578 -6.6515 -5.1602 46 1 3.9416 -1.2852 2.0980 47 1 3.9145 0.3402 1.3670 48 1 1.9161 0.9873 2.5565 49 1 0.4158 0.0359 2.4460 50 1 2.4176 -1.5891 3.5991 51 1 1.8020 -1.1330 8.0462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133199106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:30:30 Heat of formation + Delta-G solvation = 86.210865 kcal Electronic energy + Delta-G solvation = -30812.602051 eV Core-core repulsion = 26749.786406 eV Total energy + Delta-G solvation = -4062.815645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.36170 -41.15769 -39.17326 -38.63522 -36.77433 -35.42733 -34.81802 -33.68901 -32.30437 -31.64448 -29.47061 -28.92586 -27.42915 -25.27760 -24.63517 -23.69543 -23.47258 -23.27006 -22.54311 -21.94498 -21.25623 -20.34732 -19.62382 -18.66848 -17.55494 -17.36351 -17.17205 -16.71096 -16.41092 -16.11403 -15.86776 -15.61540 -15.50260 -15.19196 -15.03379 -14.94462 -14.65234 -14.48592 -14.31663 -14.22091 -14.04798 -13.47690 -13.35199 -13.20142 -12.90703 -12.75671 -12.68551 -12.62951 -12.40961 -12.30096 -12.18610 -11.93864 -11.85930 -11.70552 -11.64846 -11.43626 -11.28745 -11.24650 -11.02166 -10.99377 -10.74956 -10.40485 -9.65857 -9.27769 -8.04052 -5.35708 0.09026 0.52907 1.01132 1.35586 1.38635 1.44365 1.88268 2.13116 2.45709 2.76818 3.05263 3.19366 3.27748 3.50498 3.62139 3.79250 3.82241 3.84374 3.88761 3.93382 3.98900 4.02748 4.05607 4.12289 4.30273 4.31454 4.43126 4.50097 4.56686 4.59040 4.69266 4.76738 4.77727 4.79979 4.92693 4.93683 4.98616 5.05157 5.10481 5.11930 5.16059 5.21614 5.22547 5.27465 5.41252 5.45119 5.56334 5.59494 5.75750 6.20697 6.29872 6.78735 7.04320 7.06652 7.84195 8.01457 9.17434 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.002563 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.358359 B =10920.548940 C =12409.770094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.084 0.916 4 C -0.119 4.119 5 C 0.084 3.916 6 N -0.594 5.594 7 C 0.593 3.407 8 O -0.578 6.578 9 C -0.119 4.119 10 C 0.110 3.890 11 N -0.342 5.342 12 C 0.146 3.854 13 C -0.188 4.188 14 C -0.180 4.180 15 C -0.152 4.152 16 N -0.079 5.079 17 N -0.215 5.215 18 C 0.122 3.878 19 C -0.092 4.092 20 H 0.059 0.941 21 C 0.160 3.840 22 N -0.761 5.761 23 C -0.228 4.228 24 H 0.063 0.937 25 C -0.059 4.059 26 N -0.980 5.980 27 Si 0.946 3.054 28 H -0.282 1.282 29 H -0.290 1.290 30 H -0.264 1.264 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.231 0.769 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.118 0.882 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.031 0.969 49 H 0.039 0.961 50 H 0.362 0.638 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.122 -10.668 -32.881 36.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.102 0.898 4 C -0.157 4.157 5 C -0.038 4.038 6 N -0.325 5.325 7 C 0.381 3.619 8 O -0.457 6.457 9 C -0.258 4.258 10 C -0.048 4.048 11 N -0.126 5.126 12 C 0.027 3.973 13 C -0.207 4.207 14 C -0.217 4.217 15 C -0.190 4.190 16 N -0.059 5.059 17 N -0.088 5.088 18 C -0.001 4.001 19 C -0.112 4.112 20 H 0.077 0.923 21 C 0.034 3.966 22 N -0.406 5.406 23 C -0.359 4.359 24 H 0.081 0.919 25 C -0.251 4.251 26 N -0.631 5.631 27 Si 0.775 3.225 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.189 1.189 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.146 0.854 38 H 0.247 0.753 39 H 0.139 0.861 40 H 0.155 0.845 41 H 0.116 0.884 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.136 0.864 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.049 0.951 49 H 0.057 0.943 50 H 0.195 0.805 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.010 -10.092 -33.576 37.396 hybrid contribution 0.482 -1.293 1.693 2.184 sum 13.492 -11.385 -31.883 36.444 Atomic orbital electron populations 1.21861 0.94219 1.01792 1.02407 1.21085 0.96469 0.99669 0.92543 0.89795 1.22023 0.94286 1.00914 0.98435 1.22780 0.94651 1.00874 0.85531 1.48017 1.41669 1.34147 1.08650 1.17246 0.78848 0.79385 0.86438 1.90809 1.64411 1.57053 1.33433 1.21241 1.10332 1.00793 0.93418 1.23761 0.94492 0.98375 0.88177 1.50662 1.34270 1.21280 1.06402 1.22087 0.91025 0.88749 0.95465 1.22431 1.04684 0.93381 1.00170 1.23246 1.00981 0.94501 1.03010 1.23097 0.98181 1.00084 0.97594 1.81891 1.10155 0.96395 1.17463 1.74353 1.13740 1.21819 0.98872 1.21575 0.94175 0.98889 0.85434 1.21619 0.93979 1.00013 0.95577 0.92264 1.20906 0.97681 0.94027 0.84013 1.42850 1.66017 1.29158 1.02595 1.19061 1.26627 1.06491 0.83714 0.91880 1.25371 1.02651 1.02177 0.94893 1.69852 1.53011 1.42452 0.97781 0.85540 0.79002 0.80721 0.77282 1.20876 1.21670 1.18877 0.92972 0.90529 0.93344 0.92591 0.87834 0.90329 0.85404 0.75261 0.86140 0.84455 0.88357 0.87061 0.89022 0.88014 0.86399 0.91902 0.90384 0.95131 0.94279 0.80545 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.81 71.98 0.63 -2.57 16 2 C -0.08 -1.84 2.23 -10.77 -0.02 -1.87 16 3 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 4 C -0.12 -2.37 5.38 30.82 0.17 -2.21 16 5 C 0.08 1.87 6.11 86.51 0.53 2.40 16 6 N -0.59 -17.37 2.97 -821.84 -2.44 -19.81 16 7 C 0.59 18.57 7.67 86.69 0.67 19.23 16 8 O -0.58 -22.09 16.30 -4.01 -0.07 -22.16 16 9 C -0.12 -2.90 6.69 40.82 0.27 -2.62 16 10 C 0.11 1.86 11.28 83.85 0.95 2.81 16 11 N -0.34 -4.84 3.69 -347.10 -1.28 -6.12 16 12 C 0.15 0.80 6.82 86.38 0.59 1.39 16 13 C -0.19 -1.34 5.93 -10.80 -0.06 -1.40 16 14 C -0.18 -1.01 10.18 30.62 0.31 -0.70 16 15 C -0.15 -0.56 10.25 30.62 0.31 -0.24 16 16 N -0.08 -1.62 13.48 37.02 0.50 -1.12 16 17 N -0.21 -5.02 8.79 -49.99 -0.44 -5.46 16 18 C 0.12 4.06 5.53 86.36 0.48 4.53 16 19 C -0.09 -2.93 1.92 -10.72 -0.02 -2.95 16 20 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 21 C 0.16 6.27 5.41 86.38 0.47 6.74 16 22 N -0.76 -37.91 5.18 -343.45 -1.78 -39.69 16 23 C -0.23 -13.57 10.47 84.03 0.88 -12.69 16 24 H 0.06 4.03 8.06 -2.91 -0.02 4.01 16 25 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 26 N -0.98 -64.78 13.97 21.65 0.30 -64.47 16 27 Si 0.95 49.36 27.73 68.60 1.90 51.26 16 28 H -0.28 -14.62 7.11 99.48 0.71 -13.91 16 29 H -0.29 -14.96 7.11 99.48 0.71 -14.26 16 30 H -0.26 -13.05 6.52 99.48 0.65 -12.40 16 31 H 0.05 1.29 6.30 -2.38 -0.02 1.28 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.13 2.87 4.12 -36.07 -0.15 2.73 16 38 H 0.23 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.14 -0.04 7.82 -2.39 -0.02 -0.06 16 41 H 0.10 1.18 7.94 -2.38 -0.02 1.16 16 42 H 0.11 0.36 8.03 -2.38 -0.02 0.34 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.06 2.54 6.20 -2.39 -0.01 2.53 16 47 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.04 1.53 6.15 -2.39 -0.01 1.52 16 50 H 0.36 18.05 4.75 -92.71 -0.44 17.61 16 51 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -80.56 404.61 3.61 -76.95 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.30 Total: 23.97 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 6.61 Total: 6.65 kcal Atomic # 7 Polarization: -131.54 SS G_CDS: -5.14 Total: -136.68 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.07 Total: -22.16 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 1.90 Total: 51.26 kcal Total: -80.56 3.61 -76.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133199106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.161 kcal (2) G-P(sol) polarization free energy of solvation -80.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds